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Courses & Graduate Certificate

Courses & Graduate Certificate

Formal training through SRNML-hosted courses

Three formal courses are available for hands-on and theoretical training.

  • Advanced Light Microscopy.  BIOL/ MBIO/ PBIO 5394. Prerequisite: permission of instructor and graduate standing. Corequisite: Lab section. Focuses on theory and techniques in light microscopy covering principles including confocal laser scanning microscopy, multiple photon imaging, FLIM/FCS, FRET, fluorescence microscopy, phase contrast, DIC, 3D rendering, and other advanced optical technologies. Also includes a lab section where students will learn to use advanced epifluorescence and confocal microscopes. Instructor: Dr. Gu.
  • Principles and techniques of transmission electron microscopy. BIOL/MBIO/PBIO 5364 (Fall)  An in-depth, laboratory-oriented course in the operation of the TEM. 3 hr lect, 10 hr lab/week. Instructors:  Dr. Sabisch, Dr. Larson.  Note that the lab time shown is a placeholder - labs will be scheduled with small groups during the first course meeting.
  • Scanning electron microscopy. BIOL/MBIO/PBIO 5374 (Spring) An in-depth, laboratory-oriented course in specimen preparation and operation of the SEM. 2 hr lect, 8 hr lab/week. Instructor: Dr. Larson.

Each course is available to both undergraduate and graduate students. Prerequisite: Consent of instructor. Students in the in-depth training courses need to obtain a research sponsor. Contact instructor for additional information.

NEW course policy changes 2024

These courses work best as project-based authentic learning experiences in the laboratory, and as such, students should enroll in them when they have a designated research project that would specifically benefit from the methods included in the course. A major change being implemented this year is that the student's advisor will be expected to pay for the instrument time needed to work on the student’s research project, as would be expected for any other student use of the equipment for research. 

  • Time during course lab periods will be used solely for training on SRNML samples. The student will be required to sign up for instrument time to collect data on their project samples, charged to their PI/advisor’s account.
  • Courses will be capped at 12 students maximum.
  • As per University policy, enrollment is first-come-first served.
  • Each course lists ‘graduate standing only’ as a requirement. We intend to enforce that policy more uniformly to give the most opportunities for graduate students.
  • We encourage PI/advisors not to recommend the course if no funds are available to support their project.
  • In the event students do not have funding for their project, they can complete a literature-based summary of the application of course materials to their area of research and present their findings.

The funding required will vary depending on which instruments are needed and what the goals of the research are. See here for the hourly rates for using the equipment. You want to look at the 'internal unassisted' rates to get an idea of the costs, which run from $25 to $45/hr depending on the SEM, for example. Use the table below to estimate how much recharge fees the student's PI would likely need to provide for the student to use the equipment to collect data, which should be both towards the PI's research project and the student's course project at the same time.

 courselow estimatemedium estimatehigh estimateestimated SRNML-covered training fees (not charged to PI)
ALM $     70.00 $      105.00 $      280.00 $             325.50
SEM $     64.00 $      206.00 $      404.00 $             700.00
TEM $     83.00 $      273.00 $      480.00 $          1,232.00

SRNML participation in your courses

SRNML frequently hosts tours and demos for other courses, and SRNML personnel frequently give guest lectures and seminars. Just ask!


Graduate Certificate in Microscopic Imaging & Technology

The Certificate Program in Microscopic Imaging and Technology is designed for graduate students with a strong interest in the investigation of using advanced imaging technology to characterize biological, materials and physical science specimens at a range of resolutions that can reach to a near atomic level. Students who may be interested with this certificate come from a wide range of interests (e.g., Biology, Microbiology, Plant Biology, Biomedical Engineering, Biotechnology, Chemistry, Biochemistry, Materials Sciences, Nanotechnology, Physics).

Requirements
Complete twelve hours of core microscopy courses:

BIOL/MBIO/PBIO 5364 Transmission Electron Microscopy (4 credits)
BIOL/MBIO/PBIO 5374 Scanning Electron Microscopy (4 credits)
BIOL/MBIO/PBIO 5394 Advanced Light Microscopy (4 credits)

Complete three hours of independent research in which student demonstrates research skills in microscopy as part of their graduate research:  To fulfill this requirement, students will enroll in three hours of graduate research courses that utilize microscopy imaging and technology, M/PBIOL 5990 Special Studies. Students applying to work with SRNML Personnel for Special Studies should write a short description of their Special Studies plan that includes:

  • Descriptive project title
  • Which SRNML Scientist will oversee and work with them on the project
  • A 1-2-paragraph Special Studies plan description that includes a very brief summary of the following:
    • Description of the problem to be investigated
    • Key knowledge / research gap(s) to be addressed
    • Related work already completed
    • Proposed plan of work for the semester and benchmarks for success, including both microscopy and literature reviews

View the Graduate Certificate Program Report (PDF) for program requirements. We are happy to answer questions.  For questions on Microscopy coursework contact srnml@ou.edu or amadden@ou.edu.  

Steps for enrolling in graduate certificate program

Students must submit a separate application to the certificate program on the Graduate College Website. Once admitted students will submit the Graduate Program Certificate Report with the signature of the signature of the Department of Microbiology and Plant Biology Graduate Liaison regardless of their home degree program.

  1. Go to the OU Graduate Application website.
  2. Scroll to the bottom and, if you do not have an account, create an account (If you already have an account, skip to step 8)
  3. Enter an email address, your first name, your last name, and your birthdate
  4. Click Continue
  5. In a new tab, go to your entered email and find your temporary pin
  6. Enter your pin and your birthday on the gograd site and click login
  7. Create a new password
  8. Scroll to the bottom and select start new application
  9. Select Add or Change Program and click Create Application
  10. Click Open Application
  11. Click Continue
  12. Fill out all of the information in each tab (On the Add or Change Program tab, select 3. I intend to pursue an additional graduate degree or certificate. If approved, you will be active in both programs. Examples: master while enrolled in a doctoral program or graduate certificate while enrolled in a graduate degree program.)