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OU Supercomputing Center for Education & Research (OSCER) / Hardware & Software / Software
OU Supercomputing Center for Education & Research (OSCER) / Hardware & Software / Software

Software List

To get the most up-to-date list, log into the Schooner system and run module avail.

Note about software availability:
Some of the software listed below have licensing restrictions and can only be used by eligible users. Please contact us at support@oscer.ou.edu if you have questions about whether you can use a particular software.

454DataAnalysis
Version Toolchain / Variant
2.9  
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ABAWACA
Version Toolchain / Variant
1.00 foss-2018b
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ABySS
Version Toolchain / Variant
1.5.2 goolf-1.4.10
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ACTC
Version Toolchain / Variant
1.1 GCCcore-6.4.0
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AMOS
Version Toolchain / Variant
3.1.0 goolf-1.4.10
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ANSYS_Workbench
Version Toolchain / Variant
17.2  
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ANTLR
Version Toolchain / Variant
2.7.7 intel-2015b-Python-2.7.10
2.7.7 intel-2018a (Current Default Version)
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ANUGA
Version Toolchain / Variant
2.0.2 foss-2016b
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APR
Version Toolchain / Variant
1.6.3 GCCcore-7.3.0
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APR-util
Version Toolchain / Variant
1.6.1 GCCcore-7.3.0
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ATK
Version Toolchain / Variant
2.20.0 GCC-4.9.3-2.25
2.20.0 intel-2016a
2.27.1 foss-2017b (Current Default Version)
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ATLAS
Version Toolchain / Variant
3.10.1 GCC-4.9.3-2.25-LAPACK-3.5.0
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ATSAS
Version Toolchain / Variant
2.8.4 intel-2016a
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AUGUSTUS
Version Toolchain / Variant
3.3.2 foss-2018b-Python-2.7.15
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AdapterRemoval
Version Toolchain / Variant
2.2.2 foss-2018a
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Amber
Version Toolchain / Variant
16 gcc-4.9.3-2.25-cuda
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AutoDock
Version Toolchain / Variant
4.2.6 intel-2016a
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AutoDockFR
Version Toolchain / Variant
mgltools2_1.0 GCC-4.9.3-2.25
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AutoDockVina
Version Toolchain / Variant
1.1.2  
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Autoconf
Version Toolchain / Variant
2.69 foss-2016a
2.69 foss-2016b
2.69 foss-2017b
2.69 GCC-4.9.2
2.69 GCC-4.9.3-2.25
2.69 GCCcore-4.9.3
2.69 GCCcore-6.4.0
2.69 GCCcore-7.3.0
2.69 GCCcore-8.2.0
2.69 GNU-4.9.3-2.25
2.69 goolf-1.4.10
2.69 intel-2016a (Current Default Version)
2.69 intel-2018a
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Automake
Version Toolchain / Variant
1.14 intel-2016a
1.15 foss-2016a
1.15 foss-2016b
1.15 GCC-4.9.2
1.15 GCC-4.9.3-2.25
1.15 GCCcore-4.9.3
1.15 GNU-4.9.3-2.25
1.15 intel-2016a (Current Default Version)
1.15 intel-2018a
1.15.1 GCCcore-6.4.0
1.16.1 foss-2017b
1.16.1 foss-2018a
1.16.1 GCCcore-7.3.0
1.16.1 GCCcore-8.2.0
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Autotools
Version Toolchain / Variant
20150215 foss-2016a
20150215 foss-2016b
20150215 GCC-4.9.2
20150215 GCC-4.9.3-2.25
20150215 GCCcore-4.9.3
20150215 GNU-4.9.3-2.25
20150215 intel-2016a (Current Default Version)
20150215 intel-2018a
20170619 GCCcore-6.4.0
20180311 foss-2017b
20180311 foss-2018a
20180311 GCCcore-7.3.0
20180311 GCCcore-8.2.0
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BBMap
Version Toolchain / Variant
38.36 intel-2016a
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BCFtools
Version Toolchain / Variant
1.9 foss-2018b
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BEDTools
Version Toolchain / Variant
2.25.0 intel-2016a
2.26.0 intel-2016a
2.27.1 foss-2018b (Current Default Version)
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BLAST
Version Toolchain / Variant
2.2.22 Linux_x86_64
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BLAST+
Version Toolchain / Variant
2.2.30 foss-2016b
2.2.30 goolf-1.4.10
2.9.0 foss-2018b (Current Default Version)
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BLAT
Version Toolchain / Variant
3.5 goolf-1.4.10
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BUSCO
Version Toolchain / Variant
3.0.2 foss-2018b-Python-2.7.15
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BWA
Version Toolchain / Variant
0.7.13 intel-2016a
0.7.15 intel-2016a
0.7.17 foss-2018b (Current Default Version)
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BamTools
Version Toolchain / Variant
2.5.1 foss-2018b
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Bazel
Version Toolchain / Variant
0.4.0 2016-11-04
0.11.1 GCCcore-6.4.0
0.12.0 GCCcore-6.4.0 (Current Default Version)
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Beast
Version Toolchain / Variant
2.5.1 foss-2018a
2.5.2 foss-2017b (Current Default Version)
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Bio-Coordinate
Version Toolchain / Variant
1.007001 foss-2016b-BioPerl-1.7.0
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Bio-Graphics
Version Toolchain / Variant
2.40 foss-2016b-BioPerl-1.7.0
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BioPerl
Version Toolchain / Variant
1.6.1 goolf-1.4.10-Perl-5.16.3
1.7.0 foss-2016b-Perl-5.24.0 (Current Default Version)
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Biopython
Version Toolchain / Variant
1.61 goolf-1.4.10-Python-2.7.3
1.68 intel-2016a-Python-2.7.10
1.72 foss-2018b-Python-2.7.15
1.72 foss-2018b-Python-3.6.6 (Current Default Version)
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Bismark
Version Toolchain / Variant
0.10.1 goolf-1.4.10
0.16.3 intel-2016a (Current Default Version)
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Bison
Version Toolchain / Variant
2.7 goolf-1.4.10
3.0.4 foss-2016b
3.0.4 foss-2017b
3.0.4 GCC-4.9.3-binutils-2.25
3.0.4 GCC-4.9.3-2.25
3.0.4 GCCcore-4.9.3
3.0.4 GCCcore-5.4.0
3.0.4 GCCcore-6.4.0
3.0.4 GCCcore-7.2.0
3.0.4 GCCcore-7.3.0
3.0.4 intel-2015b
3.0.4 intel-2016a
3.0.4 iompi-2015.03
3.0.4  
3.0.5 GCCcore-6.4.0
3.0.5 GCCcore-7.3.0
3.0.5 GCCcore-8.2.0
3.0.5  
3.3.2 intel-2018a (Current Default Version)
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Boost
Version Toolchain / Variant
1.51.0 goolf-1.4.10
1.53.0 goolf-1.4.10
1.57.0 foss-2016b
1.57.0 goolf-1.4.10
1.59.0 intel-2016a-Python-2.7.10
1.60.0 foss-2016a
1.61.0 foss-2016b-Python-2.7.12
1.61.0 foss-2016b
1.61.0 GCC-4.9.3-2.25
1.61.0 intel-2016a-Python-2.7.11
1.61.0 intel-2016a
1.65.1 foss-2016b
1.67.0 foss-2018a
1.67.0 foss-2018b (Current Default Version)
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Boost.Python
Version Toolchain / Variant
1.67.0 foss-2018b-Python-2.7.15
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Bowtie
Version Toolchain / Variant
1.1.2 foss-2016a
1.2.2 foss-2017b
1.2.2 foss-2018b (Current Default Version)
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Bowtie2
Version Toolchain / Variant
2.0.2 goolf-1.4.10
2.2.4 goolf-1.4.10
2.2.9 foss-2016a
2.2.9 intel-2016a
2.3.4.1 foss-2017b
2.3.4.2 foss-2018b (Current Default Version)
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CD-HIT
Version Toolchain / Variant
4.6.1 goolf-1.4.10-2012-08-27
4.8.1 foss-2018b (Current Default Version)
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CDO
Version Toolchain / Variant
1.7.1 intel-2016a
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CESM-deps
Version Toolchain / Variant
2 foss-2018b
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CGAL
Version Toolchain / Variant
4.8.1 intel-2016a
4.11.1 foss-2018a-Python-2.7.14 (Current Default Version)
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CGI
Version Toolchain / Variant
4.35 foss-2016b-Perl-5.24.0
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CMake
Version Toolchain / Variant
2.8.12 goolf-1.4.10
3.3.2 GNU-4.9.3-2.25
3.4.1 foss-2016a
3.4.1 intel-2015b
3.4.1 intel-2016a
3.4.3 foss-2017b
3.4.3 GCC-4.9.3-2.25
3.4.3 intel-2016a
3.4.3 iompi-2015.03
3.5.1 intel-2016a
3.5.2 foss-2016a
3.5.2 foss-2016b
3.5.2 GCC-4.9.3-2.25
3.5.2 intel-2016a
3.5.2  
3.6.1 foss-2016b
3.6.1 GCCcore-4.9.3
3.6.1 intel-2016a
3.9.1 GCCcore-6.4.0
3.9.4 GCCcore-6.4.0
3.9.5 GCCcore-6.4.0
3.9.5 intel-2016a
3.9.6  
3.10.2 GCCcore-6.4.0
3.11.4 foss-2017b
3.11.4 GCCcore-6.4.0
3.11.4 GCCcore-7.3.0
3.12.1 GCCcore-7.3.0
3.12.1 intel-2016a
3.13.3 GCCcore-8.2.0 (Current Default Version)
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CONCOCT
Version Toolchain / Variant
1.0.0 foss-2018b-Python-2.7.15
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CP2K
Version Toolchain / Variant
6.1 intel-2018a
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CUDA
Version Toolchain / Variant
5.5.22 GCC-4.8.2
7.5.18 GCC-4.9.3-2.25
7.5.18  
8.0.44 GCC-4.9.3-2.25
8.0.44 intel-2016a
8.0.61_375.26 GCC-5.4.0-2.26
9.1.85 GCC-6.4.0-2.28
9.2.88  
10.1.105 GCC-8.2.0-2.31.1 (Current Default Version)
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Caffe
Version Toolchain / Variant
1.0.0 rc5-GCC-4.9.3-2.25
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CellRanger
Version Toolchain / Variant
2.1.1  
3.0.2 (Current Default Version)
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CheckM
Version Toolchain / Variant
1.0.13 foss-2018b-Python-2.7.15
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Chimera
Version Toolchain / Variant
1.11.2 linux_x86_64
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Chiron
Version Toolchain / Variant
0.3 intel-2016a-GPU-Python-2.7.12
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ClustalW2
Version Toolchain / Variant
2.1 goolf-1.4.10
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CoreNLP
Version Toolchain / Variant
3.9.1 Java-1.8.0_152
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CppUnit
Version Toolchain / Variant
1.12.1 foss-2016b
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Cufflinks
Version Toolchain / Variant
2.2.1 intel-2016a-Python-2.7.10-Boost-1.59.0
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DAS_Tool
Version Toolchain / Variant
1.1.1 foss-2018b-R-3.5.1-Python-2.7.15
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DBus
Version Toolchain / Variant
1.13.6 GCCcore-6.4.0
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DIAMOND
Version Toolchain / Variant
0.8.5 intel-2016a
0.8.33 foss-2016b
0.9.22 foss-2018b (Current Default Version)
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DendroPy
Version Toolchain / Variant
4.4.0 foss-2018b-Python-2.7.15
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Doxygen
Version Toolchain / Variant
1.8.3.1 goolf-1.4.10
1.8.10 intel-2015b
1.8.10 intel-2016a
1.8.11 foss-2016b
1.8.11 intel-2016a
1.8.11 iompi-2015.03 (Current Default Version)
1.8.13 foss-2017b
1.8.13 GCCcore-6.4.0
1.8.14 GCCcore-7.3.0
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EMBOSS
Version Toolchain / Variant
6.6.0 foss-2018b
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ESMF
Version Toolchain / Variant
7.1.0r foss-2018b
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Eigen
Version Toolchain / Variant
3.2.7 intel-2016a
3.2.9 intel-2016a
3.3.3 foss-2017b
3.3.4 (Current Default Version)
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Exonerate
Version Toolchain / Variant
2.4.0 foss-2018b
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FASTA
Version Toolchain / Variant
36.3.5e goolf-1.4.10
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FASTX-Toolkit
Version Toolchain / Variant
0.0.13.2 goolf-1.4.10
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FFTW
Version Toolchain / Variant
3.3.3 gompi-1.4.10
3.3.4 gompi-2016a
3.3.4 gompi-2016b
3.3.4 intel-2016a
3.3.6 gompi-2017b
3.3.7 gompi-2018a
3.3.7 gompic-2018a
3.3.7 intel-2018a
3.3.8 gompi-2018b
3.3.8 gompic-2019a (Current Default Version)
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FFmpeg
Version Toolchain / Variant
3.0.2 GCC-4.9.3-2.25
3.0.2 intel-2016a
3.4.2 foss-2017b (Current Default Version)
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FIAT
Version Toolchain / Variant
1.6.0 foss-2016b-Python-2.7.12
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FLTK
Version Toolchain / Variant
1.3.3 intel-2016a
1.3.4 foss-2017b (Current Default Version)
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FLUENT
Version Toolchain / Variant
16.2  
17.2 (Current Default Version)
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FastME
Version Toolchain / Variant
2.1.6.1 foss-2018b
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FastQC
Version Toolchain / Variant
0.10.1 Java-1.7.0_80
0.11.5 Java-1.8.0_91 (Current Default Version)
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FragGeneScan
Version Toolchain / Variant
1.30 foss-2016b
1.30 intel-2016a
1.31 foss-2017b
1.31 foss-2018b (Current Default Version)
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FragGeneScan-Plus
Version Toolchain / Variant
git master-foss-2016b
git master-intel-2016a (Current Default Version)
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FriBidi
Version Toolchain / Variant
1.0.1 foss-2017b
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GAMESS-US
Version Toolchain / Variant
20180214 R1-intel-2016a
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GAMS
Version Toolchain / Variant
27.1.0  
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GATK
Version Toolchain / Variant
3.6 Java-1.8.0_91
3.8 0-Java-1.8.0_141
4.1.0.0 intel-2016a-Python-3.6.3 (Current Default Version)
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GCC
Version Toolchain / Variant
4.6.3  
4.7.2  
4.8.1  
4.8.2  
4.9.2  
4.9.3 binutils-2.25
4.9.3 2.25
5.4.0 2.26
6.4.0 2.28
7.2.0 2.29
7.3.0 2.30
8.2.0 2.31.1 (Current Default Version)
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GCCcore
Version Toolchain / Variant
4.9.3  
5.4.0  
6.4.0  
7.2.0  
7.3.0  
8.2.0 (Current Default Version)
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GD
Version Toolchain / Variant
2.53 foss-2016b-Perl-5.24.0
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GDAL
Version Toolchain / Variant
2.0.0 intel-2016a
2.0.2 intel-2016a
2.1.0 foss-2016b
2.1.0 intel-2016a
2.2.3 foss-2017b-Python-2.7.14
2.2.3 foss-2018b-Python-2.7.15 (Current Default Version)
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GEOS
Version Toolchain / Variant
3.5.0 intel-2016a-Python-2.7.11
3.5.0 intel-2016a-Python-2.7.12
3.6.2 foss-2017b-Python-2.7.14
3.6.2 foss-2018b-Python-2.7.15
3.6.2 foss-2018b-Python-3.6.6 (Current Default Version)
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GLPK
Version Toolchain / Variant
4.65 foss-2017b
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GLib
Version Toolchain / Variant
2.44.1 intel-2016a
2.48.0 GCC-4.9.3-2.25
2.48.0 intel-2016a
2.49.5 foss-2016b
2.49.5 intel-2016a
2.53.5 GCCcore-6.4.0
2.54.3 foss-2017b
2.54.3 GCCcore-6.4.0
2.54.3 GCCcore-7.3.0 (Current Default Version)
Back to the list

GMP
Version Toolchain / Variant
6.0.0a GCC-4.9.2
6.0.0a GCC-4.9.3-2.25
6.1.0 foss-2016a
6.1.0 intel-2016a
6.1.1 foss-2016b
6.1.1 intel-2016a
6.1.1 intel-2018a
6.1.2 foss-2017b
6.1.2 GCCcore-6.4.0
6.1.2 GCCcore-7.3.0
6.1.2 intel-2016a (Current Default Version)
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GMT
Version Toolchain / Variant
4.5.14 intel-2016a
5.2.1 intel-2016a (Current Default Version)
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GNU
Version Toolchain / Variant
4.9.3 2.25
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GObject-Introspection
Version Toolchain / Variant
1.48.0 GCC-4.9.3-2.25
1.48.0 intel-2016a
1.53.5 foss-2017b-Python-2.7.14
1.54.1 foss-2017b-Python-2.7.14 (Current Default Version)
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GPUAutodock
Version Toolchain / Variant
4.0.0 CUDA-9.2.88
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GROMACS
Version Toolchain / Variant
4.6.5 goolf-1.4.10-hybrid
5.1.2 foss-2016a-hybrid
5.1.2 foss-2016b-hybrid-gpu
2018.1 foss-2016b-hybrid-gpu
2019.2 fosscuda-2019a (Current Default Version)
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GSL
Version Toolchain / Variant
1.16 goolf-1.4.10
1.16 intel-2015b
1.16 intel-2016a
2.1 intel-2016a
2.3 foss-2016b
2.4 GCCcore-6.4.0
2.4 intel-2018a
2.5 foss-2017b
2.5 GCC-7.3.0-2.30 (Current Default Version)
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GTK+
Version Toolchain / Variant
2.24.30 GCC-4.9.3-2.25
2.24.30 intel-2016a
2.24.32 foss-2017b (Current Default Version)
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Gaussian
Version Toolchain / Variant
g09  
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Gaussview
Version Toolchain / Variant
g09  
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Gdk-Pixbuf
Version Toolchain / Variant
2.35.1 GCC-4.9.3-2.25
2.35.1 intel-2016a
2.36.11 foss-2017b (Current Default Version)
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Ghostscript
Version Toolchain / Variant
9.16 intel-2016a
9.19 intel-2016a
9.22 foss-2017b-cairo-1.14.8 (Current Default Version)
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GrADS
Version Toolchain / Variant
2.1.1.b0 bin
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GraphicsMagick
Version Toolchain / Variant
1.3.28 foss-2017b
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Guile
Version Toolchain / Variant
1.8.8 intel-2018a
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HDF
Version Toolchain / Variant
4.2.13 iomkl-2018a-no-netcdf
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HDF5
Version Toolchain / Variant
1.8.10 patch1-goolf-1.4.10
1.8.13 intel-2015b
1.8.13 intel-2016a
1.8.15 patch1-intel-2015b
1.8.16 GCC-4.9.3-2.25
1.8.16 intel-2016a
1.8.16 iompi-2015.03
1.8.17 foss-2016b
1.8.17 intel-2016a
1.8.18 intel-2016a
1.8.19 intel-2018a
1.10.1 foss-2017b-serial
1.10.1 foss-2017b
1.10.1 foss-2018a
1.10.1 intel-2016a-serial
1.10.1 intel-2016a
1.10.1 iomkl-2018a
1.10.1 iompi-2016.07 (Current Default Version)
1.10.2 foss-2018b
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HISAT2
Version Toolchain / Variant
2.1.0 foss-2017b
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HMMER
Version Toolchain / Variant
3.1b1 foss-2016b
3.1b1 goolf-1.4.10
3.2.1 foss-2017b
3.2.1 foss-2018b (Current Default Version)
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HPL
Version Toolchain / Variant
2.1 intel-2016a
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HTSeq
Version Toolchain / Variant
0.6.1p1 intel-2016a-Python-2.7.10
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HTSlib
Version Toolchain / Variant
1.9 foss-2018b
1.9 GCC-6.4.0-2.28 (Current Default Version)
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Hadoop
Version Toolchain / Variant
2.6.0 cdh5.8.0-native
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HarfBuzz
Version Toolchain / Variant
1.2.7 GCC-4.9.3-2.25
1.2.7 intel-2016a
1.7.1 foss-2017b
1.7.5 foss-2017b (Current Default Version)
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Hypre
Version Toolchain / Variant
2.11.1 foss-2016b
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ICU
Version Toolchain / Variant
61.1 GCCcore-7.3.0
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IDBA-UD
Version Toolchain / Variant
1.1.1 goolf-1.4.10
1.1.3 foss-2017b
1.1.3 foss-2018b (Current Default Version)
Back to the list

ImageMagick
Version Toolchain / Variant
7.0.4 0-intel-2016a
7.0.7 30-foss-2017b-Ghostscript-9.22-cairo-1.14.8 (Current Default Version)
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JUnit
Version Toolchain / Variant
4.12 Java-1.8.0_91
4.12 Java-1.8.0_92
4.12 Java-1.8.0_191 (Current Default Version)
Back to the list

JasPer
Version Toolchain / Variant
1.900.1 GCC-4.9.3-2.25
1.900.1 intel-2016a
1.900.1 iompi-2015.03
2.0.14 foss-2017b
2.0.14 GCCcore-6.4.0
2.0.14 GCCcore-7.3.0 (Current Default Version)
Back to the list

Java
Version Toolchain / Variant
1.7.0_21  
1.7.0_60  
1.7.0_80  
1.8.0_45  
1.8.0_66  
1.8.0_77  
1.8.0_91  
1.8.0_92  
1.8.0_121  
1.8.0_141  
1.8.0_152  
1.8.0_162  
1.8.0_181  
1.8.0_191 (Current Default Version)
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Jellyfish
Version Toolchain / Variant
2.2.6 foss-2018a
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Keras
Version Toolchain / Variant
2.0.4 intel-2016a-Python-2.7.12
2.2.0 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

LAME
Version Toolchain / Variant
3.100 GCCcore-6.4.0
Back to the list

LAMMPS
Version Toolchain / Variant
11Aug17 gompi-2017b
12Dec18 gompi-2016a
14May16 gompi-2016a
16Mar18 gompi-2017b
17Nov16 gompi-2016a (Current Default Version)
17Nov16gong gompi-2016a
22Aug18 foss-2018a
22Aug18 goolfc-2018a-gpu
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LLVM
Version Toolchain / Variant
3.8.0 intel-2016a
3.8.1 foss-2016b
3.8.1 intel-2016a
5.0.0 foss-2017b
5.0.1 GCCcore-6.4.0
6.0.0 GCCcore-7.3.0 (Current Default Version)
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LMDB
Version Toolchain / Variant
0.9.18 GCC-4.9.3-2.25
0.9.22 GCCcore-7.3.0 (Current Default Version)
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LevelDB
Version Toolchain / Variant
1.18 GCC-4.9.3-2.25
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LibTIFF
Version Toolchain / Variant
4.0.4 intel-2016a
4.0.6 foss-2016b
4.0.6 GCC-4.9.3-2.25
4.0.6 intel-2016a
4.0.9 foss-2017b
4.0.9 GCCcore-6.4.0
4.0.9 GCCcore-7.3.0 (Current Default Version)
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LibUUID
Version Toolchain / Variant
1.0.3 GCCcore-6.4.0
1.0.3 intel-2015b (Current Default Version)
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Libint
Version Toolchain / Variant
1.1.6 intel-2018a
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LittleCMS
Version Toolchain / Variant
2.7 intel-2016a
2.9 foss-2017b (Current Default Version)
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Loci
Version Toolchain / Variant
4.0 beta-8-intel-2016a
4.0 beta-10-intel-2016a (Current Default Version)
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M4
Version Toolchain / Variant
1.4.16 goolf-1.4.10
1.4.17 foss-2016a
1.4.17 foss-2016b
1.4.17 foss-2017b
1.4.17 GCC-4.9.2
1.4.17 GCC-4.9.3-binutils-2.25
1.4.17 GCC-4.9.3-2.25
1.4.17 GCCcore-4.9.3
1.4.17 GCCcore-5.4.0
1.4.17 GCCcore-6.4.0
1.4.17 GNU-4.9.3-2.25
1.4.17 intel-2015b
1.4.17 intel-2016a
1.4.17 iompi-2015.03
1.4.17  
1.4.18 foss-2017b
1.4.18 GCCcore-5.4.0
1.4.18 GCCcore-6.4.0
1.4.18 GCCcore-7.2.0
1.4.18 GCCcore-7.3.0
1.4.18 GCCcore-8.2.0
1.4.18 intel-2016a
1.4.18 intel-2018a
1.4.18 (Current Default Version)
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MACS2
Version Toolchain / Variant
2.1.2.1 intel-2016a-Python-2.7.10
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MACSE
Version Toolchain / Variant
2.03 Java-1.8.0_191
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MAFFT
Version Toolchain / Variant
7.130 goolf-1.4.10-with-extensions
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MARE
Version Toolchain / Variant
0.1.2 GCCcore-6.4.0-rc
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MATLAB
Version Toolchain / Variant
2015a (Current Default Version)
2017a  
2018a Prerelease
2018a  
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MCL
Version Toolchain / Variant
14.137 foss-2018b
14.137 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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MEGAHIT
Version Toolchain / Variant
1.0.6 intel-2016a
1.1.4 foss-2018b-Python-2.7.15 (Current Default Version)
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MEGAN
Version Toolchain / Variant
5.11.3  
6.6.0 (Current Default Version)
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METIS
Version Toolchain / Variant
5.1.0 foss-2016b
5.1.0 foss-2018b
5.1.0 GCCcore-6.4.0
5.1.0 intel-2016a (Current Default Version)
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MMseqs2
Version Toolchain / Variant
8 fac81-foss-2018b
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MPFR
Version Toolchain / Variant
3.1.4 intel-2016a
4.0.1 GCCcore-6.4.0 (Current Default Version)
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MS2
Version Toolchain / Variant
2.0 intel-2016a
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MUMPS
Version Toolchain / Variant
5.0.1 foss-2016b-parmetis
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MUMmer
Version Toolchain / Variant
3.23 goolf-1.4.10
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MUSCLE
Version Toolchain / Variant
3.8.1551 intel-2016a
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MVAPICH2
Version Toolchain / Variant
2.2rc2 iccifort-2016.1.150-GCC-4.9.3-2.25
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Madagascar
Version Toolchain / Variant
1.7 foss-2016b
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Mako
Version Toolchain / Variant
1.0.4 foss-2016b-Python-2.7.12
1.0.4 intel-2016a-Python-2.7.12
1.0.7 foss-2017b-Python-2.7.14
1.0.7 foss-2018a-Python-2.7.14
1.0.7 foss-2018b-Python-2.7.15 (Current Default Version)
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Maq
Version Toolchain / Variant
0.7.0  
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Mathematica
Version Toolchain / Variant
9.0.1  
11.0.1 (Current Default Version)
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Maven
Version Toolchain / Variant
3.3.9  
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MaxBin
Version Toolchain / Variant
2.2.6 foss-2017b-Perl-5.28.0
2.2.6 foss-2018b-Perl-5.28.0 (Current Default Version)
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MeGAMerge
Version Toolchain / Variant
1.1  
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Mesa
Version Toolchain / Variant
11.1.2 GCC-4.9.3-2.25
11.2.1 intel-2016a
12.0.2 foss-2016b
12.0.2 intel-2016a
17.2.5 foss-2017b
17.3.6 foss-2017b
17.3.6 foss-2018a
18.1.1 foss-2018b (Current Default Version)
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MetaBAT
Version Toolchain / Variant
2.12.1  
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MetaPhlAn2
Version Toolchain / Variant
2.7.8 foss-2018b-Python-3.6.6
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MetaVelvet
Version Toolchain / Variant
1.2.01 goolf-1.4.10
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Miniconda2
Version Toolchain / Variant
4.4.10  
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Miniconda3
Version Toolchain / Variant
4.4.10  
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Mothur
Version Toolchain / Variant
1.30.2 goolf-1.4.10
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MrBayes
Version Toolchain / Variant
3.2.6 foss-2018a
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NAMD
Version Toolchain / Variant
2.10 intel-2016a-mpi
2.11 intel-2016a-mpi
2.11 intel-2016aMIC (Current Default Version)
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NASM
Version Toolchain / Variant
2.11.05 intel-2016a
2.11.08 intel-2016a
2.12.01 GCC-4.9.3-2.25
2.12.01 intel-2016a
2.12.02 foss-2016b
2.12.02 intel-2016a (Current Default Version)
2.13.01 foss-2017b
2.13.01 GCCcore-6.4.0
2.13.02 GCCcore-6.4.0
2.13.03 foss-2017b
2.13.03 GCCcore-6.4.0
2.13.03 GCCcore-7.3.0
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NCL
Version Toolchain / Variant
6.3.0 OPeNDAP-GCC-4.8.2
6.3.0 (Current Default Version)
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NCO
Version Toolchain / Variant
4.4.7 intel-2015b-Python-2.7.10
4.7.6 intel-2018a (Current Default Version)
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NGS
Version Toolchain / Variant
1.2.3 intel-2016a
2.9.1 foss-2017b-Java-1.8.0_191 (Current Default Version)
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NLopt
Version Toolchain / Variant
2.4.2 foss-2016b
2.4.2 GCCcore-7.3.0
2.4.2 intel-2016a (Current Default Version)
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NSPR
Version Toolchain / Variant
4.20 GCCcore-6.4.0
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NSS
Version Toolchain / Variant
3.39 GCCcore-6.4.0
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NTL
Version Toolchain / Variant
10.5.0 intel-2016a
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NVIDIA_GPU_SDK
Version Toolchain / Variant
4.0.17 GCC-4.9.3-2.25
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NWChem
Version Toolchain / Variant
6.8.revision47 intel-2018a-2017-12-14-Python-2.7.14
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ORCA
Version Toolchain / Variant
4.0.1 OpenMPI-2.0.2
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OpenBLAS
Version Toolchain / Variant
0.2.6 gompi-1.4.10-LAPACK-3.4.2
0.2.9 intel-2016a-LAPACK-3.5.0
0.2.15 GCC-4.9.3-2.25-LAPACK-3.6.0
0.2.18 GCC-5.4.0-2.26-LAPACK-3.6.1
0.2.19 foss-2016b-LAPACK-3.7.0
0.2.20 GCC-6.4.0-2.28
0.3.1 GCC-7.3.0-2.30
0.3.5 GCC-8.2.0-2.31.1 (Current Default Version)
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OpenCL
Version Toolchain / Variant
2.2 GCC-4.9.3-2.25
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OpenCV
Version Toolchain / Variant
3.1.0 GCC-4.9.3-2.25
3.1.0 intel-2016a
3.4.1 foss-2017b-Python-3.6.4 (Current Default Version)
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OpenFOAM
Version Toolchain / Variant
v1612+ foss-2018a
4.0 intel-2016a (Current Default Version)
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OpenMPI
Version Toolchain / Variant
1.4.5 GCC-4.6.3-no-OFED
1.6.4 GCC-4.7.2
1.6.5 GCC-4.8.1
1.6.5 GCC-4.8.2
1.8.8 GNU-4.9.3-2.25
1.8.8 iccifort-2015.3.187-GNU-4.9.3-2.25
1.10.2 GCC-4.9.3-2.25
1.10.3 GCC-5.4.0-2.26
1.10.3 iccifort-2016.3.210-GCC-5.4.0-2.26
2.0.2 GCC-6.4.0-2.28
2.1.1 GCC-6.4.0-2.28 (Current Default Version)
2.1.2 GCC-6.4.0-2.28
2.1.2 gcccuda-2018a
2.1.2 iccifort-2018.1.163-GCC-6.4.0-2.28
3.1.1 GCC-7.3.0-2.30
3.1.3 gcccuda-2019a
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OpenPGM
Version Toolchain / Variant
5.2.122 goolf-1.4.10
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OpenSSL
Version Toolchain / Variant
1.0.2h intel-2016a
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OrthoFinder
Version Toolchain / Variant
2.3.3 foss-2018b-Python-2.7.15
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PAML
Version Toolchain / Variant
4.9h intel-2016a
Back to the list

PCRE
Version Toolchain / Variant
8.37 intel-2016a
8.38 foss-2016b
8.38 GCC-4.9.3-2.25
8.38 intel-2016a
8.39 foss-2016b
8.39 intel-2016a
8.41 foss-2017b
8.41 GCCcore-6.4.0
8.41 GCCcore-7.3.0 (Current Default Version)
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PEITHO
Version Toolchain / Variant
0.1.3 intel-2016a-Python-2.7.11
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PETSc
Version Toolchain / Variant
3.7.5 foss-2016b-downloaded-deps
3.7.5 intel-2016a-shared-Python-2.7.11
3.9.1 intel-2016a-downloaded-deps (Current Default Version)
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PETSc-lite
Version Toolchain / Variant
3.7.5 foss-2016b-Python-2.7.12
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PFLOTRAN
Version Toolchain / Variant
current intel-2016a
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PIL
Version Toolchain / Variant
1.1.7 foss-2016b-Python-2.7.12
1.1.7 intel-2016a-Python-2.7.11
1.1.7 intel-2016a-Python-2.7.12 (Current Default Version)
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PLINK
Version Toolchain / Variant
1.9b_4.1 x86_64
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PLUMED
Version Toolchain / Variant
2.4.0 intel-2018a
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PLplot
Version Toolchain / Variant
5.13.0 foss-2017b-Java-1.8.0_181-Python-2.7.14
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PROJ
Version Toolchain / Variant
4.9.2 foss-2016b
4.9.2 intel-2016a
4.9.3 foss-2017b
5.0.0 foss-2018b (Current Default Version)
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Pandoc
Version Toolchain / Variant
2.5  
Back to the list

Pango
Version Toolchain / Variant
1.40.1 GCC-4.9.3-2.25
1.40.1 intel-2016a
1.41.0 foss-2017b
1.41.1 foss-2017b (Current Default Version)
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Panoply
Version Toolchain / Variant
4.8.10 Java-1.8.0_91
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ParMETIS
Version Toolchain / Variant
4.0.3 foss-2016b
4.0.3 intel-2015b
4.0.3 intel-2016a-shared (Current Default Version)
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ParaView
Version Toolchain / Variant
5.1.2 intel-2016a-mpi
5.4.1 foss-2016b-mpi
5.4.1 foss-2018a-mpi (Current Default Version)
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Perl
Version Toolchain / Variant
5.16.3 goolf-1.4.10
5.20.3 foss-2016a
5.20.3 intel-2016a
5.22.1 foss-2016a-bare
5.24.0 foss-2016b
5.26.0 foss-2017b
5.26.0 GCCcore-6.4.0
5.26.1 GCCcore-6.4.0
5.28.0 foss-2017b
5.28.0 GCCcore-7.3.0 (Current Default Version)
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Pillow
Version Toolchain / Variant
5.0.0 foss-2018a-Python-3.6.4
5.3.0 foss-2018b-Python-3.6.6 (Current Default Version)
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PorthoMCL
Version Toolchain / Variant
05072019 foss-2018b-Python-2.7.15
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Prodigal
Version Toolchain / Variant
2.6.3 GCC-4.9.3-2.25
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PuLP
Version Toolchain / Variant
1.6.1 intel-2016a-Python-2.7.10
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PyCUDA
Version Toolchain / Variant
2016.1.2 intel-2016a-Python-2.7.11
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PyQt
Version Toolchain / Variant
4.11.4 intel-2016a-Python-2.7.11
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PyYAML
Version Toolchain / Variant
3.12 foss-2018a-Python-3.6.4
3.12 intel-2016a-Python-2.7.12 (Current Default Version)
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Pylint
Version Toolchain / Variant
1.9.3 foss-2018b-Python-2.7.15
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Pysam
Version Toolchain / Variant
0.15.1 foss-2018b-Python-2.7.15
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Python
Version Toolchain / Variant
2.7.3 goolf-1.4.10
2.7.9 intel-2016a
2.7.10 GCC-4.9.3-2.25-bare
2.7.10 GCC-4.9.3-2.25
2.7.10 intel-2015b
2.7.10 intel-2016a
2.7.11 foss-2016a
2.7.11 intel-2016a
2.7.12 foss-2016b
2.7.12 intel-2016a
2.7.14 foss-2017b
2.7.14 foss-2018a
2.7.14 GCCcore-6.4.0-bare
2.7.14 intel-2018a
2.7.15 foss-2018b
2.7.15 GCCcore-7.3.0-bare
3.5.1 intel-2016a
3.6.3 intel-2016a
3.6.4 foss-2017b
3.6.4 foss-2018a
3.6.4 intel-2018a
3.6.6 foss-2018b (Current Default Version)
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QIIME
Version Toolchain / Variant
1.9.1 intel-2016a-Python-2.7.10-numpy-1.10.4
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QIIME2
Version Toolchain / Variant
2018.11 Miniconda2
2018.11 Miniconda3
2019.4 Miniconda3 (Current Default Version)
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QUAST
Version Toolchain / Variant
5.0.2 foss-2018b-Python-2.7.15
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Qt
Version Toolchain / Variant
4.8.7 intel-2016a
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Qt5
Version Toolchain / Variant
5.7.0 foss-2016b
5.7.0 intel-2016a
5.8.0 foss-2017b
5.10.1 foss-2018a (Current Default Version)
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QuantumESPRESSO
Version Toolchain / Variant
5.0.2 goolf-1.4.10
5.2.1 intel-2016a
5.4.0 intel-2016a (Current Default Version)
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Qwt
Version Toolchain / Variant
5.2.0 intel-2016a
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R
Version Toolchain / Variant
3.3.2 foss-2016b
3.3.2 intel-2016a
3.4.0 intel-2016a (Current Default Version)
3.4.1 foss-2016b-X11-20160819
3.5.1 foss-2018b-Python-2.7.15
3.5.1 intel-2016a
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RADProc
Version Toolchain / Variant
master foss-2018a
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RAxML
Version Toolchain / Variant
8.1.1 goolf-1.4.10-mpi-avx
8.2.4 intel-2015b-hybrid-avx2 (Current Default Version)
Back to the list

RDP-Classifier
Version Toolchain / Variant
2.7 Java-1.7.0_60
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RIP
Version Toolchain / Variant
4.5 goolf-1.4.10
Back to the list

RSEM
Version Toolchain / Variant
1.3.0 intel-2016a
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RSEQtools
Version Toolchain / Variant
0.6 goolf-1.4.10
Back to the list

Ray
Version Toolchain / Variant
2.3.1 intel-2016a
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Rosetta
Version Toolchain / Variant
2016.46.59086 foss-2016b
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Ruby
Version Toolchain / Variant
2.6.1 GCCcore-7.3.0
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SAMtools
Version Toolchain / Variant
0.1.20 intel-2016a
1.2 goolf-1.4.10 (Current Default Version)
1.3 intel-2016a
1.9 foss-2018b
1.9 intel-2016a
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SCOTCH
Version Toolchain / Variant
6.0.4 foss-2016b
6.0.4 intel-2016a
6.0.6 foss-2018a (Current Default Version)
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SCons
Version Toolchain / Variant
2.5.0 foss-2016b-Python-2.7.12
3.0.1 GCCcore-7.3.0-Python-2.7.15-bare (Current Default Version)
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SIP
Version Toolchain / Variant
4.18 intel-2016a-Python-2.7.11
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SMALT
Version Toolchain / Variant
0.7.5 goolf-1.4.10
Back to the list

SOAPdenovo
Version Toolchain / Variant
1.05 goolf-1.4.10
Back to the list

SPAdes
Version Toolchain / Variant
3.9.0 foss-2016a
3.13.0 foss-2018b
3.13.1 foss-2018b (Current Default Version)
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SPECFEM2D
Version Toolchain / Variant
stable intel-2016a
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SQLite
Version Toolchain / Variant
3.8.8.1 intel-2016a
3.8.10 GCC-4.9.3-2.25
3.8.10.2 GCC-4.9.3-2.25
3.8.10.2 intel-2015b
3.8.10.2 intel-2016a
3.9.2 foss-2016a
3.9.2 intel-2016a
3.13.0 foss-2016b
3.13.0 intel-2016a
3.20.1 foss-2017b
3.20.1 GCCcore-6.4.0
3.20.1 intel-2016a
3.21.0 GCCcore-6.4.0
3.24.0 GCCcore-7.3.0 (Current Default Version)
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STAR
Version Toolchain / Variant
2.5.1b intel-2016a
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SUPERFLIP
Version Toolchain / Variant
20140213T0848  
Back to the list

SWIG
Version Toolchain / Variant
3.0.8 intel-2016a-Python-2.7.11
3.0.10 intel-2016a-Python-2.7.12
3.0.12 foss-2017b-Python-2.7.14
3.0.12 foss-2018b-Python-2.7.15
3.0.12 foss-2018b-Python-3.6.6 (Current Default Version)
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SageMath
Version Toolchain / Variant
8.1 gompi-2017b
Back to the list

ScaLAPACK
Version Toolchain / Variant
2.0.2 gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2
2.0.2 gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0
2.0.2 gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
2.0.2 gompi-2017b-OpenBLAS-0.2.20
2.0.2 gompi-2018a-OpenBLAS-0.2.20
2.0.2 gompi-2018b-OpenBLAS-0.3.1
2.0.2 gompic-2018a-OpenBLAS-0.2.20
2.0.2 gompic-2019a-OpenBLAS-0.3.5 (Current Default Version)
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Schrodinger
Version Toolchain / Variant
2017 1
2019 1 (Current Default Version)
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ScienceTools
Version Toolchain / Variant
v10r0p5  
Back to the list

ScientificPython
Version Toolchain / Variant
2.9.4 foss-2016b-Python-2.7.12
2.9.4 intel-2016a-Python-2.7.11 (Current Default Version)
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SeismicUnix
Version Toolchain / Variant
44R5 intel-2016a
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Serf
Version Toolchain / Variant
1.3.9 GCCcore-7.3.0
Back to the list

Spark
Version Toolchain / Variant
2.0.0  
2.2.0 Hadoop-2.6-Java-1.7.0_80
2.2.0 Hadoop-2.6-Java-1.8.0_152 (Current Default Version)
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Stacks
Version Toolchain / Variant
1.41 intel-2016a
2.3e foss-2018a (Current Default Version)
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Stampy
Version Toolchain / Variant
1.0.29 intel-2016a-Python-2.7.10
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Subversion
Version Toolchain / Variant
1.9.9 GCCcore-7.3.0
Back to the list

SuiteSparse
Version Toolchain / Variant
4.4.6 intel-2015b-ParMETIS-4.0.3
4.5.3 foss-2016b-ParMETIS-4.0.3
5.1.2 foss-2018b-METIS-5.1.0 (Current Default Version)
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SuperLU
Version Toolchain / Variant
5.2.1 intel-2016a-shared
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Szip
Version Toolchain / Variant
2.1 foss-2016b
2.1 GCC-4.9.3-2.25
2.1 GCCcore-5.4.0
2.1 goolf-1.4.10
2.1 intel-2015b
2.1 intel-2016a
2.1 iompi-2015.03
2.1.1 foss-2017b
2.1.1 GCCcore-6.4.0
2.1.1 GCCcore-7.3.0
2.1.1 iomkl-2018a (Current Default Version)
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TauDEM
Version Toolchain / Variant
5.3.8 foss-2017b
Back to the list

Tcl
Version Toolchain / Variant
8.5.12 intel-2016a
8.6.3 intel-2016a
8.6.4 foss-2016a
8.6.4 GCC-4.9.3-2.25
8.6.4 intel-2015b
8.6.4 intel-2016a
8.6.5 foss-2016b
8.6.5 intel-2016a
8.6.7 GCCcore-6.4.0
8.6.7 intel-2016a
8.6.8 foss-2017b
8.6.8 GCCcore-6.4.0
8.6.8 GCCcore-7.3.0 (Current Default Version)
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TensorFlow
Version Toolchain / Variant
0.11.0 rc2-intel-2016a-Python-2.7.11
1.0.0 intel-2016a-Python-2.7.11 (Current Default Version)
1.0.1 intel-2016a-GPU-Python-2.7.12
1.1.0 intel-2016a-Python-2.7.12
1.8.0 foss-2018a-GPU-Python-3.6.4
1.8.0 foss-2018a-Python-3.6.4
1.8.0 intel-2018a-skylake-Python-3.6.4
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Theano
Version Toolchain / Variant
0.6.0 goolf-1.4.10-Python-2.7.3
1.0.2 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

Tk
Version Toolchain / Variant
8.6.3 intel-2016a-no-X11
8.6.4 foss-2016a-no-X11
8.6.4 GCC-4.9.3-2.25-no-X11
8.6.4 GCC-4.9.3-2.25
8.6.4 intel-2015b-no-X11
8.6.4 intel-2016a-no-X11
8.6.5 foss-2016b
8.6.5 intel-2016a
8.6.8 foss-2017b
8.6.8 foss-2018a
8.6.8 GCCcore-7.3.0 (Current Default Version)
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Tkinter
Version Toolchain / Variant
2.7.15 foss-2018b-Python-2.7.15
3.6.4 foss-2018a-Python-3.6.4
3.6.6 foss-2018b-Python-3.6.6 (Current Default Version)
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TopHat
Version Toolchain / Variant
2.1.0 intel-2016a
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Triangle
Version Toolchain / Variant
1.6 gcc-4.8.5
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Trim_Galore
Version Toolchain / Variant
0.3.7 intel-2016a
0.4.1 intel-2016a (Current Default Version)
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Trimmomatic
Version Toolchain / Variant
0.32 Java-1.7.0_80
0.35 Java-1.7.0_80
0.38 Java-1.8.0_191 (Current Default Version)
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Trinity
Version Toolchain / Variant
2.2.0 foss-2016a
2.8.4 foss-2017b
2.8.4 foss-2018b (Current Default Version)
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UDUNITS
Version Toolchain / Variant
2.1.24 goolf-1.4.10
2.2.19 intel-2015b
2.2.19 intel-2016a
2.2.25 foss-2017b
2.2.26 foss-2018b
2.2.26 intel-2018a (Current Default Version)
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VCFtools
Version Toolchain / Variant
0.1.14 intel-2016a
0.1.16 foss-2017b-Perl-5.26.1 (Current Default Version)
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VMD
Version Toolchain / Variant
1.9.3 foss-2017b-Python-2.7.14
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VTK
Version Toolchain / Variant
7.0.0 intel-2016a-Python-2.7.10
8.0.1 intel-2016a-Python-2.7.12 (Current Default Version)
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Velvet
Version Toolchain / Variant
1.2.07 goolf-1.4.10
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Vim
Version Toolchain / Variant
8.0 foss-2016a-Python-2.7.11
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VirtualGL
Version Toolchain / Variant
2.6.1 intel-2016a
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WPS
Version Toolchain / Variant
3.7 intel-2016a-dmpar
3.8 intel-2016a-dmpar (Current Default Version)
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WRF
Version Toolchain / Variant
3.6.1 intel-2016a-dmpar
3.7 intel-2016a-dmpar
3.7 iompi-2015.03-dmpar
3.7.1 intel-2016a-dmpar-chem
3.7.1 intel-2016a-dmpar (Current Default Version)
3.8.0 intel-2016a-dmpar
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X11
Version Toolchain / Variant
20160819 foss-2016b
20160819 intel-2016a
20171023 GCCcore-6.4.0
20180131 foss-2017b
20180131 GCCcore-6.4.0
20180604 GCCcore-7.3.0 (Current Default Version)
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XML-LibXML
Version Toolchain / Variant
2.0132 GCCcore-7.3.0-Perl-5.28.0
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XML-Parser
Version Toolchain / Variant
2.44_01 foss-2017b-Perl-5.26.0
2.44_01 GCCcore-6.4.0-Perl-5.26.0
2.44_01 GCCcore-6.4.0-Perl-5.26.1
2.44_01 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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XZ
Version Toolchain / Variant
5.2.2 foss-2016b
5.2.2 GCCcore-4.9.3
5.2.2 intel-2016a
5.2.3 foss-2017b
5.2.3 GCCcore-6.4.0
5.2.3 intel-2016a
5.2.4 GCCcore-7.3.0
5.2.4 GCCcore-8.2.0
5.2.4 intel-2016a (Current Default Version)
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YAXT
Version Toolchain / Variant
0.4.4 intel-2016a
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Yasm
Version Toolchain / Variant
1.3.0 GCC-4.9.3-2.25
1.3.0 GCCcore-6.4.0
1.3.0 intel-2016a (Current Default Version)
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ZeroMQ
Version Toolchain / Variant
3.2.2 goolf-1.4.10
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aTRAM
Version Toolchain / Variant
2.2 foss-2018b
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ant
Version Toolchain / Variant
1.9.6 Java-1.8.0_91
1.9.7 Java-1.8.0_92
1.10.1 Java-1.8.0_191 (Current Default Version)
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basemap
Version Toolchain / Variant
1.0.7 intel-2016a-Python-2.7.11
1.0.7 intel-2016a-Python-2.7.12
1.2.0 foss-2018b-Python-3.6.6 (Current Default Version)
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bcl2fastq2
Version Toolchain / Variant
2.20.0 foss-2018b
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beagle-lib
Version Toolchain / Variant
3.0.2 foss-2017b
3.0.2 foss-2018a (Current Default Version)
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binutils
Version Toolchain / Variant
2.25 GCC-4.9.3-binutils-2.25
2.25 GCCcore-4.9.3
2.25  
2.26 GCCcore-5.4.0
2.26  
2.28 foss-2016b
2.28 foss-2017b
2.28 GCCcore-6.4.0
2.28  
2.29 GCCcore-7.2.0
2.29 intel-2016a
2.29  
2.30 foss-2018a
2.30 GCCcore-7.3.0
2.30 intel-2016a
2.30  
2.31.1 GCCcore-8.2.0
2.31.1 (Current Default Version)
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biodeps
Version Toolchain / Variant
1.6 goolf-1.4.10
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btrim64
Version Toolchain / Variant
0.3.0  
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bzip2
Version Toolchain / Variant
1.0.6 foss-2016a
1.0.6 foss-2016b
1.0.6 foss-2017b
1.0.6 GCC-4.9.3-2.25
1.0.6 GCCcore-6.4.0
1.0.6 GCCcore-7.3.0
1.0.6 GCCcore-8.2.0
1.0.6 goolf-1.4.10
1.0.6 intel-2015b
1.0.6 intel-2016a (Current Default Version)
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cURL
Version Toolchain / Variant
7.43.0 intel-2015b
7.43.0 intel-2016a
7.45.0 intel-2015b
7.47.0 foss-2016a
7.47.0 intel-2016a
7.47.0 iompi-2015.03
7.49.1 foss-2016b
7.49.1 intel-2016a (Current Default Version)
7.55.1 GCCcore-6.4.0
7.56.0 GCCcore-6.4.0
7.58.0 foss-2017b
7.58.0 GCCcore-6.4.0
7.58.0 iomkl-2018a
7.60.0 GCCcore-7.3.0
7.60.0 intel-2016a
7.63.0 GCCcore-8.2.0
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cafe
Version Toolchain / Variant
3.1 intel-2016a
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cairo
Version Toolchain / Variant
1.14.2 intel-2016a
1.14.6 foss-2016b
1.14.6 GCC-4.9.3-2.25-GLib-2.48.0
1.14.6 intel-2016a-GLib-2.48.0
1.14.8 foss-2017b
1.14.12 GCCcore-6.4.0
1.14.12 GCCcore-7.3.0 (Current Default Version)
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canu
Version Toolchain / Variant
1.8 foss-2017b-Perl-5.26.0
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ccp4
Version Toolchain / Variant
7.0.075  
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cftime
Version Toolchain / Variant
1.0.0b1 foss-2016b-Python-2.7.12
1.0.1 foss-2018b-Python-2.7.15 (Current Default Version)
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cuDNN
Version Toolchain / Variant
5.0 CUDA-7.5.18
5.0 CUDA-8.0
5.1 CUDA-8.0
5.1 intel-2016a-CUDA-8.0.44
7.5.0.56 CUDA-9.2.88 (Current Default Version)
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cutadapt
Version Toolchain / Variant
1.5 intel-2016a-Python-2.7.10
1.11 intel-2016a-Python-2.7.10 (Current Default Version)
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damageproto
Version Toolchain / Variant
1.2.1 GCC-4.9.3-2.25
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dill
Version Toolchain / Variant
0.2.9 foss-2016b
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dri2proto
Version Toolchain / Variant
2.8 GCC-4.9.3-2.25
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dri3proto
Version Toolchain / Variant
1.0 GCC-4.9.3-2.25
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ecCodes
Version Toolchain / Variant
2.8.2 foss-2017b
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eccodes
Version Toolchain / Variant
2.1.0 foss-2016a
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eudev
Version Toolchain / Variant
3.1.5 GCC-4.9.3-2.25
3.1.5 intel-2016a (Current Default Version)
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expat
Version Toolchain / Variant
2.1.0 foss-2016a
2.1.0 goolf-1.4.10
2.1.0 intel-2015b
2.1.0 intel-2016a
2.1.1 GCC-4.9.3-2.25
2.1.1 intel-2016a
2.2.0 foss-2016b
2.2.0 intel-2016a
2.2.4 GCCcore-6.4.0
2.2.5 foss-2017b
2.2.5 GCCcore-6.4.0
2.2.5 GCCcore-7.3.0 (Current Default Version)
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file
Version Toolchain / Variant
5.33 GCCcore-6.4.0
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fixesproto
Version Toolchain / Variant
5.0 GCC-4.9.3-2.25
5.0 intel-2016a (Current Default Version)
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flex
Version Toolchain / Variant
2.5.37 goolf-1.4.10
2.5.39 GCC-4.9.3-binutils-2.25
2.5.39 GCCcore-4.9.3
2.5.39 intel-2015b
2.5.39 intel-2016a
2.5.39  
2.6.0 foss-2016b
2.6.0 GCC-4.9.3-2.25
2.6.0 GCCcore-5.4.0
2.6.0 intel-2016a
2.6.0 iompi-2015.03
2.6.0  
2.6.3  
2.6.4 foss-2016b
2.6.4 foss-2017b
2.6.4 GCCcore-6.4.0
2.6.4 GCCcore-7.2.0
2.6.4 GCCcore-7.3.0
2.6.4 GCCcore-8.2.0
2.6.4 intel-2016a
2.6.4 intel-2018a
2.6.4 (Current Default Version)
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flowPsi
Version Toolchain / Variant
rel 1-0-beta-3-intel-2016a
rel 1-beta-6-intel-2016a (Current Default Version)
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fontconfig
Version Toolchain / Variant
2.11.94 intel-2016a
2.11.95 GCC-4.9.3-2.25
2.11.95 intel-2016a
2.12.1 foss-2016b
2.12.1 foss-2017b
2.12.1 intel-2016a
2.12.4 GCCcore-6.4.0
2.12.6 GCCcore-6.4.0
2.13.0 GCCcore-7.3.0 (Current Default Version)
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fontsproto
Version Toolchain / Variant
2.1.3 GCC-4.9.3-2.25
2.1.3 intel-2016a (Current Default Version)
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foss
Version Toolchain / Variant
2016a  
2016b  
2017b  
2018a  
2018b (Current Default Version)
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fosscuda
Version Toolchain / Variant
2019a  
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freeglut
Version Toolchain / Variant
3.0.0 GCC-4.9.3-2.25
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freetype
Version Toolchain / Variant
2.4.10 goolf-1.4.10
2.6 intel-2016a
2.6.1 intel-2016a
2.6.2 GCC-4.9.3-2.25
2.6.2 intel-2016a
2.6.3 GCC-4.9.3-2.25
2.6.3 intel-2016a
2.6.5 foss-2016b
2.6.5 intel-2016a
2.7 foss-2016b
2.7 intel-2016a
2.7.1 foss-2017b-libpng-1.6.29
2.7.1 foss-2017b
2.8 GCCcore-6.4.0
2.9 GCCcore-6.4.0
2.9.1 GCCcore-7.3.0 (Current Default Version)
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g2lib
Version Toolchain / Variant
3.1.0 intel-2018a
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gcccuda
Version Toolchain / Variant
2.6.10  
2018a  
2019a (Current Default Version)
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gettext
Version Toolchain / Variant
0.19.2 intel-2016a
0.19.6 foss-2016b
0.19.7 foss-2016a
0.19.7 GCC-4.9.3-2.25
0.19.7 intel-2016a
0.19.8 foss-2016b
0.19.8 intel-2016a
0.19.8  
0.19.8.1 foss-2017b-libxml2-2.9.7
0.19.8.1 GCCcore-6.4.0-libxml2-2.9.7
0.19.8.1 GCCcore-6.4.0
0.19.8.1 GCCcore-7.3.0
0.19.8.1 (Current Default Version)
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gflags
Version Toolchain / Variant
2.1.2 GCC-4.9.3-2.25
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git
Version Toolchain / Variant
2.8.0 foss-2016a
2.18.0 GCCcore-7.3.0 (Current Default Version)
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glog
Version Toolchain / Variant
0.3.4 GCC-4.9.3-2.25
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glproto
Version Toolchain / Variant
1.4.17 GCC-4.9.3-2.25
1.4.17 intel-2016a (Current Default Version)
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gnuplot
Version Toolchain / Variant
5.2.2 foss-2017b
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gompi
Version Toolchain / Variant
1.1.0 no-OFED
1.4.10  
1.5.12  
1.5.14  
2016a  
2016b  
2017b  
2018a  
2018b (Current Default Version)
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gompic
Version Toolchain / Variant
2018a  
2019a (Current Default Version)
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goolf
Version Toolchain / Variant
1.4.10  
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goolfc
Version Toolchain / Variant
2018a  
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gperf
Version Toolchain / Variant
3.0.4 GCC-4.9.3-2.25
3.0.4 intel-2016a
3.1 foss-2017b
3.1 GCCcore-6.4.0
3.1 GCCcore-7.3.0 (Current Default Version)
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grib_api
Version Toolchain / Variant
1.17.0 intel-2016a
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gzip
Version Toolchain / Variant
1.5 goolf-1.4.10
1.6 foss-2016b
1.6 intel-2016a (Current Default Version)
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h5py
Version Toolchain / Variant
2.5.0 intel-2016a-Python-2.7.10-HDF5-1.8.16
2.6.0 intel-2016a-Python-2.7.12
2.7.0 intel-2016a-Python-2.7.12
2.7.1 foss-2018a-Python-3.6.4 (Current Default Version)
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help2man
Version Toolchain / Variant
1.47.4 foss-2017b
1.47.4 GCCcore-5.4.0
1.47.4 GCCcore-6.4.0
1.47.4 GCCcore-7.2.0
1.47.4 GCCcore-7.3.0
1.47.4 intel-2016a
1.47.4  
1.47.7 GCCcore-8.2.0
1.47.10 intel-2018a (Current Default Version)
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hwloc
Version Toolchain / Variant
1.6.2 GCC-4.7.2
1.8.1 GCC-4.8.2
1.11.0 GNU-4.9.3-2.25
1.11.1 iccifort-2015.3.187-GNU-4.9.3-2.25
1.11.2 GCC-4.9.3-2.25
1.11.3 GCC-5.4.0-2.26
1.11.3 iccifort-2016.3.210-GCC-5.4.0-2.26
1.11.5 GCC-6.4.0-2.28
1.11.5 intel-2016a
1.11.7 GCCcore-6.4.0
1.11.8 GCCcore-6.4.0
1.11.8 iccifort-2018.1.163-GCC-6.4.0-2.28
1.11.10 GCCcore-7.3.0
1.11.11 GCCcore-8.2.0 (Current Default Version)
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icc
Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2015.3.187  
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
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iccifort
Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2015.3.187  
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
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ictce
Version Toolchain / Variant
7.3.5  
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ifort
Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
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iimpi
Version Toolchain / Variant
7.3.5 GNU-4.9.3-2.25
7.3.5  
8.1.5 GCC-4.9.3-2.25 (Current Default Version)
2018a  
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imkl
Version Toolchain / Variant
11.2.3.187 iimpi-7.3.5-GNU-4.9.3-2.25
11.2.3.187 iimpi-7.3.5
11.2.3.187 iompi-2015.03
11.3.1.150 iimpi-8.1.5-GCC-4.9.3-2.25 (Current Default Version)
2018.1.163 iimpi-2018a
2018.1.163 iompi-2018a
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impi
Version Toolchain / Variant
5.0.3.048 iccifort-2015.3.187-GNU-4.9.3-2.25
5.0.3.048 iccifort-2015.3.187
5.1.2.150 iccifort-2016.1.150-GCC-4.9.3-2.25 (Current Default Version)
2018.1.163 iccifort-2018.1.163-GCC-6.4.0-2.28
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inputproto
Version Toolchain / Variant
2.3.1 foss-2016b
2.3.1 GCC-4.9.3-2.25
2.3.1 intel-2016a (Current Default Version)
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intel
Version Toolchain / Variant
2015b  
2016a (Current Default Version)
2018a  
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intltool
Version Toolchain / Variant
0.51.0 foss-2017b-Perl-5.26.0
0.51.0 GCCcore-6.4.0-Perl-5.26.0
0.51.0 GCCcore-6.4.0-Perl-5.26.1
0.51.0 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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iomkl
Version Toolchain / Variant
2018a  
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iompi
Version Toolchain / Variant
2015.03  
2016.07 (Current Default Version)
2018a  
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jenkins
Version Toolchain / Variant
2.164.1 Java-1.8.0_191
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kbproto
Version Toolchain / Variant
1.0.7 foss-2016b
1.0.7 GCC-4.9.3-2.25
1.0.7 intel-2016a (Current Default Version)
Back to the list

libGLU
Version Toolchain / Variant
9.0.0 foss-2016b
9.0.0 foss-2017b
9.0.0 foss-2018a
9.0.0 foss-2018b
9.0.0 intel-2016a-Mesa-11.2.1
9.0.0 intel-2016a (Current Default Version)
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libICE
Version Toolchain / Variant
1.0.9 foss-2016b
1.0.9 intel-2016a (Current Default Version)
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libSM
Version Toolchain / Variant
1.2.2 foss-2016b
1.2.2 intel-2016a (Current Default Version)
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libX11
Version Toolchain / Variant
1.6.3 foss-2016b
1.6.3 GCC-4.9.3-2.25
1.6.3 intel-2016a (Current Default Version)
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libXau
Version Toolchain / Variant
1.0.8 foss-2016b
1.0.8 GCC-4.9.3-2.25
1.0.8 intel-2016a (Current Default Version)
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libXaw
Version Toolchain / Variant
1.0.12 foss-2016b
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libXcursor
Version Toolchain / Variant
1.1.14 intel-2016a
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libXdamage
Version Toolchain / Variant
1.1.4 GCC-4.9.3-2.25
1.1.4 intel-2016a (Current Default Version)
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libXdmcp
Version Toolchain / Variant
1.1.2 foss-2016b
1.1.2 GCC-4.9.3-2.25
1.1.2 intel-2016a (Current Default Version)
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libXext
Version Toolchain / Variant
1.3.3 GCC-4.9.3-2.25
1.3.3 intel-2016a (Current Default Version)
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libXfixes
Version Toolchain / Variant
5.0.1 GCC-4.9.3-2.25
5.0.1 intel-2016a (Current Default Version)
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libXfont
Version Toolchain / Variant
1.5.1 GCC-4.9.3-2.25
1.5.1 intel-2016a-freetype-2.6.3 (Current Default Version)
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libXft
Version Toolchain / Variant
2.3.2 intel-2016a
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libXi
Version Toolchain / Variant
1.7.6 GCC-4.9.3-2.25
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libXinerama
Version Toolchain / Variant
1.1.3 intel-2016a
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libXmu
Version Toolchain / Variant
1.1.2 foss-2016b
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libXpm
Version Toolchain / Variant
3.5.11 foss-2016b
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libXrandr
Version Toolchain / Variant
1.5.0 GCC-4.9.3-2.25
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libXrender
Version Toolchain / Variant
0.9.9 GCC-4.9.3-2.25
0.9.9 intel-2016a (Current Default Version)
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libXt
Version Toolchain / Variant
1.1.5 foss-2016b
1.1.5 intel-2016a (Current Default Version)
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libcerf
Version Toolchain / Variant
1.5 GCCcore-6.4.0
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libdap
Version Toolchain / Variant
3.14.0 intel-2015b-Python-2.7.10
3.19.1 intel-2018a (Current Default Version)
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libdrm
Version Toolchain / Variant
2.4.67 GCC-4.9.3-2.25
2.4.68 intel-2016a
2.4.70 foss-2016b
2.4.70 intel-2016a
2.4.88 foss-2017b
2.4.88 GCCcore-6.4.0
2.4.91 GCCcore-6.4.0
2.4.92 GCCcore-7.3.0 (Current Default Version)
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libffi
Version Toolchain / Variant
3.1 intel-2016a (Current Default Version)
3.2.1 foss-2016b
3.2.1 foss-2017b
3.2.1 GCC-4.9.3-2.25
3.2.1 GCCcore-6.4.0
3.2.1 GCCcore-7.3.0
3.2.1 intel-2016a
3.2.1 intel-2018a
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libfontenc
Version Toolchain / Variant
1.1.3 GCC-4.9.3-2.25
1.1.3 intel-2016a (Current Default Version)
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libgd
Version Toolchain / Variant
2.2.3 foss-2016b
2.2.4 GCCcore-6.4.0
2.2.5 GCCcore-7.3.0 (Current Default Version)
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libgeotiff
Version Toolchain / Variant
1.4.2 foss-2018b
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libgtextutils
Version Toolchain / Variant
0.6.1 goolf-1.4.10
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libharu
Version Toolchain / Variant
2.3.0 foss-2018b
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libjpeg-turbo
Version Toolchain / Variant
1.3.1 intel-2016a
1.4.2 GCC-4.9.3-2.25-NASM-2.12.01
1.4.2 intel-2016a-NASM-2.12.01
1.4.2 intel-2016a
1.5.0 foss-2016b
1.5.0 intel-2016a (Current Default Version)
1.5.2 foss-2017b
1.5.2 GCCcore-6.4.0
1.5.3 foss-2017b
1.5.3 GCCcore-6.4.0
2.0.0 GCCcore-7.3.0
Back to the list

libmatheval
Version Toolchain / Variant
1.1.11 intel-2018a
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libpciaccess
Version Toolchain / Variant
0.13.4 GCC-4.9.3-2.25
0.13.4 intel-2016a
0.14 GCCcore-7.3.0
0.14 GCCcore-8.2.0 (Current Default Version)
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libpng
Version Toolchain / Variant
1.5.13 goolf-1.4.10
1.6.2 goolf-1.4.10
1.6.6 goolf-1.4.10
1.6.17 intel-2016a
1.6.18 intel-2016a
1.6.21 GCC-4.9.3-2.25
1.6.21 intel-2016a
1.6.23 foss-2016b
1.6.23 intel-2016a
1.6.24 foss-2016b
1.6.24 intel-2016a
1.6.26 foss-2016b
1.6.26 intel-2016a
1.6.29 foss-2017b
1.6.32 GCCcore-6.4.0
1.6.34 GCCcore-6.4.0
1.6.34 GCCcore-7.3.0 (Current Default Version)
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libpthread-stubs
Version Toolchain / Variant
0.3 foss-2016b
0.3 GCC-4.9.3-2.25
0.3 intel-2016a (Current Default Version)
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libreadline
Version Toolchain / Variant
6.2 goolf-1.4.10
6.3 foss-2016a
6.3 foss-2016b
6.3 foss-2018a
6.3 GCC-4.9.3-2.25
6.3 GCCcore-4.9.3
6.3 intel-2015b
6.3 intel-2016a
6.3 intel-2018a
7.0 foss-2017b
7.0 GCCcore-6.4.0
7.0 GCCcore-7.3.0
7.0 intel-2016a (Current Default Version)
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libsbml
Version Toolchain / Variant
5.15.0 intel-2016a-Python-2.7.11
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libsndfile
Version Toolchain / Variant
1.0.28 GCCcore-7.3.0
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libtool
Version Toolchain / Variant
2.4.2 goolf-1.4.10
2.4.6 foss-2016a
2.4.6 foss-2016b
2.4.6 foss-2017b
2.4.6 GCC-4.9.2
2.4.6 GCC-4.9.3-2.25
2.4.6 GCCcore-4.9.3
2.4.6 GCCcore-6.4.0
2.4.6 GCCcore-7.3.0
2.4.6 GCCcore-8.2.0
2.4.6 GNU-4.9.3-2.25
2.4.6 intel-2016a (Current Default Version)
2.4.6 intel-2018a
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libunistring
Version Toolchain / Variant
0.9.6 intel-2018a
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libunwind
Version Toolchain / Variant
1.2.1 GCCcore-7.3.0
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libxc
Version Toolchain / Variant
4.2.3 intel-2018a
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libxcb
Version Toolchain / Variant
1.11.1 foss-2016b
1.11.1 GCC-4.9.3-2.25
1.11.1 intel-2016a (Current Default Version)
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libxml2
Version Toolchain / Variant
2.9.2 intel-2016a
2.9.3 foss-2016a
2.9.3 GCC-4.9.3-2.25
2.9.3 intel-2015b-Python-2.7.10
2.9.3 intel-2016a
2.9.4 foss-2016b-Python-2.7.12
2.9.4 foss-2016b
2.9.4 GCCcore-4.9.3
2.9.4 GCCcore-6.4.0
2.9.4 intel-2016a-Python-2.7.12
2.9.4 intel-2016a
2.9.7 foss-2017b
2.9.7 GCCcore-6.4.0
2.9.8 GCCcore-7.3.0
2.9.8 GCCcore-8.2.0 (Current Default Version)
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libxsmm
Version Toolchain / Variant
1.8.3 intel-2018a
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libyaml
Version Toolchain / Variant
0.1.7 GCCcore-6.4.0
0.1.7 (Current Default Version)
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lpsolve
Version Toolchain / Variant
5.5.2.5 foss-2018b
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makedepend
Version Toolchain / Variant
1.0.5 GCC-4.9.3-2.25
1.0.5 intel-2016a (Current Default Version)
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matplotlib
Version Toolchain / Variant
1.1.1 goolf-1.4.10-Python-2.7.3
1.5.0 intel-2016a-Python-2.7.10
1.5.0 intel-2016a-Python-2.7.11
1.5.1 intel-2016a-Python-2.7.11
1.5.1 intel-2016a-Python-2.7.12
1.5.1 intel-2016a-Python-3.6.3
1.5.3 intel-2016a-Python-3.5.1
2.0.0 foss-2016b-Python-2.7.12
2.1.2 foss-2018a-Python-3.6.4
2.2.3 foss-2018b-Python-2.7.15
3.0.0 foss-2018b-Python-3.6.6 (Current Default Version)
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minimap2
Version Toolchain / Variant
2.13 foss-2017b
Back to the list

mkl-dnn
Version Toolchain / Variant
0.16 intel-2016a
Back to the list

molecularGSM
Version Toolchain / Variant
0.0.1 intel-2016a
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mpi4py
Version Toolchain / Variant
1.3.1 intel-2015b-Python-2.7.10-timed-pingpong
1.3.1 intel-2015b-Python-2.7.10 (Current Default Version)
1.3.1 intel-2016a-Python-2.7.10
3.0.0 intel-2016a-Python-3.6.3
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mpiBLAST
Version Toolchain / Variant
1.6.0 goolf-1.4.10
Back to the list

mpmath
Version Toolchain / Variant
0.19 foss-2016b-Python-2.7.12
Back to the list

myHadoop
Version Toolchain / Variant
1.26.18  
Back to the list

ncbi-vdb
Version Toolchain / Variant
2.9.1 1-foss-2017b
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ncurses
Version Toolchain / Variant
5.9 GCC-4.9.3-2.25
5.9 GNU-4.9.3-2.25
5.9 goolf-1.4.10
5.9 intel-2015b
5.9 intel-2016a
5.9 iompi-2015.03
6.0 foss-2016a
6.0 foss-2016b
6.0 foss-2017b
6.0 GCC-4.9.3-2.25
6.0 GCCcore-4.9.3
6.0 GCCcore-6.4.0
6.0 intel-2016a
6.0 iompi-2015.03
6.0 (Current Default Version)
6.1 GCCcore-6.4.0
6.1 GCCcore-7.3.0
6.1 GCCcore-8.2.0
6.1 intel-2016a
6.1 intel-2018a
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ncview
Version Toolchain / Variant
2.1.2 goolf-1.4.10
Back to the list

netCDF
Version Toolchain / Variant
4.2.1.1 goolf-1.4.10
4.3.2 intel-2015b
4.3.2 intel-2016a
4.3.3.1 intel-2015b
4.3.3.1 intel-2016a
4.4.0 intel-2016a
4.4.0 iompi-2015.03
4.4.1 foss-2016b
4.4.1 intel-2016a
4.4.1 iompi-2015.03 (Current Default Version)
4.4.1.1 intel-2018a-HDF5-1.8.19
4.5.0 foss-2017b
4.5.0 iomkl-2018a
4.6.0 foss-2017b-disabled
4.6.0 foss-2017b
4.6.1 foss-2018b
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netCDF-C++4
Version Toolchain / Variant
4.3.0 foss-2018b
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netCDF-Fortran
Version Toolchain / Variant
4.2 goolf-1.4.10
4.4.2 intel-2015b
4.4.3 intel-2016a
4.4.4 foss-2018b
4.4.4 intel-2016a
4.4.4 iomkl-2018a
4.4.4 iompi-2015.03 (Current Default Version)
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netcdf4-python
Version Toolchain / Variant
1.1.8 intel-2015b-Python-2.7.10
1.2.4 intel-2016a-Python-3.5.1
1.4.0 foss-2016b-Python-2.7.12
1.4.3 foss-2018b-Python-2.7.15 (Current Default Version)
Back to the list

nettle
Version Toolchain / Variant
3.2 foss-2016b
3.2 intel-2016a
3.3 foss-2017b
3.3 GCCcore-6.4.0
3.4 foss-2018a
3.4 foss-2018b (Current Default Version)
Back to the list

numactl
Version Toolchain / Variant
2.0.10 GNU-4.9.3-2.25
2.0.10 iccifort-2015.3.187-GNU-4.9.3-2.25
2.0.11 GCC-4.9.3-2.25
2.0.11 GCC-5.4.0-2.26
2.0.11 GCCcore-6.4.0
2.0.11 GCCcore-7.3.0
2.0.11 iccifort-2016.3.210-GCC-5.4.0-2.26
2.0.11 iccifort-2018.1.163-GCC-6.4.0-2.28
2.0.11 intel-2016a (Current Default Version)
2.0.12 GCCcore-8.2.0
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numpy
Version Toolchain / Variant
1.6.2 goolf-1.4.10-Python-2.7.3
1.7.1 goolf-1.4.10-Python-2.7.3
1.8.2 intel-2016a-Python-2.7.11
1.10.4 intel-2015b-Python-2.7.10
1.10.4 intel-2016a-Python-2.7.10
1.10.4 intel-2016a-Python-2.7.11
1.10.4 intel-2016a-Python-3.5.1
1.11.0 intel-2016a-Python-2.7.12
1.11.2 foss-2016b-Python-2.7.12
1.11.2 intel-2016a-Python-3.5.1
1.13.1 foss-2018b-Python-2.7.15
1.13.1 intel-2016a-Python-2.7.11
1.13.1 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

p3dfft
Version Toolchain / Variant
2.7.5 intel-2016a
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packmol
Version Toolchain / Variant
16.161 intel-2016a
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pandas
Version Toolchain / Variant
0.11.0 goolf-1.4.10-Python-2.7.3
0.18.1 intel-2016a-Python-2.7.12
0.21.0 foss-2018a-Python-3.6.4 (Current Default Version)
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parallel
Version Toolchain / Variant
20190222 GCCcore-7.3.0
Back to the list

parallel-netcdf
Version Toolchain / Variant
1.8.1 intel-2016a
Back to the list

picard
Version Toolchain / Variant
2.5.0 Java-1.8.0_91
2.18.27 Java-1.8.0_191 (Current Default Version)
Back to the list

pip
Version Toolchain / Variant
8.1.2 GCC-4.9.3-2.25-Python-2.7.10
8.1.2 intel-2016a-Python-2.7.10
8.1.2 intel-2016a-Python-2.7.11
9.0.1 intel-2016a-Python-2.7.10
9.0.1 intel-2016a-Python-2.7.11
9.0.1 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

pixman
Version Toolchain / Variant
0.32.6 intel-2016a
0.34.0 foss-2016b
0.34.0 foss-2017b
0.34.0 GCC-4.9.3-2.25
0.34.0 GCCcore-6.4.0
0.34.0 GCCcore-7.3.0
0.34.0 intel-2016a (Current Default Version)
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pkg-config
Version Toolchain / Variant
0.29 foss-2016b
0.29 GCC-4.9.3-2.25
0.29 intel-2016a
0.29.1 foss-2016b
0.29.1 intel-2016a
0.29.1 intel-2018a
0.29.2 foss-2017b
0.29.2 GCCcore-6.4.0
0.29.2 GCCcore-7.3.0
0.29.2 intel-2016a (Current Default Version)
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pkgconfig
Version Toolchain / Variant
1.1.0 intel-2016a-Python-2.7.10
1.2.2 intel-2016a-Python-2.7.12
1.3.1 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

popt
Version Toolchain / Variant
1.16 foss-2016b
Back to the list

pplacer
Version Toolchain / Variant
1.1.alpha19  
Back to the list

prodigal
Version Toolchain / Variant
2.6.3 GCCcore-7.3.0
Back to the list

prokka
Version Toolchain / Variant
1.11 foss-2016b-BioPerl-1.7.0
Back to the list

protobuf
Version Toolchain / Variant
2.5.0  
3.1.0 GCC-4.9.3-2.25
3.1.0 intel-2016a
3.1.0 Python-2.7.10
3.2.0 intel-2016a (Current Default Version)
Back to the list

protobuf-python
Version Toolchain / Variant
3.1.0 intel-2016a-Python-2.7.11
3.2.0 intel-2016a-Python-2.7.12 (Current Default Version)
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pullseq
Version Toolchain / Variant
1.0.2 GCCcore-7.3.0
Back to the list

pygrib
Version Toolchain / Variant
2.0.2rel intel-2016a-Python-2.7.12
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pypar
Version Toolchain / Variant
2.0 foss-2016b
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rDock
Version Toolchain / Variant
2013.1 foss-2016b
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randrproto
Version Toolchain / Variant
1.5.0 GCC-4.9.3-2.25
Back to the list

regex
Version Toolchain / Variant
2016.08.27 intel-2016a-Python-2.7.10
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renderproto
Version Toolchain / Variant
0.11 GCC-4.9.3-2.25
0.11 intel-2016a (Current Default Version)
Back to the list

scikit-learn
Version Toolchain / Variant
0.17.1 intel-2016a-Python-2.7.10
0.17.1 intel-2016a-Python-2.7.12
0.19.1 foss-2018a-Python-3.6.4
0.19.1 intel-2016a-Python-2.7.12
0.20.2 foss-2018b-Python-2.7.15 (Current Default Version)
Back to the list

scipy
Version Toolchain / Variant
0.13.0 goolf-1.4.10-Python-2.7.3
0.16.1 intel-2015b-Python-2.7.10
0.17.0 foss-2016b-Python-2.7.12
0.17.0 foss-2018b-Python-2.7.15
0.17.0 intel-2016a-Python-2.7.12 (Current Default Version)
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shelx
Version Toolchain / Variant
20181226T1934  
Back to the list

snappy
Version Toolchain / Variant
1.1.3 GCC-4.9.3-2.25
Back to the list

spark-corenlp
Version Toolchain / Variant
0.3.1 s_2.11
Back to the list

spglib
Version Toolchain / Variant
1.9.9 intel-2016a
Back to the list

sympy
Version Toolchain / Variant
1.0 foss-2016b-Python-2.7.12
Back to the list

tabix
Version Toolchain / Variant
0.2.6 GCCcore-7.3.0
0.2.6 intel-2016a (Current Default Version)
Back to the list

tbb
Version Toolchain / Variant
2018_U5 GCCcore-6.4.0
2018_U5 GCCcore-7.3.0 (Current Default Version)
Back to the list

tcsh
Version Toolchain / Variant
6.19.00 intel-2016a
6.19.00 iompi-2015.03 (Current Default Version)
Back to the list

unixODBC
Version Toolchain / Variant
2.3.7 foss-2016b
2.3.7 intel-2016a
2.3.7 (Current Default Version)
Back to the list

util-linux
Version Toolchain / Variant
2.22.2 goolf-1.4.10
2.31 GCCcore-6.4.0
2.31.1 foss-2017b
2.31.1 GCCcore-6.4.0
2.32 GCCcore-7.3.0 (Current Default Version)
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vmd
Version Toolchain / Variant
1.9.2 intel-2016a
Back to the list

wheel
Version Toolchain / Variant
0.30.0 intel-2016a-Python-2.7.12
0.30.0 intel-2018a-Python-3.6.4
0.31.0 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

wtdbg2
Version Toolchain / Variant
2.3 foss-2018b
Back to the list

wxWidgets
Version Toolchain / Variant
3.0.3 foss-2017b
Back to the list

x264
Version Toolchain / Variant
20160430 GCC-4.9.3-2.25
20160430 intel-2016a
20180128 GCCcore-6.4.0 (Current Default Version)
Back to the list

x265
Version Toolchain / Variant
2.6 GCCcore-6.4.0
Back to the list

xcb-proto
Version Toolchain / Variant
1.11  
Back to the list

xextproto
Version Toolchain / Variant
7.3.0 foss-2016b
7.3.0 GCC-4.9.3-2.25
7.3.0 intel-2016a (Current Default Version)
Back to the list

xineramaproto
Version Toolchain / Variant
1.2.1 intel-2016a
Back to the list

xorg-macros
Version Toolchain / Variant
1.19.0 foss-2016b
1.19.0 GCC-4.9.3-2.25
1.19.0 intel-2016a
1.19.2 GCCcore-7.3.0
1.19.2 GCCcore-8.2.0 (Current Default Version)
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xprop
Version Toolchain / Variant
1.2.2 GCCcore-6.4.0
1.2.2 intel-2016a (Current Default Version)
Back to the list

xproto
Version Toolchain / Variant
7.0.28 foss-2016b
7.0.28 GCC-4.9.3-2.25
7.0.28 intel-2016a (Current Default Version)
   
Back to the list

xtrans
Version Toolchain / Variant
1.3.5 foss-2016b
1.3.5 GCC-4.9.3-2.25
1.3.5 intel-2016a (Current Default Version)
Back to the list

zlib
Version Toolchain / Variant
1.2.5 goolf-1.4.10
1.2.7 goolf-1.4.10
1.2.8 foss-2016a
1.2.8 foss-2016b
1.2.8 foss-2017b
1.2.8 GCC-4.9.3-binutils-2.25
1.2.8 GCC-4.9.3-2.25
1.2.8 GCCcore-4.9.3
1.2.8 GCCcore-5.4.0
1.2.8 goolf-1.4.10
1.2.8 intel-2015b
1.2.8 intel-2016a
1.2.8 iompi-2015.03
1.2.8  
1.2.11 foss-2017b
1.2.11 GCCcore-5.4.0
1.2.11 GCCcore-6.4.0
1.2.11 GCCcore-7.2.0
1.2.11 GCCcore-7.3.0
1.2.11 GCCcore-8.2.0
1.2.11 intel-2016a
1.2.11 intel-2018a
1.2.11 iomkl-2018a
1.2.11 (Current Default Version)
Back to the list

You may request new software deployments at any time, but we highly recommend sending your request as quickly as possible. For non-commercial users, OSCER can deploy software for you free of charge.

Requests must be sent to support@oscer.ou.edu with the following information:

  • Name of the software
  • The version of the software
  • URL to download the installer package, OR, copy of the installer package
    NOTE: Software must Linux compatible and capable of running in a multi-cluster environment
  • Any other information pertinent to successfully deploying the software (compiler information, etc.)

Every effort will be made to process requests as quickly as possible. Since each software deployment is different and poses its own challenges and complexities, we are unable to provide an estimate or guarantee a turnaround time. We strongly recomend sending us your request as soon as you anticipate a possible need (rather than waiting until you actually need to use it).

You may also deploy software in your home directory, but only to the limit of your quota (20 GB in most cases). We don't recommend deploying software in your scratch directory because it'll get automatically deleted after a few weeks.

Note about Commercial Software:
Users wanting to have commercial software deployed on OSCER systems are responsible for the costs associated with licensing. OSCER does not fund commercial software. Prior to purchasing the software, please work with us to verify that the software that you want to buy is compatible with our systems and is allowed by the vendor to be deployed there.

OU Supercomputing Center
for Education & Research
3200 Marshall Avenue, Suite 130
Norman, OK 73072

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Updated 4/21/2017 by OU Supercomputing Center: support@oscer.ou.edu