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Software List

To get the most up-to-date list, log into the Schooner system and run module avail.

Note about software availability:
Some of the software listed below have licensing restrictions and can only be used by eligible users. Please contact us at support@oscer.ou.edu if you have questions about whether you can use a particular software.

454DataAnalysis

Version Toolchain / Variant
2.9  
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ABAWACA

Version Toolchain / Variant
1.00 foss-2018b
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ABySS

Version Toolchain / Variant
1.5.2 goolf-1.4.10
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ACTC

Version Toolchain / Variant
1.1 GCCcore-6.4.0
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AMOS

Version Toolchain / Variant
3.1.0 goolf-1.4.10
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ANSYS_Workbench

Version Toolchain / Variant
17.2  
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ANTLR

Version Toolchain / Variant
2.7.7 intel-2015b-Python-2.7.10
2.7.7 intel-2018a (Current Default Version)
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ANUGA

Version Toolchain / Variant
2.0.2 foss-2016b
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APR

Version Toolchain / Variant
1.6.3 GCCcore-7.3.0
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APR-util

Version Toolchain / Variant
1.6.1 GCCcore-7.3.0
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ATK

Version Toolchain / Variant
2.20.0 GCC-4.9.3-2.25
2.20.0 intel-2016a
2.27.1 foss-2017b (Current Default Version)
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ATLAS

Version Toolchain / Variant
3.10.1 GCC-4.9.3-2.25-LAPACK-3.5.0
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ATSAS

Version Toolchain / Variant
2.8.4 intel-2016a
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AUGUSTUS

Version Toolchain / Variant
3.3.2 foss-2018b-Python-2.7.15
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AdapterRemoval

Version Toolchain / Variant
2.2.2 foss-2018a
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Amber

Version Toolchain / Variant
16 gcc-4.9.3-2.25-cuda
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AutoDock

Version Toolchain / Variant
4.2.6 intel-2016a
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AutoDockFR

Version Toolchain / Variant
mgltools2_1.0 GCC-4.9.3-2.25
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AutoDockVina

Version Toolchain / Variant
1.1.2  
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Autoconf

Version Toolchain / Variant
2.69 foss-2016a
2.69 foss-2016b
2.69 foss-2017b
2.69 GCC-4.9.2
2.69 GCC-4.9.3-2.25
2.69 GCCcore-4.9.3
2.69 GCCcore-6.4.0
2.69 GCCcore-7.3.0
2.69 GCCcore-8.2.0
2.69 GNU-4.9.3-2.25
2.69 goolf-1.4.10
2.69 intel-2016a (Current Default Version)
2.69 intel-2018a
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Automake

Version Toolchain / Variant
1.14 intel-2016a
1.15 foss-2016a
1.15 foss-2016b
1.15 GCC-4.9.2
1.15 GCC-4.9.3-2.25
1.15 GCCcore-4.9.3
1.15 GNU-4.9.3-2.25
1.15 intel-2016a (Current Default Version)
1.15 intel-2018a
1.15.1 GCCcore-6.4.0
1.16.1 foss-2017b
1.16.1 foss-2018a
1.16.1 GCCcore-7.3.0
1.16.1 GCCcore-8.2.0
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Autotools

Version Toolchain / Variant
20150215 foss-2016a
20150215 foss-2016b
20150215 GCC-4.9.2
20150215 GCC-4.9.3-2.25
20150215 GCCcore-4.9.3
20150215 GNU-4.9.3-2.25
20150215 intel-2016a (Current Default Version)
20150215 intel-2018a
20170619 GCCcore-6.4.0
20180311 foss-2017b
20180311 foss-2018a
20180311 GCCcore-7.3.0
20180311 GCCcore-8.2.0
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BBMap

Version Toolchain / Variant
38.36 intel-2016a
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BCFtools

Version Toolchain / Variant
1.9 foss-2018b
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BEDTools

Version Toolchain / Variant
2.25.0 intel-2016a
2.26.0 intel-2016a
2.27.1 foss-2018b (Current Default Version)
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BLAST

Version Toolchain / Variant
2.2.22 Linux_x86_64
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BLAST+

Version Toolchain / Variant
2.2.30 foss-2016b
2.2.30 goolf-1.4.10
2.9.0 foss-2018b (Current Default Version)
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BLAT

Version Toolchain / Variant
3.5 goolf-1.4.10
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BUSCO

Version Toolchain / Variant
3.0.2 foss-2018b-Python-2.7.15
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BWA

Version Toolchain / Variant
0.7.13 intel-2016a
0.7.15 intel-2016a
0.7.17 foss-2018b (Current Default Version)
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BamTools

Version Toolchain / Variant
2.5.1 foss-2018b
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Bazel

Version Toolchain / Variant
0.4.0 2016-11-04
0.11.1 GCCcore-6.4.0
0.12.0 GCCcore-6.4.0 (Current Default Version)
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Beast

Version Toolchain / Variant
2.5.1 foss-2018a
2.5.2 foss-2017b (Current Default Version)
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Bio-Coordinate

Version Toolchain / Variant
1.007001 foss-2016b-BioPerl-1.7.0
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Bio-Graphics

Version Toolchain / Variant
2.40 foss-2016b-BioPerl-1.7.0
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BioPerl

Version Toolchain / Variant
1.6.1 goolf-1.4.10-Perl-5.16.3
1.7.0 foss-2016b-Perl-5.24.0 (Current Default Version)
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Biopython

Version Toolchain / Variant
1.61 goolf-1.4.10-Python-2.7.3
1.68 intel-2016a-Python-2.7.10
1.72 foss-2018b-Python-2.7.15
1.72 foss-2018b-Python-3.6.6 (Current Default Version)
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Bismark

Version Toolchain / Variant
0.10.1 goolf-1.4.10
0.16.3 intel-2016a (Current Default Version)
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Bison

Version Toolchain / Variant
2.7 goolf-1.4.10
3.0.4 foss-2016b
3.0.4 foss-2017b
3.0.4 GCC-4.9.3-binutils-2.25
3.0.4 GCC-4.9.3-2.25
3.0.4 GCCcore-4.9.3
3.0.4 GCCcore-5.4.0
3.0.4 GCCcore-6.4.0
3.0.4 GCCcore-7.2.0
3.0.4 GCCcore-7.3.0
3.0.4 intel-2015b
3.0.4 intel-2016a
3.0.4 iompi-2015.03
3.0.4  
3.0.5 GCCcore-6.4.0
3.0.5 GCCcore-7.3.0
3.0.5 GCCcore-8.2.0
3.0.5  
3.3.2 intel-2018a (Current Default Version)
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Boost

Version Toolchain / Variant
1.51.0 goolf-1.4.10
1.53.0 goolf-1.4.10
1.57.0 foss-2016b
1.57.0 goolf-1.4.10
1.59.0 intel-2016a-Python-2.7.10
1.60.0 foss-2016a
1.61.0 foss-2016b-Python-2.7.12
1.61.0 foss-2016b
1.61.0 GCC-4.9.3-2.25
1.61.0 intel-2016a-Python-2.7.11
1.61.0 intel-2016a
1.65.1 foss-2016b
1.67.0 foss-2018a
1.67.0 foss-2018b (Current Default Version)
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Boost.Python

Version Toolchain / Variant
1.67.0 foss-2018b-Python-2.7.15
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Bowtie

Version Toolchain / Variant
1.1.2 foss-2016a
1.2.2 foss-2017b
1.2.2 foss-2018b (Current Default Version)
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Bowtie2

Version Toolchain / Variant
2.0.2 goolf-1.4.10
2.2.4 goolf-1.4.10
2.2.9 foss-2016a
2.2.9 intel-2016a
2.3.4.1 foss-2017b
2.3.4.2 foss-2018b (Current Default Version)
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CD-HIT

Version Toolchain / Variant
4.6.1 goolf-1.4.10-2012-08-27
4.8.1 foss-2018b (Current Default Version)
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CDO

Version Toolchain / Variant
1.7.1 intel-2016a
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CESM-deps

Version Toolchain / Variant
2 foss-2018b
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CGAL

Version Toolchain / Variant
4.8.1 intel-2016a
4.11.1 foss-2018a-Python-2.7.14 (Current Default Version)
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CGI

Version Toolchain / Variant
4.35 foss-2016b-Perl-5.24.0
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CMake

Version Toolchain / Variant
2.8.12 goolf-1.4.10
3.3.2 GNU-4.9.3-2.25
3.4.1 foss-2016a
3.4.1 intel-2015b
3.4.1 intel-2016a
3.4.3 foss-2017b
3.4.3 GCC-4.9.3-2.25
3.4.3 intel-2016a
3.4.3 iompi-2015.03
3.5.1 intel-2016a
3.5.2 foss-2016a
3.5.2 foss-2016b
3.5.2 GCC-4.9.3-2.25
3.5.2 intel-2016a
3.5.2  
3.6.1 foss-2016b
3.6.1 GCCcore-4.9.3
3.6.1 intel-2016a
3.9.1 GCCcore-6.4.0
3.9.4 GCCcore-6.4.0
3.9.5 GCCcore-6.4.0
3.9.5 intel-2016a
3.9.6  
3.10.2 GCCcore-6.4.0
3.11.4 foss-2017b
3.11.4 GCCcore-6.4.0
3.11.4 GCCcore-7.3.0
3.12.1 GCCcore-7.3.0
3.12.1 intel-2016a
3.13.3 GCCcore-8.2.0 (Current Default Version)
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CONCOCT

Version Toolchain / Variant
1.0.0 foss-2018b-Python-2.7.15
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CP2K

Version Toolchain / Variant
6.1 intel-2018a
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CUDA

Version Toolchain / Variant
5.5.22 GCC-4.8.2
7.5.18 GCC-4.9.3-2.25
7.5.18  
8.0.44 GCC-4.9.3-2.25
8.0.44 intel-2016a
8.0.61_375.26 GCC-5.4.0-2.26
9.1.85 GCC-6.4.0-2.28
9.2.88  
10.1.105 GCC-8.2.0-2.31.1 (Current Default Version)
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Caffe

Version Toolchain / Variant
1.0.0 rc5-GCC-4.9.3-2.25
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CellRanger

Version Toolchain / Variant
2.1.1  
3.0.2 (Current Default Version)
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CheckM

Version Toolchain / Variant
1.0.13 foss-2018b-Python-2.7.15
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Chimera

Version Toolchain / Variant
1.11.2 linux_x86_64
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Chiron

Version Toolchain / Variant
0.3 intel-2016a-GPU-Python-2.7.12
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ClustalW2

Version Toolchain / Variant
2.1 goolf-1.4.10
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CoreNLP

Version Toolchain / Variant
3.9.1 Java-1.8.0_152
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CppUnit

Version Toolchain / Variant
1.12.1 foss-2016b
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Cufflinks

Version Toolchain / Variant
2.2.1 intel-2016a-Python-2.7.10-Boost-1.59.0
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DAS_Tool

Version Toolchain / Variant
1.1.1 foss-2018b-R-3.5.1-Python-2.7.15
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DBus

Version Toolchain / Variant
1.13.6 GCCcore-6.4.0
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DIAMOND

Version Toolchain / Variant
0.8.5 intel-2016a
0.8.33 foss-2016b
0.9.22 foss-2018b (Current Default Version)
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DendroPy

Version Toolchain / Variant
4.4.0 foss-2018b-Python-2.7.15
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Doxygen

Version Toolchain / Variant
1.8.3.1 goolf-1.4.10
1.8.10 intel-2015b
1.8.10 intel-2016a
1.8.11 foss-2016b
1.8.11 intel-2016a
1.8.11 iompi-2015.03 (Current Default Version)
1.8.13 foss-2017b
1.8.13 GCCcore-6.4.0
1.8.14 GCCcore-7.3.0
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EMBOSS

Version Toolchain / Variant
6.6.0 foss-2018b
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ESMF

Version Toolchain / Variant
7.1.0r foss-2018b
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Eigen

Version Toolchain / Variant
3.2.7 intel-2016a
3.2.9 intel-2016a
3.3.3 foss-2017b
3.3.4 (Current Default Version)
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Exonerate

Version Toolchain / Variant
2.4.0 foss-2018b
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FASTA

Version Toolchain / Variant
36.3.5e goolf-1.4.10
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FASTX-Toolkit

Version Toolchain / Variant
0.0.13.2 goolf-1.4.10
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FFTW

Version Toolchain / Variant
3.3.3 gompi-1.4.10
3.3.4 gompi-2016a
3.3.4 gompi-2016b
3.3.4 intel-2016a
3.3.6 gompi-2017b
3.3.7 gompi-2018a
3.3.7 gompic-2018a
3.3.7 intel-2018a
3.3.8 gompi-2018b
3.3.8 gompic-2019a (Current Default Version)
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FFmpeg

Version Toolchain / Variant
3.0.2 GCC-4.9.3-2.25
3.0.2 intel-2016a
3.4.2 foss-2017b (Current Default Version)
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FIAT

Version Toolchain / Variant
1.6.0 foss-2016b-Python-2.7.12
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FLTK

Version Toolchain / Variant
1.3.3 intel-2016a
1.3.4 foss-2017b (Current Default Version)
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FLUENT

Version Toolchain / Variant
16.2  
17.2 (Current Default Version)
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FastME

Version Toolchain / Variant
2.1.6.1 foss-2018b
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FastQC

Version Toolchain / Variant
0.10.1 Java-1.7.0_80
0.11.5 Java-1.8.0_91 (Current Default Version)
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FragGeneScan

Version Toolchain / Variant
1.30 foss-2016b
1.30 intel-2016a
1.31 foss-2017b
1.31 foss-2018b (Current Default Version)
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FragGeneScan-Plus

Version Toolchain / Variant
git master-foss-2016b
git master-intel-2016a (Current Default Version)
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FriBidi

Version Toolchain / Variant
1.0.1 foss-2017b
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GAMESS-US

Version Toolchain / Variant
20180214 R1-intel-2016a
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GAMS

Version Toolchain / Variant
27.1.0  
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GATK

Version Toolchain / Variant
3.6 Java-1.8.0_91
3.8 0-Java-1.8.0_141
4.1.0.0 intel-2016a-Python-3.6.3 (Current Default Version)
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GCC

Version Toolchain / Variant
4.6.3  
4.7.2  
4.8.1  
4.8.2  
4.9.2  
4.9.3 binutils-2.25
4.9.3 2.25
5.4.0 2.26
6.4.0 2.28
7.2.0 2.29
7.3.0 2.30
8.2.0 2.31.1 (Current Default Version)
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GCCcore

Version Toolchain / Variant
4.9.3  
5.4.0  
6.4.0  
7.2.0  
7.3.0  
8.2.0 (Current Default Version)
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GD

Version Toolchain / Variant
2.53 foss-2016b-Perl-5.24.0
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GDAL

Version Toolchain / Variant
2.0.0 intel-2016a
2.0.2 intel-2016a
2.1.0 foss-2016b
2.1.0 intel-2016a
2.2.3 foss-2017b-Python-2.7.14
2.2.3 foss-2018b-Python-2.7.15 (Current Default Version)
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GEOS

Version Toolchain / Variant
3.5.0 intel-2016a-Python-2.7.11
3.5.0 intel-2016a-Python-2.7.12
3.6.2 foss-2017b-Python-2.7.14
3.6.2 foss-2018b-Python-2.7.15
3.6.2 foss-2018b-Python-3.6.6 (Current Default Version)
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GLPK

Version Toolchain / Variant
4.65 foss-2017b
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GLib

Version Toolchain / Variant
2.44.1 intel-2016a
2.48.0 GCC-4.9.3-2.25
2.48.0 intel-2016a
2.49.5 foss-2016b
2.49.5 intel-2016a
2.53.5 GCCcore-6.4.0
2.54.3 foss-2017b
2.54.3 GCCcore-6.4.0
2.54.3 GCCcore-7.3.0 (Current Default Version)
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GMP

Version Toolchain / Variant
6.0.0a GCC-4.9.2
6.0.0a GCC-4.9.3-2.25
6.1.0 foss-2016a
6.1.0 intel-2016a
6.1.1 foss-2016b
6.1.1 intel-2016a
6.1.1 intel-2018a
6.1.2 foss-2017b
6.1.2 GCCcore-6.4.0
6.1.2 GCCcore-7.3.0
6.1.2 intel-2016a (Current Default Version)
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GMT

Version Toolchain / Variant
4.5.14 intel-2016a
5.2.1 intel-2016a (Current Default Version)
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GNU

Version Toolchain / Variant
4.9.3 2.25
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GObject-Introspection

Version Toolchain / Variant
1.48.0 GCC-4.9.3-2.25
1.48.0 intel-2016a
1.53.5 foss-2017b-Python-2.7.14
1.54.1 foss-2017b-Python-2.7.14 (Current Default Version)
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GPUAutodock

Version Toolchain / Variant
4.0.0 CUDA-9.2.88
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GROMACS

Version Toolchain / Variant
4.6.5 goolf-1.4.10-hybrid
5.1.2 foss-2016a-hybrid
5.1.2 foss-2016b-hybrid-gpu
2018.1 foss-2016b-hybrid-gpu
2019.2 fosscuda-2019a (Current Default Version)
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GSL

Version Toolchain / Variant
1.16 goolf-1.4.10
1.16 intel-2015b
1.16 intel-2016a
2.1 intel-2016a
2.3 foss-2016b
2.4 GCCcore-6.4.0
2.4 intel-2018a
2.5 foss-2017b
2.5 GCC-7.3.0-2.30 (Current Default Version)
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GTK+

Version Toolchain / Variant
2.24.30 GCC-4.9.3-2.25
2.24.30 intel-2016a
2.24.32 foss-2017b (Current Default Version)
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Gaussian

Version Toolchain / Variant
g09  
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Gaussview

Version Toolchain / Variant
g09  
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Gdk-Pixbuf

Version Toolchain / Variant
2.35.1 GCC-4.9.3-2.25
2.35.1 intel-2016a
2.36.11 foss-2017b (Current Default Version)
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Ghostscript

Version Toolchain / Variant
9.16 intel-2016a
9.19 intel-2016a
9.22 foss-2017b-cairo-1.14.8 (Current Default Version)
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GrADS

Version Toolchain / Variant
2.1.1.b0 bin
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GraphicsMagick

Version Toolchain / Variant
1.3.28 foss-2017b
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Guile

Version Toolchain / Variant
1.8.8 intel-2018a
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HDF

Version Toolchain / Variant
4.2.13 iomkl-2018a-no-netcdf
Back to the list

HDF5

Version Toolchain / Variant
1.8.10 patch1-goolf-1.4.10
1.8.13 intel-2015b
1.8.13 intel-2016a
1.8.15 patch1-intel-2015b
1.8.16 GCC-4.9.3-2.25
1.8.16 intel-2016a
1.8.16 iompi-2015.03
1.8.17 foss-2016b
1.8.17 intel-2016a
1.8.18 intel-2016a
1.8.19 intel-2018a
1.10.1 foss-2017b-serial
1.10.1 foss-2017b
1.10.1 foss-2018a
1.10.1 intel-2016a-serial
1.10.1 intel-2016a
1.10.1 iomkl-2018a
1.10.1 iompi-2016.07 (Current Default Version)
1.10.2 foss-2018b
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HISAT2

Version Toolchain / Variant
2.1.0 foss-2017b
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HMMER

Version Toolchain / Variant
3.1b1 foss-2016b
3.1b1 goolf-1.4.10
3.2.1 foss-2017b
3.2.1 foss-2018b (Current Default Version)
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HPL

Version Toolchain / Variant
2.1 intel-2016a
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HTSeq

Version Toolchain / Variant
0.6.1p1 intel-2016a-Python-2.7.10
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HTSlib

Version Toolchain / Variant
1.9 foss-2018b
1.9 GCC-6.4.0-2.28 (Current Default Version)
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Hadoop

Version Toolchain / Variant
2.6.0 cdh5.8.0-native
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HarfBuzz

Version Toolchain / Variant
1.2.7 GCC-4.9.3-2.25
1.2.7 intel-2016a
1.7.1 foss-2017b
1.7.5 foss-2017b (Current Default Version)
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Hypre

Version Toolchain / Variant
2.11.1 foss-2016b
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ICU

Version Toolchain / Variant
61.1 GCCcore-7.3.0
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IDBA-UD

Version Toolchain / Variant
1.1.1 goolf-1.4.10
1.1.3 foss-2017b
1.1.3 foss-2018b (Current Default Version)
Back to the list

ImageMagick

Version Toolchain / Variant
7.0.4 0-intel-2016a
7.0.7 30-foss-2017b-Ghostscript-9.22-cairo-1.14.8 (Current Default Version)
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JUnit

Version Toolchain / Variant
4.12 Java-1.8.0_91
4.12 Java-1.8.0_92
4.12 Java-1.8.0_191 (Current Default Version)
Back to the list

JasPer

Version Toolchain / Variant
1.900.1 GCC-4.9.3-2.25
1.900.1 intel-2016a
1.900.1 iompi-2015.03
2.0.14 foss-2017b
2.0.14 GCCcore-6.4.0
2.0.14 GCCcore-7.3.0 (Current Default Version)
Back to the list

Java

Version Toolchain / Variant
1.7.0_21  
1.7.0_60  
1.7.0_80  
1.8.0_45  
1.8.0_66  
1.8.0_77  
1.8.0_91  
1.8.0_92  
1.8.0_121  
1.8.0_141  
1.8.0_152  
1.8.0_162  
1.8.0_181  
1.8.0_191 (Current Default Version)
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Jellyfish

Version Toolchain / Variant
2.2.6 foss-2018a
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Keras

Version Toolchain / Variant
2.0.4 intel-2016a-Python-2.7.12
2.2.0 foss-2018a-Python-3.6.4 (Current Default Version)
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LAME

Version Toolchain / Variant
3.100 GCCcore-6.4.0
Back to the list

LAMMPS

Version Toolchain / Variant
11Aug17 gompi-2017b
12Dec18 gompi-2016a
14May16 gompi-2016a
16Mar18 gompi-2017b
17Nov16 gompi-2016a (Current Default Version)
17Nov16gong gompi-2016a
22Aug18 foss-2018a
22Aug18 goolfc-2018a-gpu
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LLVM

Version Toolchain / Variant
3.8.0 intel-2016a
3.8.1 foss-2016b
3.8.1 intel-2016a
5.0.0 foss-2017b
5.0.1 GCCcore-6.4.0
6.0.0 GCCcore-7.3.0 (Current Default Version)
Back to the list

LMDB

Version Toolchain / Variant
0.9.18 GCC-4.9.3-2.25
0.9.22 GCCcore-7.3.0 (Current Default Version)
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LevelDB

Version Toolchain / Variant
1.18 GCC-4.9.3-2.25
Back to the list

LibTIFF

Version Toolchain / Variant
4.0.4 intel-2016a
4.0.6 foss-2016b
4.0.6 GCC-4.9.3-2.25
4.0.6 intel-2016a
4.0.9 foss-2017b
4.0.9 GCCcore-6.4.0
4.0.9 GCCcore-7.3.0 (Current Default Version)
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LibUUID

Version Toolchain / Variant
1.0.3 GCCcore-6.4.0
1.0.3 intel-2015b (Current Default Version)
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Libint

Version Toolchain / Variant
1.1.6 intel-2018a
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LittleCMS

Version Toolchain / Variant
2.7 intel-2016a
2.9 foss-2017b (Current Default Version)
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Loci

Version Toolchain / Variant
4.0 beta-8-intel-2016a
4.0 beta-10-intel-2016a (Current Default Version)
Back to the list

M4

Version Toolchain / Variant
1.4.16 goolf-1.4.10
1.4.17 foss-2016a
1.4.17 foss-2016b
1.4.17 foss-2017b
1.4.17 GCC-4.9.2
1.4.17 GCC-4.9.3-binutils-2.25
1.4.17 GCC-4.9.3-2.25
1.4.17 GCCcore-4.9.3
1.4.17 GCCcore-5.4.0
1.4.17 GCCcore-6.4.0
1.4.17 GNU-4.9.3-2.25
1.4.17 intel-2015b
1.4.17 intel-2016a
1.4.17 iompi-2015.03
1.4.17  
1.4.18 foss-2017b
1.4.18 GCCcore-5.4.0
1.4.18 GCCcore-6.4.0
1.4.18 GCCcore-7.2.0
1.4.18 GCCcore-7.3.0
1.4.18 GCCcore-8.2.0
1.4.18 intel-2016a
1.4.18 intel-2018a
1.4.18 (Current Default Version)
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MACS2

Version Toolchain / Variant
2.1.2.1 intel-2016a-Python-2.7.10
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MACSE

Version Toolchain / Variant
2.03 Java-1.8.0_191
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MAFFT

Version Toolchain / Variant
7.130 goolf-1.4.10-with-extensions
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MARE

Version Toolchain / Variant
0.1.2 GCCcore-6.4.0-rc
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MATLAB

Version Toolchain / Variant
2015a (Current Default Version)
2017a  
2018a Prerelease
2018a  
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MCL

Version Toolchain / Variant
14.137 foss-2018b
14.137 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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MEGAHIT

Version Toolchain / Variant
1.0.6 intel-2016a
1.1.4 foss-2018b-Python-2.7.15 (Current Default Version)
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MEGAN

Version Toolchain / Variant
5.11.3  
6.6.0 (Current Default Version)
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METIS

Version Toolchain / Variant
5.1.0 foss-2016b
5.1.0 foss-2018b
5.1.0 GCCcore-6.4.0
5.1.0 intel-2016a (Current Default Version)
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MMseqs2

Version Toolchain / Variant
8 fac81-foss-2018b
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MPFR

Version Toolchain / Variant
3.1.4 intel-2016a
4.0.1 GCCcore-6.4.0 (Current Default Version)
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MS2

Version Toolchain / Variant
2.0 intel-2016a
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MUMPS

Version Toolchain / Variant
5.0.1 foss-2016b-parmetis
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MUMmer

Version Toolchain / Variant
3.23 goolf-1.4.10
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MUSCLE

Version Toolchain / Variant
3.8.1551 intel-2016a
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MVAPICH2

Version Toolchain / Variant
2.2rc2 iccifort-2016.1.150-GCC-4.9.3-2.25
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Madagascar

Version Toolchain / Variant
1.7 foss-2016b
Back to the list

Mako

Version Toolchain / Variant
1.0.4 foss-2016b-Python-2.7.12
1.0.4 intel-2016a-Python-2.7.12
1.0.7 foss-2017b-Python-2.7.14
1.0.7 foss-2018a-Python-2.7.14
1.0.7 foss-2018b-Python-2.7.15 (Current Default Version)
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Maq

Version Toolchain / Variant
0.7.0  
Back to the list

Mathematica

Version Toolchain / Variant
9.0.1  
11.0.1 (Current Default Version)
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Maven

Version Toolchain / Variant
3.3.9  
Back to the list

MaxBin

Version Toolchain / Variant
2.2.6 foss-2017b-Perl-5.28.0
2.2.6 foss-2018b-Perl-5.28.0 (Current Default Version)
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MeGAMerge

Version Toolchain / Variant
1.1  
Back to the list

Mesa

Version Toolchain / Variant
11.1.2 GCC-4.9.3-2.25
11.2.1 intel-2016a
12.0.2 foss-2016b
12.0.2 intel-2016a
17.2.5 foss-2017b
17.3.6 foss-2017b
17.3.6 foss-2018a
18.1.1 foss-2018b (Current Default Version)
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MetaBAT

Version Toolchain / Variant
2.12.1  
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MetaPhlAn2

Version Toolchain / Variant
2.7.8 foss-2018b-Python-3.6.6
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MetaVelvet

Version Toolchain / Variant
1.2.01 goolf-1.4.10
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Miniconda2

Version Toolchain / Variant
4.4.10  
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Miniconda3

Version Toolchain / Variant
4.4.10  
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Mothur

Version Toolchain / Variant
1.30.2 goolf-1.4.10
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MrBayes

Version Toolchain / Variant
3.2.6 foss-2018a
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NAMD

Version Toolchain / Variant
2.10 intel-2016a-mpi
2.11 intel-2016a-mpi
2.11 intel-2016aMIC (Current Default Version)
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NASM

Version Toolchain / Variant
2.11.05 intel-2016a
2.11.08 intel-2016a
2.12.01 GCC-4.9.3-2.25
2.12.01 intel-2016a
2.12.02 foss-2016b
2.12.02 intel-2016a (Current Default Version)
2.13.01 foss-2017b
2.13.01 GCCcore-6.4.0
2.13.02 GCCcore-6.4.0
2.13.03 foss-2017b
2.13.03 GCCcore-6.4.0
2.13.03 GCCcore-7.3.0
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NCL

Version Toolchain / Variant
6.3.0 OPeNDAP-GCC-4.8.2
6.3.0 (Current Default Version)
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NCO

Version Toolchain / Variant
4.4.7 intel-2015b-Python-2.7.10
4.7.6 intel-2018a (Current Default Version)
Back to the list

NGS

Version Toolchain / Variant
1.2.3 intel-2016a
2.9.1 foss-2017b-Java-1.8.0_191 (Current Default Version)
Back to the list

NLopt

Version Toolchain / Variant
2.4.2 foss-2016b
2.4.2 GCCcore-7.3.0
2.4.2 intel-2016a (Current Default Version)
Back to the list

NSPR

Version Toolchain / Variant
4.20 GCCcore-6.4.0
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NSS

Version Toolchain / Variant
3.39 GCCcore-6.4.0
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NTL

Version Toolchain / Variant
10.5.0 intel-2016a
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NVIDIA_GPU_SDK

Version Toolchain / Variant
4.0.17 GCC-4.9.3-2.25
Back to the list

NWChem

Version Toolchain / Variant
6.8.revision47 intel-2018a-2017-12-14-Python-2.7.14
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ORCA

Version Toolchain / Variant
4.0.1 OpenMPI-2.0.2
Back to the list

OpenBLAS

Version Toolchain / Variant
0.2.6 gompi-1.4.10-LAPACK-3.4.2
0.2.9 intel-2016a-LAPACK-3.5.0
0.2.15 GCC-4.9.3-2.25-LAPACK-3.6.0
0.2.18 GCC-5.4.0-2.26-LAPACK-3.6.1
0.2.19 foss-2016b-LAPACK-3.7.0
0.2.20 GCC-6.4.0-2.28
0.3.1 GCC-7.3.0-2.30
0.3.5 GCC-8.2.0-2.31.1 (Current Default Version)
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OpenCL

Version Toolchain / Variant
2.2 GCC-4.9.3-2.25
Back to the list

OpenCV

Version Toolchain / Variant
3.1.0 GCC-4.9.3-2.25
3.1.0 intel-2016a
3.4.1 foss-2017b-Python-3.6.4 (Current Default Version)
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OpenFOAM

Version Toolchain / Variant
v1612+ foss-2018a
4.0 intel-2016a (Current Default Version)
Back to the list

OpenMPI

Version Toolchain / Variant
1.4.5 GCC-4.6.3-no-OFED
1.6.4 GCC-4.7.2
1.6.5 GCC-4.8.1
1.6.5 GCC-4.8.2
1.8.8 GNU-4.9.3-2.25
1.8.8 iccifort-2015.3.187-GNU-4.9.3-2.25
1.10.2 GCC-4.9.3-2.25
1.10.3 GCC-5.4.0-2.26
1.10.3 iccifort-2016.3.210-GCC-5.4.0-2.26
2.0.2 GCC-6.4.0-2.28
2.1.1 GCC-6.4.0-2.28 (Current Default Version)
2.1.2 GCC-6.4.0-2.28
2.1.2 gcccuda-2018a
2.1.2 iccifort-2018.1.163-GCC-6.4.0-2.28
3.1.1 GCC-7.3.0-2.30
3.1.3 gcccuda-2019a
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OpenPGM

Version Toolchain / Variant
5.2.122 goolf-1.4.10
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OpenSSL

Version Toolchain / Variant
1.0.2h intel-2016a
Back to the list

OrthoFinder

Version Toolchain / Variant
2.3.3 foss-2018b-Python-2.7.15
Back to the list

PAML

Version Toolchain / Variant
4.9h intel-2016a
Back to the list

PCRE

Version Toolchain / Variant
8.37 intel-2016a
8.38 foss-2016b
8.38 GCC-4.9.3-2.25
8.38 intel-2016a
8.39 foss-2016b
8.39 intel-2016a
8.41 foss-2017b
8.41 GCCcore-6.4.0
8.41 GCCcore-7.3.0 (Current Default Version)
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PEITHO

Version Toolchain / Variant
0.1.3 intel-2016a-Python-2.7.11
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PETSc

Version Toolchain / Variant
3.7.5 foss-2016b-downloaded-deps
3.7.5 intel-2016a-shared-Python-2.7.11
3.9.1 intel-2016a-downloaded-deps (Current Default Version)
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PETSc-lite

Version Toolchain / Variant
3.7.5 foss-2016b-Python-2.7.12
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PFLOTRAN

Version Toolchain / Variant
current intel-2016a
Back to the list

PIL

Version Toolchain / Variant
1.1.7 foss-2016b-Python-2.7.12
1.1.7 intel-2016a-Python-2.7.11
1.1.7 intel-2016a-Python-2.7.12 (Current Default Version)
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PLINK

Version Toolchain / Variant
1.9b_4.1 x86_64
Back to the list

PLUMED

Version Toolchain / Variant
2.4.0 intel-2018a
Back to the list

PLplot

Version Toolchain / Variant
5.13.0 foss-2017b-Java-1.8.0_181-Python-2.7.14
Back to the list

PROJ

Version Toolchain / Variant
4.9.2 foss-2016b
4.9.2 intel-2016a
4.9.3 foss-2017b
5.0.0 foss-2018b (Current Default Version)
Back to the list

Pandoc

Version Toolchain / Variant
2.5  
Back to the list

Pango

Version Toolchain / Variant
1.40.1 GCC-4.9.3-2.25
1.40.1 intel-2016a
1.41.0 foss-2017b
1.41.1 foss-2017b (Current Default Version)
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Panoply

Version Toolchain / Variant
4.8.10 Java-1.8.0_91
Back to the list

ParMETIS

Version Toolchain / Variant
4.0.3 foss-2016b
4.0.3 intel-2015b
4.0.3 intel-2016a-shared (Current Default Version)
Back to the list

ParaView

Version Toolchain / Variant
5.1.2 intel-2016a-mpi
5.4.1 foss-2016b-mpi
5.4.1 foss-2018a-mpi (Current Default Version)
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Perl

Version Toolchain / Variant
5.16.3 goolf-1.4.10
5.20.3 foss-2016a
5.20.3 intel-2016a
5.22.1 foss-2016a-bare
5.24.0 foss-2016b
5.26.0 foss-2017b
5.26.0 GCCcore-6.4.0
5.26.1 GCCcore-6.4.0
5.28.0 foss-2017b
5.28.0 GCCcore-7.3.0 (Current Default Version)
Back to the list

Pillow

Version Toolchain / Variant
5.0.0 foss-2018a-Python-3.6.4
5.3.0 foss-2018b-Python-3.6.6 (Current Default Version)
Back to the list

PorthoMCL

Version Toolchain / Variant
05072019 foss-2018b-Python-2.7.15
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Prodigal

Version Toolchain / Variant
2.6.3 GCC-4.9.3-2.25
Back to the list

PuLP

Version Toolchain / Variant
1.6.1 intel-2016a-Python-2.7.10
Back to the list

PyCUDA

Version Toolchain / Variant
2016.1.2 intel-2016a-Python-2.7.11
Back to the list

PyQt

Version Toolchain / Variant
4.11.4 intel-2016a-Python-2.7.11
Back to the list

PyYAML

Version Toolchain / Variant
3.12 foss-2018a-Python-3.6.4
3.12 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

Pylint

Version Toolchain / Variant
1.9.3 foss-2018b-Python-2.7.15
Back to the list

Pysam

Version Toolchain / Variant
0.15.1 foss-2018b-Python-2.7.15
Back to the list

Python

Version Toolchain / Variant
2.7.3 goolf-1.4.10
2.7.9 intel-2016a
2.7.10 GCC-4.9.3-2.25-bare
2.7.10 GCC-4.9.3-2.25
2.7.10 intel-2015b
2.7.10 intel-2016a
2.7.11 foss-2016a
2.7.11 intel-2016a
2.7.12 foss-2016b
2.7.12 intel-2016a
2.7.14 foss-2017b
2.7.14 foss-2018a
2.7.14 GCCcore-6.4.0-bare
2.7.14 intel-2018a
2.7.15 foss-2018b
2.7.15 GCCcore-7.3.0-bare
3.5.1 intel-2016a
3.6.3 intel-2016a
3.6.4 foss-2017b
3.6.4 foss-2018a
3.6.4 intel-2018a
3.6.6 foss-2018b (Current Default Version)
Back to the list

QIIME

Version Toolchain / Variant
1.9.1 intel-2016a-Python-2.7.10-numpy-1.10.4
Back to the list

QIIME2

Version Toolchain / Variant
2018.11 Miniconda2
2018.11 Miniconda3
2019.4 Miniconda3 (Current Default Version)
Back to the list

QUAST

Version Toolchain / Variant
5.0.2 foss-2018b-Python-2.7.15
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Qt

Version Toolchain / Variant
4.8.7 intel-2016a
Back to the list

Qt5

Version Toolchain / Variant
5.7.0 foss-2016b
5.7.0 intel-2016a
5.8.0 foss-2017b
5.10.1 foss-2018a (Current Default Version)
Back to the list

QuantumESPRESSO

Version Toolchain / Variant
5.0.2 goolf-1.4.10
5.2.1 intel-2016a
5.4.0 intel-2016a (Current Default Version)
Back to the list

Qwt

Version Toolchain / Variant
5.2.0 intel-2016a
Back to the list

R

Version Toolchain / Variant
3.3.2 foss-2016b
3.3.2 intel-2016a
3.4.0 intel-2016a (Current Default Version)
3.4.1 foss-2016b-X11-20160819
3.5.1 foss-2018b-Python-2.7.15
3.5.1 intel-2016a
Back to the list

RADProc

Version Toolchain / Variant
master foss-2018a
Back to the list

RAxML

Version Toolchain / Variant
8.1.1 goolf-1.4.10-mpi-avx
8.2.4 intel-2015b-hybrid-avx2 (Current Default Version)
Back to the list

RDP-Classifier

Version Toolchain / Variant
2.7 Java-1.7.0_60
Back to the list

RIP

Version Toolchain / Variant
4.5 goolf-1.4.10
Back to the list

RSEM

Version Toolchain / Variant
1.3.0 intel-2016a
Back to the list

RSEQtools

Version Toolchain / Variant
0.6 goolf-1.4.10
Back to the list

Ray

Version Toolchain / Variant
2.3.1 intel-2016a
Back to the list

Rosetta

Version Toolchain / Variant
2016.46.59086 foss-2016b
Back to the list

Ruby

Version Toolchain / Variant
2.6.1 GCCcore-7.3.0
Back to the list

SAMtools

Version Toolchain / Variant
0.1.20 intel-2016a
1.2 goolf-1.4.10 (Current Default Version)
1.3 intel-2016a
1.9 foss-2018b
1.9 intel-2016a
Back to the list

SCOTCH

Version Toolchain / Variant
6.0.4 foss-2016b
6.0.4 intel-2016a
6.0.6 foss-2018a (Current Default Version)
Back to the list

SCons

Version Toolchain / Variant
2.5.0 foss-2016b-Python-2.7.12
3.0.1 GCCcore-7.3.0-Python-2.7.15-bare (Current Default Version)
Back to the list

SIP

Version Toolchain / Variant
4.18 intel-2016a-Python-2.7.11
Back to the list

SMALT

Version Toolchain / Variant
0.7.5 goolf-1.4.10
Back to the list

SOAPdenovo

Version Toolchain / Variant
1.05 goolf-1.4.10
Back to the list

SPAdes

Version Toolchain / Variant
3.9.0 foss-2016a
3.13.0 foss-2018b
3.13.1 foss-2018b (Current Default Version)
Back to the list

SPECFEM2D

Version Toolchain / Variant
stable intel-2016a
Back to the list

SQLite

Version Toolchain / Variant
3.8.8.1 intel-2016a
3.8.10 GCC-4.9.3-2.25
3.8.10.2 GCC-4.9.3-2.25
3.8.10.2 intel-2015b
3.8.10.2 intel-2016a
3.9.2 foss-2016a
3.9.2 intel-2016a
3.13.0 foss-2016b
3.13.0 intel-2016a
3.20.1 foss-2017b
3.20.1 GCCcore-6.4.0
3.20.1 intel-2016a
3.21.0 GCCcore-6.4.0
3.24.0 GCCcore-7.3.0 (Current Default Version)
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STAR

Version Toolchain / Variant
2.5.1b intel-2016a
Back to the list

SUPERFLIP

Version Toolchain / Variant
20140213T0848  
Back to the list

SWIG

Version Toolchain / Variant
3.0.8 intel-2016a-Python-2.7.11
3.0.10 intel-2016a-Python-2.7.12
3.0.12 foss-2017b-Python-2.7.14
3.0.12 foss-2018b-Python-2.7.15
3.0.12 foss-2018b-Python-3.6.6 (Current Default Version)
Back to the list

SageMath

Version Toolchain / Variant
8.1 gompi-2017b
Back to the list

ScaLAPACK

Version Toolchain / Variant
2.0.2 gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2
2.0.2 gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0
2.0.2 gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
2.0.2 gompi-2017b-OpenBLAS-0.2.20
2.0.2 gompi-2018a-OpenBLAS-0.2.20
2.0.2 gompi-2018b-OpenBLAS-0.3.1
2.0.2 gompic-2018a-OpenBLAS-0.2.20
2.0.2 gompic-2019a-OpenBLAS-0.3.5 (Current Default Version)
Back to the list

Schrodinger

Version Toolchain / Variant
2017 1
2019 1 (Current Default Version)
Back to the list

ScienceTools

Version Toolchain / Variant
v10r0p5  
Back to the list

ScientificPython

Version Toolchain / Variant
2.9.4 foss-2016b-Python-2.7.12
2.9.4 intel-2016a-Python-2.7.11 (Current Default Version)
Back to the list

SeismicUnix

Version Toolchain / Variant
44R5 intel-2016a
Back to the list

Serf

Version Toolchain / Variant
1.3.9 GCCcore-7.3.0
Back to the list

Spark

Version Toolchain / Variant
2.0.0  
2.2.0 Hadoop-2.6-Java-1.7.0_80
2.2.0 Hadoop-2.6-Java-1.8.0_152 (Current Default Version)
Back to the list

Stacks

Version Toolchain / Variant
1.41 intel-2016a
2.3e foss-2018a (Current Default Version)
Back to the list

Stampy

Version Toolchain / Variant
1.0.29 intel-2016a-Python-2.7.10
Back to the list

Subversion

Version Toolchain / Variant
1.9.9 GCCcore-7.3.0
Back to the list

SuiteSparse

Version Toolchain / Variant
4.4.6 intel-2015b-ParMETIS-4.0.3
4.5.3 foss-2016b-ParMETIS-4.0.3
5.1.2 foss-2018b-METIS-5.1.0 (Current Default Version)
Back to the list

SuperLU

Version Toolchain / Variant
5.2.1 intel-2016a-shared
Back to the list

Szip

Version Toolchain / Variant
2.1 foss-2016b
2.1 GCC-4.9.3-2.25
2.1 GCCcore-5.4.0
2.1 goolf-1.4.10
2.1 intel-2015b
2.1 intel-2016a
2.1 iompi-2015.03
2.1.1 foss-2017b
2.1.1 GCCcore-6.4.0
2.1.1 GCCcore-7.3.0
2.1.1 iomkl-2018a (Current Default Version)
Back to the list

TauDEM

Version Toolchain / Variant
5.3.8 foss-2017b
Back to the list

Tcl

Version Toolchain / Variant
8.5.12 intel-2016a
8.6.3 intel-2016a
8.6.4 foss-2016a
8.6.4 GCC-4.9.3-2.25
8.6.4 intel-2015b
8.6.4 intel-2016a
8.6.5 foss-2016b
8.6.5 intel-2016a
8.6.7 GCCcore-6.4.0
8.6.7 intel-2016a
8.6.8 foss-2017b
8.6.8 GCCcore-6.4.0
8.6.8 GCCcore-7.3.0 (Current Default Version)
Back to the list

TensorFlow

Version Toolchain / Variant
0.11.0 rc2-intel-2016a-Python-2.7.11
1.0.0 intel-2016a-Python-2.7.11 (Current Default Version)
1.0.1 intel-2016a-GPU-Python-2.7.12
1.1.0 intel-2016a-Python-2.7.12
1.8.0 foss-2018a-GPU-Python-3.6.4
1.8.0 foss-2018a-Python-3.6.4
1.8.0 intel-2018a-skylake-Python-3.6.4
Back to the list

Theano

Version Toolchain / Variant
0.6.0 goolf-1.4.10-Python-2.7.3
1.0.2 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

Tk

Version Toolchain / Variant
8.6.3 intel-2016a-no-X11
8.6.4 foss-2016a-no-X11
8.6.4 GCC-4.9.3-2.25-no-X11
8.6.4 GCC-4.9.3-2.25
8.6.4 intel-2015b-no-X11
8.6.4 intel-2016a-no-X11
8.6.5 foss-2016b
8.6.5 intel-2016a
8.6.8 foss-2017b
8.6.8 foss-2018a
8.6.8 GCCcore-7.3.0 (Current Default Version)
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Tkinter

Version Toolchain / Variant
2.7.15 foss-2018b-Python-2.7.15
3.6.4 foss-2018a-Python-3.6.4
3.6.6 foss-2018b-Python-3.6.6 (Current Default Version)
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TopHat

Version Toolchain / Variant
2.1.0 intel-2016a
Back to the list

Triangle

Version Toolchain / Variant
1.6 gcc-4.8.5
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Trim_Galore

Version Toolchain / Variant
0.3.7 intel-2016a
0.4.1 intel-2016a (Current Default Version)
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Trimmomatic

Version Toolchain / Variant
0.32 Java-1.7.0_80
0.35 Java-1.7.0_80
0.38 Java-1.8.0_191 (Current Default Version)
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Trinity

Version Toolchain / Variant
2.2.0 foss-2016a
2.8.4 foss-2017b
2.8.4 foss-2018b (Current Default Version)
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UDUNITS

Version Toolchain / Variant
2.1.24 goolf-1.4.10
2.2.19 intel-2015b
2.2.19 intel-2016a
2.2.25 foss-2017b
2.2.26 foss-2018b
2.2.26 intel-2018a (Current Default Version)
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VCFtools

Version Toolchain / Variant
0.1.14 intel-2016a
0.1.16 foss-2017b-Perl-5.26.1 (Current Default Version)
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VMD

Version Toolchain / Variant
1.9.3 foss-2017b-Python-2.7.14
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VTK

Version Toolchain / Variant
7.0.0 intel-2016a-Python-2.7.10
8.0.1 intel-2016a-Python-2.7.12 (Current Default Version)
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Velvet

Version Toolchain / Variant
1.2.07 goolf-1.4.10
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Vim

Version Toolchain / Variant
8.0 foss-2016a-Python-2.7.11
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VirtualGL

Version Toolchain / Variant
2.6.1 intel-2016a
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WPS

Version Toolchain / Variant
3.7 intel-2016a-dmpar
3.8 intel-2016a-dmpar (Current Default Version)
Back to the list

WRF

Version Toolchain / Variant
3.6.1 intel-2016a-dmpar
3.7 intel-2016a-dmpar
3.7 iompi-2015.03-dmpar
3.7.1 intel-2016a-dmpar-chem
3.7.1 intel-2016a-dmpar (Current Default Version)
3.8.0 intel-2016a-dmpar
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X11

Version Toolchain / Variant
20160819 foss-2016b
20160819 intel-2016a
20171023 GCCcore-6.4.0
20180131 foss-2017b
20180131 GCCcore-6.4.0
20180604 GCCcore-7.3.0 (Current Default Version)
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XML-LibXML

Version Toolchain / Variant
2.0132 GCCcore-7.3.0-Perl-5.28.0
Back to the list

XML-Parser

Version Toolchain / Variant
2.44_01 foss-2017b-Perl-5.26.0
2.44_01 GCCcore-6.4.0-Perl-5.26.0
2.44_01 GCCcore-6.4.0-Perl-5.26.1
2.44_01 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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XZ

Version Toolchain / Variant
5.2.2 foss-2016b
5.2.2 GCCcore-4.9.3
5.2.2 intel-2016a
5.2.3 foss-2017b
5.2.3 GCCcore-6.4.0
5.2.3 intel-2016a
5.2.4 GCCcore-7.3.0
5.2.4 GCCcore-8.2.0
5.2.4 intel-2016a (Current Default Version)
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YAXT

Version Toolchain / Variant
0.4.4 intel-2016a
Back to the list

Yasm

Version Toolchain / Variant
1.3.0 GCC-4.9.3-2.25
1.3.0 GCCcore-6.4.0
1.3.0 intel-2016a (Current Default Version)
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ZeroMQ

Version Toolchain / Variant
3.2.2 goolf-1.4.10
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aTRAM

Version Toolchain / Variant
2.2 foss-2018b
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ant

Version Toolchain / Variant
1.9.6 Java-1.8.0_91
1.9.7 Java-1.8.0_92
1.10.1 Java-1.8.0_191 (Current Default Version)
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basemap

Version Toolchain / Variant
1.0.7 intel-2016a-Python-2.7.11
1.0.7 intel-2016a-Python-2.7.12
1.2.0 foss-2018b-Python-3.6.6 (Current Default Version)
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bcl2fastq2

Version Toolchain / Variant
2.20.0 foss-2018b
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beagle-lib

Version Toolchain / Variant
3.0.2 foss-2017b
3.0.2 foss-2018a (Current Default Version)
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binutils

Version Toolchain / Variant
2.25 GCC-4.9.3-binutils-2.25
2.25 GCCcore-4.9.3
2.25  
2.26 GCCcore-5.4.0
2.26  
2.28 foss-2016b
2.28 foss-2017b
2.28 GCCcore-6.4.0
2.28  
2.29 GCCcore-7.2.0
2.29 intel-2016a
2.29  
2.30 foss-2018a
2.30 GCCcore-7.3.0
2.30 intel-2016a
2.30  
2.31.1 GCCcore-8.2.0
2.31.1 (Current Default Version)
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biodeps

Version Toolchain / Variant
1.6 goolf-1.4.10
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btrim64

Version Toolchain / Variant
0.3.0  
Back to the list

bzip2

Version Toolchain / Variant
1.0.6 foss-2016a
1.0.6 foss-2016b
1.0.6 foss-2017b
1.0.6 GCC-4.9.3-2.25
1.0.6 GCCcore-6.4.0
1.0.6 GCCcore-7.3.0
1.0.6 GCCcore-8.2.0
1.0.6 goolf-1.4.10
1.0.6 intel-2015b
1.0.6 intel-2016a (Current Default Version)
Back to the list

cURL

Version Toolchain / Variant
7.43.0 intel-2015b
7.43.0 intel-2016a
7.45.0 intel-2015b
7.47.0 foss-2016a
7.47.0 intel-2016a
7.47.0 iompi-2015.03
7.49.1 foss-2016b
7.49.1 intel-2016a (Current Default Version)
7.55.1 GCCcore-6.4.0
7.56.0 GCCcore-6.4.0
7.58.0 foss-2017b
7.58.0 GCCcore-6.4.0
7.58.0 iomkl-2018a
7.60.0 GCCcore-7.3.0
7.60.0 intel-2016a
7.63.0 GCCcore-8.2.0
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cafe

Version Toolchain / Variant
3.1 intel-2016a
Back to the list

cairo

Version Toolchain / Variant
1.14.2 intel-2016a
1.14.6 foss-2016b
1.14.6 GCC-4.9.3-2.25-GLib-2.48.0
1.14.6 intel-2016a-GLib-2.48.0
1.14.8 foss-2017b
1.14.12 GCCcore-6.4.0
1.14.12 GCCcore-7.3.0 (Current Default Version)
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canu

Version Toolchain / Variant
1.8 foss-2017b-Perl-5.26.0
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ccp4

Version Toolchain / Variant
7.0.075  
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cftime

Version Toolchain / Variant
1.0.0b1 foss-2016b-Python-2.7.12
1.0.1 foss-2018b-Python-2.7.15 (Current Default Version)
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cuDNN

Version Toolchain / Variant
5.0 CUDA-7.5.18
5.0 CUDA-8.0
5.1 CUDA-8.0
5.1 intel-2016a-CUDA-8.0.44
7.5.0.56 CUDA-9.2.88 (Current Default Version)
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cutadapt

Version Toolchain / Variant
1.5 intel-2016a-Python-2.7.10
1.11 intel-2016a-Python-2.7.10 (Current Default Version)
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damageproto

Version Toolchain / Variant
1.2.1 GCC-4.9.3-2.25
Back to the list

dill

Version Toolchain / Variant
0.2.9 foss-2016b
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dri2proto

Version Toolchain / Variant
2.8 GCC-4.9.3-2.25
Back to the list

dri3proto

Version Toolchain / Variant
1.0 GCC-4.9.3-2.25
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ecCodes

Version Toolchain / Variant
2.8.2 foss-2017b
Back to the list

eccodes

Version Toolchain / Variant
2.1.0 foss-2016a
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eudev

Version Toolchain / Variant
3.1.5 GCC-4.9.3-2.25
3.1.5 intel-2016a (Current Default Version)
Back to the list

expat

Version Toolchain / Variant
2.1.0 foss-2016a
2.1.0 goolf-1.4.10
2.1.0 intel-2015b
2.1.0 intel-2016a
2.1.1 GCC-4.9.3-2.25
2.1.1 intel-2016a
2.2.0 foss-2016b
2.2.0 intel-2016a
2.2.4 GCCcore-6.4.0
2.2.5 foss-2017b
2.2.5 GCCcore-6.4.0
2.2.5 GCCcore-7.3.0 (Current Default Version)
Back to the list

file

Version Toolchain / Variant
5.33 GCCcore-6.4.0
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fixesproto

Version Toolchain / Variant
5.0 GCC-4.9.3-2.25
5.0 intel-2016a (Current Default Version)
Back to the list

flex

Version Toolchain / Variant
2.5.37 goolf-1.4.10
2.5.39 GCC-4.9.3-binutils-2.25
2.5.39 GCCcore-4.9.3
2.5.39 intel-2015b
2.5.39 intel-2016a
2.5.39  
2.6.0 foss-2016b
2.6.0 GCC-4.9.3-2.25
2.6.0 GCCcore-5.4.0
2.6.0 intel-2016a
2.6.0 iompi-2015.03
2.6.0  
2.6.3  
2.6.4 foss-2016b
2.6.4 foss-2017b
2.6.4 GCCcore-6.4.0
2.6.4 GCCcore-7.2.0
2.6.4 GCCcore-7.3.0
2.6.4 GCCcore-8.2.0
2.6.4 intel-2016a
2.6.4 intel-2018a
2.6.4 (Current Default Version)
Back to the list

flowPsi

Version Toolchain / Variant
rel 1-0-beta-3-intel-2016a
rel 1-beta-6-intel-2016a (Current Default Version)
Back to the list

fontconfig

Version Toolchain / Variant
2.11.94 intel-2016a
2.11.95 GCC-4.9.3-2.25
2.11.95 intel-2016a
2.12.1 foss-2016b
2.12.1 foss-2017b
2.12.1 intel-2016a
2.12.4 GCCcore-6.4.0
2.12.6 GCCcore-6.4.0
2.13.0 GCCcore-7.3.0 (Current Default Version)
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fontsproto

Version Toolchain / Variant
2.1.3 GCC-4.9.3-2.25
2.1.3 intel-2016a (Current Default Version)
Back to the list

foss

Version Toolchain / Variant
2016a  
2016b  
2017b  
2018a  
2018b (Current Default Version)
Back to the list

fosscuda

Version Toolchain / Variant
2019a  
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freeglut

Version Toolchain / Variant
3.0.0 GCC-4.9.3-2.25
Back to the list

freetype

Version Toolchain / Variant
2.4.10 goolf-1.4.10
2.6 intel-2016a
2.6.1 intel-2016a
2.6.2 GCC-4.9.3-2.25
2.6.2 intel-2016a
2.6.3 GCC-4.9.3-2.25
2.6.3 intel-2016a
2.6.5 foss-2016b
2.6.5 intel-2016a
2.7 foss-2016b
2.7 intel-2016a
2.7.1 foss-2017b-libpng-1.6.29
2.7.1 foss-2017b
2.8 GCCcore-6.4.0
2.9 GCCcore-6.4.0
2.9.1 GCCcore-7.3.0 (Current Default Version)
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g2lib

Version Toolchain / Variant
3.1.0 intel-2018a
Back to the list

gcccuda

Version Toolchain / Variant
2.6.10  
2018a  
2019a (Current Default Version)
Back to the list

gettext

Version Toolchain / Variant
0.19.2 intel-2016a
0.19.6 foss-2016b
0.19.7 foss-2016a
0.19.7 GCC-4.9.3-2.25
0.19.7 intel-2016a
0.19.8 foss-2016b
0.19.8 intel-2016a
0.19.8  
0.19.8.1 foss-2017b-libxml2-2.9.7
0.19.8.1 GCCcore-6.4.0-libxml2-2.9.7
0.19.8.1 GCCcore-6.4.0
0.19.8.1 GCCcore-7.3.0
0.19.8.1 (Current Default Version)
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gflags

Version Toolchain / Variant
2.1.2 GCC-4.9.3-2.25
Back to the list

git

Version Toolchain / Variant
2.8.0 foss-2016a
2.18.0 GCCcore-7.3.0 (Current Default Version)
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glog

Version Toolchain / Variant
0.3.4 GCC-4.9.3-2.25
Back to the list

glproto

Version Toolchain / Variant
1.4.17 GCC-4.9.3-2.25
1.4.17 intel-2016a (Current Default Version)
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gnuplot

Version Toolchain / Variant
5.2.2 foss-2017b
Back to the list

gompi

Version Toolchain / Variant
1.1.0 no-OFED
1.4.10  
1.5.12  
1.5.14  
2016a  
2016b  
2017b  
2018a  
2018b (Current Default Version)
Back to the list

gompic

Version Toolchain / Variant
2018a  
2019a (Current Default Version)
Back to the list

goolf

Version Toolchain / Variant
1.4.10  
Back to the list

goolfc

Version Toolchain / Variant
2018a  
Back to the list

gperf

Version Toolchain / Variant
3.0.4 GCC-4.9.3-2.25
3.0.4 intel-2016a
3.1 foss-2017b
3.1 GCCcore-6.4.0
3.1 GCCcore-7.3.0 (Current Default Version)
Back to the list

grib_api

Version Toolchain / Variant
1.17.0 intel-2016a
Back to the list

gzip

Version Toolchain / Variant
1.5 goolf-1.4.10
1.6 foss-2016b
1.6 intel-2016a (Current Default Version)
Back to the list

h5py

Version Toolchain / Variant
2.5.0 intel-2016a-Python-2.7.10-HDF5-1.8.16
2.6.0 intel-2016a-Python-2.7.12
2.7.0 intel-2016a-Python-2.7.12
2.7.1 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

help2man

Version Toolchain / Variant
1.47.4 foss-2017b
1.47.4 GCCcore-5.4.0
1.47.4 GCCcore-6.4.0
1.47.4 GCCcore-7.2.0
1.47.4 GCCcore-7.3.0
1.47.4 intel-2016a
1.47.4  
1.47.7 GCCcore-8.2.0
1.47.10 intel-2018a (Current Default Version)
Back to the list

hwloc

Version Toolchain / Variant
1.6.2 GCC-4.7.2
1.8.1 GCC-4.8.2
1.11.0 GNU-4.9.3-2.25
1.11.1 iccifort-2015.3.187-GNU-4.9.3-2.25
1.11.2 GCC-4.9.3-2.25
1.11.3 GCC-5.4.0-2.26
1.11.3 iccifort-2016.3.210-GCC-5.4.0-2.26
1.11.5 GCC-6.4.0-2.28
1.11.5 intel-2016a
1.11.7 GCCcore-6.4.0
1.11.8 GCCcore-6.4.0
1.11.8 iccifort-2018.1.163-GCC-6.4.0-2.28
1.11.10 GCCcore-7.3.0
1.11.11 GCCcore-8.2.0 (Current Default Version)
Back to the list

icc

Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2015.3.187  
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
Back to the list

iccifort

Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2015.3.187  
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
Back to the list

ictce

Version Toolchain / Variant
7.3.5  
Back to the list

ifort

Version Toolchain / Variant
2015.3.187 GNU-4.9.3-2.25
2016.1.150 GCC-4.9.3-2.25
2016.3.210 GCC-5.4.0-2.26 (Current Default Version)
2018.1.163 GCC-6.4.0-2.28
Back to the list

iimpi

Version Toolchain / Variant
7.3.5 GNU-4.9.3-2.25
7.3.5  
8.1.5 GCC-4.9.3-2.25 (Current Default Version)
2018a  
Back to the list

imkl

Version Toolchain / Variant
11.2.3.187 iimpi-7.3.5-GNU-4.9.3-2.25
11.2.3.187 iimpi-7.3.5
11.2.3.187 iompi-2015.03
11.3.1.150 iimpi-8.1.5-GCC-4.9.3-2.25 (Current Default Version)
2018.1.163 iimpi-2018a
2018.1.163 iompi-2018a
Back to the list

impi

Version Toolchain / Variant
5.0.3.048 iccifort-2015.3.187-GNU-4.9.3-2.25
5.0.3.048 iccifort-2015.3.187
5.1.2.150 iccifort-2016.1.150-GCC-4.9.3-2.25 (Current Default Version)
2018.1.163 iccifort-2018.1.163-GCC-6.4.0-2.28
Back to the list

inputproto

Version Toolchain / Variant
2.3.1 foss-2016b
2.3.1 GCC-4.9.3-2.25
2.3.1 intel-2016a (Current Default Version)
Back to the list

intel

Version Toolchain / Variant
2015b  
2016a (Current Default Version)
2018a  
Back to the list

intltool

Version Toolchain / Variant
0.51.0 foss-2017b-Perl-5.26.0
0.51.0 GCCcore-6.4.0-Perl-5.26.0
0.51.0 GCCcore-6.4.0-Perl-5.26.1
0.51.0 GCCcore-7.3.0-Perl-5.28.0 (Current Default Version)
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iomkl

Version Toolchain / Variant
2018a  
Back to the list

iompi

Version Toolchain / Variant
2015.03  
2016.07 (Current Default Version)
2018a  
Back to the list

jenkins

Version Toolchain / Variant
2.164.1 Java-1.8.0_191
Back to the list

kbproto

Version Toolchain / Variant
1.0.7 foss-2016b
1.0.7 GCC-4.9.3-2.25
1.0.7 intel-2016a (Current Default Version)
Back to the list

libGLU

Version Toolchain / Variant
9.0.0 foss-2016b
9.0.0 foss-2017b
9.0.0 foss-2018a
9.0.0 foss-2018b
9.0.0 intel-2016a-Mesa-11.2.1
9.0.0 intel-2016a (Current Default Version)
Back to the list

libICE

Version Toolchain / Variant
1.0.9 foss-2016b
1.0.9 intel-2016a (Current Default Version)
Back to the list

libSM

Version Toolchain / Variant
1.2.2 foss-2016b
1.2.2 intel-2016a (Current Default Version)
Back to the list

libX11

Version Toolchain / Variant
1.6.3 foss-2016b
1.6.3 GCC-4.9.3-2.25
1.6.3 intel-2016a (Current Default Version)
Back to the list

libXau

Version Toolchain / Variant
1.0.8 foss-2016b
1.0.8 GCC-4.9.3-2.25
1.0.8 intel-2016a (Current Default Version)
Back to the list

libXaw

Version Toolchain / Variant
1.0.12 foss-2016b
Back to the list

libXcursor

Version Toolchain / Variant
1.1.14 intel-2016a
Back to the list

libXdamage

Version Toolchain / Variant
1.1.4 GCC-4.9.3-2.25
1.1.4 intel-2016a (Current Default Version)
Back to the list

libXdmcp

Version Toolchain / Variant
1.1.2 foss-2016b
1.1.2 GCC-4.9.3-2.25
1.1.2 intel-2016a (Current Default Version)
Back to the list

libXext

Version Toolchain / Variant
1.3.3 GCC-4.9.3-2.25
1.3.3 intel-2016a (Current Default Version)
Back to the list

libXfixes

Version Toolchain / Variant
5.0.1 GCC-4.9.3-2.25
5.0.1 intel-2016a (Current Default Version)
Back to the list

libXfont

Version Toolchain / Variant
1.5.1 GCC-4.9.3-2.25
1.5.1 intel-2016a-freetype-2.6.3 (Current Default Version)
Back to the list

libXft

Version Toolchain / Variant
2.3.2 intel-2016a
Back to the list

libXi

Version Toolchain / Variant
1.7.6 GCC-4.9.3-2.25
Back to the list

libXinerama

Version Toolchain / Variant
1.1.3 intel-2016a
Back to the list

libXmu

Version Toolchain / Variant
1.1.2 foss-2016b
Back to the list

libXpm

Version Toolchain / Variant
3.5.11 foss-2016b
Back to the list

libXrandr

Version Toolchain / Variant
1.5.0 GCC-4.9.3-2.25
Back to the list

libXrender

Version Toolchain / Variant
0.9.9 GCC-4.9.3-2.25
0.9.9 intel-2016a (Current Default Version)
Back to the list

libXt

Version Toolchain / Variant
1.1.5 foss-2016b
1.1.5 intel-2016a (Current Default Version)
Back to the list

libcerf

Version Toolchain / Variant
1.5 GCCcore-6.4.0
Back to the list

libdap

Version Toolchain / Variant
3.14.0 intel-2015b-Python-2.7.10
3.19.1 intel-2018a (Current Default Version)
Back to the list

libdrm

Version Toolchain / Variant
2.4.67 GCC-4.9.3-2.25
2.4.68 intel-2016a
2.4.70 foss-2016b
2.4.70 intel-2016a
2.4.88 foss-2017b
2.4.88 GCCcore-6.4.0
2.4.91 GCCcore-6.4.0
2.4.92 GCCcore-7.3.0 (Current Default Version)
Back to the list

libffi

Version Toolchain / Variant
3.1 intel-2016a (Current Default Version)
3.2.1 foss-2016b
3.2.1 foss-2017b
3.2.1 GCC-4.9.3-2.25
3.2.1 GCCcore-6.4.0
3.2.1 GCCcore-7.3.0
3.2.1 intel-2016a
3.2.1 intel-2018a
Back to the list

libfontenc

Version Toolchain / Variant
1.1.3 GCC-4.9.3-2.25
1.1.3 intel-2016a (Current Default Version)
Back to the list

libgd

Version Toolchain / Variant
2.2.3 foss-2016b
2.2.4 GCCcore-6.4.0
2.2.5 GCCcore-7.3.0 (Current Default Version)
Back to the list

libgeotiff

Version Toolchain / Variant
1.4.2 foss-2018b
Back to the list

libgtextutils

Version Toolchain / Variant
0.6.1 goolf-1.4.10
Back to the list

libharu

Version Toolchain / Variant
2.3.0 foss-2018b
Back to the list

libjpeg-turbo

Version Toolchain / Variant
1.3.1 intel-2016a
1.4.2 GCC-4.9.3-2.25-NASM-2.12.01
1.4.2 intel-2016a-NASM-2.12.01
1.4.2 intel-2016a
1.5.0 foss-2016b
1.5.0 intel-2016a (Current Default Version)
1.5.2 foss-2017b
1.5.2 GCCcore-6.4.0
1.5.3 foss-2017b
1.5.3 GCCcore-6.4.0
2.0.0 GCCcore-7.3.0
Back to the list

libmatheval

Version Toolchain / Variant
1.1.11 intel-2018a
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libpciaccess

Version Toolchain / Variant
0.13.4 GCC-4.9.3-2.25
0.13.4 intel-2016a
0.14 GCCcore-7.3.0
0.14 GCCcore-8.2.0 (Current Default Version)
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libpng

Version Toolchain / Variant
1.5.13 goolf-1.4.10
1.6.2 goolf-1.4.10
1.6.6 goolf-1.4.10
1.6.17 intel-2016a
1.6.18 intel-2016a
1.6.21 GCC-4.9.3-2.25
1.6.21 intel-2016a
1.6.23 foss-2016b
1.6.23 intel-2016a
1.6.24 foss-2016b
1.6.24 intel-2016a
1.6.26 foss-2016b
1.6.26 intel-2016a
1.6.29 foss-2017b
1.6.32 GCCcore-6.4.0
1.6.34 GCCcore-6.4.0
1.6.34 GCCcore-7.3.0 (Current Default Version)
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libpthread-stubs

Version Toolchain / Variant
0.3 foss-2016b
0.3 GCC-4.9.3-2.25
0.3 intel-2016a (Current Default Version)
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libreadline

Version Toolchain / Variant
6.2 goolf-1.4.10
6.3 foss-2016a
6.3 foss-2016b
6.3 foss-2018a
6.3 GCC-4.9.3-2.25
6.3 GCCcore-4.9.3
6.3 intel-2015b
6.3 intel-2016a
6.3 intel-2018a
7.0 foss-2017b
7.0 GCCcore-6.4.0
7.0 GCCcore-7.3.0
7.0 intel-2016a (Current Default Version)
Back to the list

libsbml

Version Toolchain / Variant
5.15.0 intel-2016a-Python-2.7.11
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libsndfile

Version Toolchain / Variant
1.0.28 GCCcore-7.3.0
Back to the list

libtool

Version Toolchain / Variant
2.4.2 goolf-1.4.10
2.4.6 foss-2016a
2.4.6 foss-2016b
2.4.6 foss-2017b
2.4.6 GCC-4.9.2
2.4.6 GCC-4.9.3-2.25
2.4.6 GCCcore-4.9.3
2.4.6 GCCcore-6.4.0
2.4.6 GCCcore-7.3.0
2.4.6 GCCcore-8.2.0
2.4.6 GNU-4.9.3-2.25
2.4.6 intel-2016a (Current Default Version)
2.4.6 intel-2018a
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libunistring

Version Toolchain / Variant
0.9.6 intel-2018a
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libunwind

Version Toolchain / Variant
1.2.1 GCCcore-7.3.0
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libxc

Version Toolchain / Variant
4.2.3 intel-2018a
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libxcb

Version Toolchain / Variant
1.11.1 foss-2016b
1.11.1 GCC-4.9.3-2.25
1.11.1 intel-2016a (Current Default Version)
Back to the list

libxml2

Version Toolchain / Variant
2.9.2 intel-2016a
2.9.3 foss-2016a
2.9.3 GCC-4.9.3-2.25
2.9.3 intel-2015b-Python-2.7.10
2.9.3 intel-2016a
2.9.4 foss-2016b-Python-2.7.12
2.9.4 foss-2016b
2.9.4 GCCcore-4.9.3
2.9.4 GCCcore-6.4.0
2.9.4 intel-2016a-Python-2.7.12
2.9.4 intel-2016a
2.9.7 foss-2017b
2.9.7 GCCcore-6.4.0
2.9.8 GCCcore-7.3.0
2.9.8 GCCcore-8.2.0 (Current Default Version)
Back to the list

libxsmm

Version Toolchain / Variant
1.8.3 intel-2018a
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libyaml

Version Toolchain / Variant
0.1.7 GCCcore-6.4.0
0.1.7 (Current Default Version)
Back to the list

lpsolve

Version Toolchain / Variant
5.5.2.5 foss-2018b
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makedepend

Version Toolchain / Variant
1.0.5 GCC-4.9.3-2.25
1.0.5 intel-2016a (Current Default Version)
Back to the list

matplotlib

Version Toolchain / Variant
1.1.1 goolf-1.4.10-Python-2.7.3
1.5.0 intel-2016a-Python-2.7.10
1.5.0 intel-2016a-Python-2.7.11
1.5.1 intel-2016a-Python-2.7.11
1.5.1 intel-2016a-Python-2.7.12
1.5.1 intel-2016a-Python-3.6.3
1.5.3 intel-2016a-Python-3.5.1
2.0.0 foss-2016b-Python-2.7.12
2.1.2 foss-2018a-Python-3.6.4
2.2.3 foss-2018b-Python-2.7.15
3.0.0 foss-2018b-Python-3.6.6 (Current Default Version)
Back to the list

minimap2

Version Toolchain / Variant
2.13 foss-2017b
Back to the list

mkl-dnn

Version Toolchain / Variant
0.16 intel-2016a
Back to the list

molecularGSM

Version Toolchain / Variant
0.0.1 intel-2016a
Back to the list

mpi4py

Version Toolchain / Variant
1.3.1 intel-2015b-Python-2.7.10-timed-pingpong
1.3.1 intel-2015b-Python-2.7.10 (Current Default Version)
1.3.1 intel-2016a-Python-2.7.10
3.0.0 intel-2016a-Python-3.6.3
Back to the list

mpiBLAST

Version Toolchain / Variant
1.6.0 goolf-1.4.10
Back to the list

mpmath

Version Toolchain / Variant
0.19 foss-2016b-Python-2.7.12
Back to the list

myHadoop

Version Toolchain / Variant
1.26.18  
Back to the list

ncbi-vdb

Version Toolchain / Variant
2.9.1 1-foss-2017b
Back to the list

ncurses

Version Toolchain / Variant
5.9 GCC-4.9.3-2.25
5.9 GNU-4.9.3-2.25
5.9 goolf-1.4.10
5.9 intel-2015b
5.9 intel-2016a
5.9 iompi-2015.03
6.0 foss-2016a
6.0 foss-2016b
6.0 foss-2017b
6.0 GCC-4.9.3-2.25
6.0 GCCcore-4.9.3
6.0 GCCcore-6.4.0
6.0 intel-2016a
6.0 iompi-2015.03
6.0 (Current Default Version)
6.1 GCCcore-6.4.0
6.1 GCCcore-7.3.0
6.1 GCCcore-8.2.0
6.1 intel-2016a
6.1 intel-2018a
Back to the list

ncview

Version Toolchain / Variant
2.1.2 goolf-1.4.10
Back to the list

netCDF

Version Toolchain / Variant
4.2.1.1 goolf-1.4.10
4.3.2 intel-2015b
4.3.2 intel-2016a
4.3.3.1 intel-2015b
4.3.3.1 intel-2016a
4.4.0 intel-2016a
4.4.0 iompi-2015.03
4.4.1 foss-2016b
4.4.1 intel-2016a
4.4.1 iompi-2015.03 (Current Default Version)
4.4.1.1 intel-2018a-HDF5-1.8.19
4.5.0 foss-2017b
4.5.0 iomkl-2018a
4.6.0 foss-2017b-disabled
4.6.0 foss-2017b
4.6.1 foss-2018b
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netCDF-C++4

Version Toolchain / Variant
4.3.0 foss-2018b
Back to the list

netCDF-Fortran

Version Toolchain / Variant
4.2 goolf-1.4.10
4.4.2 intel-2015b
4.4.3 intel-2016a
4.4.4 foss-2018b
4.4.4 intel-2016a
4.4.4 iomkl-2018a
4.4.4 iompi-2015.03 (Current Default Version)
Back to the list

netcdf4-python

Version Toolchain / Variant
1.1.8 intel-2015b-Python-2.7.10
1.2.4 intel-2016a-Python-3.5.1
1.4.0 foss-2016b-Python-2.7.12
1.4.3 foss-2018b-Python-2.7.15 (Current Default Version)
Back to the list

nettle

Version Toolchain / Variant
3.2 foss-2016b
3.2 intel-2016a
3.3 foss-2017b
3.3 GCCcore-6.4.0
3.4 foss-2018a
3.4 foss-2018b (Current Default Version)
Back to the list

numactl

Version Toolchain / Variant
2.0.10 GNU-4.9.3-2.25
2.0.10 iccifort-2015.3.187-GNU-4.9.3-2.25
2.0.11 GCC-4.9.3-2.25
2.0.11 GCC-5.4.0-2.26
2.0.11 GCCcore-6.4.0
2.0.11 GCCcore-7.3.0
2.0.11 iccifort-2016.3.210-GCC-5.4.0-2.26
2.0.11 iccifort-2018.1.163-GCC-6.4.0-2.28
2.0.11 intel-2016a (Current Default Version)
2.0.12 GCCcore-8.2.0
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numpy

Version Toolchain / Variant
1.6.2 goolf-1.4.10-Python-2.7.3
1.7.1 goolf-1.4.10-Python-2.7.3
1.8.2 intel-2016a-Python-2.7.11
1.10.4 intel-2015b-Python-2.7.10
1.10.4 intel-2016a-Python-2.7.10
1.10.4 intel-2016a-Python-2.7.11
1.10.4 intel-2016a-Python-3.5.1
1.11.0 intel-2016a-Python-2.7.12
1.11.2 foss-2016b-Python-2.7.12
1.11.2 intel-2016a-Python-3.5.1
1.13.1 foss-2018b-Python-2.7.15
1.13.1 intel-2016a-Python-2.7.11
1.13.1 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

p3dfft

Version Toolchain / Variant
2.7.5 intel-2016a
Back to the list

packmol

Version Toolchain / Variant
16.161 intel-2016a
Back to the list

pandas

Version Toolchain / Variant
0.11.0 goolf-1.4.10-Python-2.7.3
0.18.1 intel-2016a-Python-2.7.12
0.21.0 foss-2018a-Python-3.6.4 (Current Default Version)
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parallel

Version Toolchain / Variant
20190222 GCCcore-7.3.0
Back to the list

parallel-netcdf

Version Toolchain / Variant
1.8.1 intel-2016a
Back to the list

picard

Version Toolchain / Variant
2.5.0 Java-1.8.0_91
2.18.27 Java-1.8.0_191 (Current Default Version)
Back to the list

pip

Version Toolchain / Variant
8.1.2 GCC-4.9.3-2.25-Python-2.7.10
8.1.2 intel-2016a-Python-2.7.10
8.1.2 intel-2016a-Python-2.7.11
9.0.1 intel-2016a-Python-2.7.10
9.0.1 intel-2016a-Python-2.7.11
9.0.1 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

pixman

Version Toolchain / Variant
0.32.6 intel-2016a
0.34.0 foss-2016b
0.34.0 foss-2017b
0.34.0 GCC-4.9.3-2.25
0.34.0 GCCcore-6.4.0
0.34.0 GCCcore-7.3.0
0.34.0 intel-2016a (Current Default Version)
Back to the list

pkg-config

Version Toolchain / Variant
0.29 foss-2016b
0.29 GCC-4.9.3-2.25
0.29 intel-2016a
0.29.1 foss-2016b
0.29.1 intel-2016a
0.29.1 intel-2018a
0.29.2 foss-2017b
0.29.2 GCCcore-6.4.0
0.29.2 GCCcore-7.3.0
0.29.2 intel-2016a (Current Default Version)
Back to the list

pkgconfig

Version Toolchain / Variant
1.1.0 intel-2016a-Python-2.7.10
1.2.2 intel-2016a-Python-2.7.12
1.3.1 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

popt

Version Toolchain / Variant
1.16 foss-2016b
Back to the list

pplacer

Version Toolchain / Variant
1.1.alpha19  
Back to the list

prodigal

Version Toolchain / Variant
2.6.3 GCCcore-7.3.0
Back to the list

prokka

Version Toolchain / Variant
1.11 foss-2016b-BioPerl-1.7.0
Back to the list

protobuf

Version Toolchain / Variant
2.5.0  
3.1.0 GCC-4.9.3-2.25
3.1.0 intel-2016a
3.1.0 Python-2.7.10
3.2.0 intel-2016a (Current Default Version)
Back to the list

protobuf-python

Version Toolchain / Variant
3.1.0 intel-2016a-Python-2.7.11
3.2.0 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

pullseq

Version Toolchain / Variant
1.0.2 GCCcore-7.3.0
Back to the list

pygrib

Version Toolchain / Variant
2.0.2rel intel-2016a-Python-2.7.12
Back to the list

pypar

Version Toolchain / Variant
2.0 foss-2016b
Back to the list

rDock

Version Toolchain / Variant
2013.1 foss-2016b
Back to the list

randrproto

Version Toolchain / Variant
1.5.0 GCC-4.9.3-2.25
Back to the list

regex

Version Toolchain / Variant
2016.08.27 intel-2016a-Python-2.7.10
Back to the list

renderproto

Version Toolchain / Variant
0.11 GCC-4.9.3-2.25
0.11 intel-2016a (Current Default Version)
Back to the list

scikit-learn

Version Toolchain / Variant
0.17.1 intel-2016a-Python-2.7.10
0.17.1 intel-2016a-Python-2.7.12
0.19.1 foss-2018a-Python-3.6.4
0.19.1 intel-2016a-Python-2.7.12
0.20.2 foss-2018b-Python-2.7.15 (Current Default Version)
Back to the list

scipy

Version Toolchain / Variant
0.13.0 goolf-1.4.10-Python-2.7.3
0.16.1 intel-2015b-Python-2.7.10
0.17.0 foss-2016b-Python-2.7.12
0.17.0 foss-2018b-Python-2.7.15
0.17.0 intel-2016a-Python-2.7.12 (Current Default Version)
Back to the list

shelx

Version Toolchain / Variant
20181226T1934  
Back to the list

snappy

Version Toolchain / Variant
1.1.3 GCC-4.9.3-2.25
Back to the list

spark-corenlp

Version Toolchain / Variant
0.3.1 s_2.11
Back to the list

spglib

Version Toolchain / Variant
1.9.9 intel-2016a
Back to the list

sympy

Version Toolchain / Variant
1.0 foss-2016b-Python-2.7.12
Back to the list

tabix

Version Toolchain / Variant
0.2.6 GCCcore-7.3.0
0.2.6 intel-2016a (Current Default Version)
Back to the list

tbb

Version Toolchain / Variant
2018_U5 GCCcore-6.4.0
2018_U5 GCCcore-7.3.0 (Current Default Version)
Back to the list

tcsh

Version Toolchain / Variant
6.19.00 intel-2016a
6.19.00 iompi-2015.03 (Current Default Version)
Back to the list

unixODBC

Version Toolchain / Variant
2.3.7 foss-2016b
2.3.7 intel-2016a
2.3.7 (Current Default Version)
Back to the list

util-linux

Version Toolchain / Variant
2.22.2 goolf-1.4.10
2.31 GCCcore-6.4.0
2.31.1 foss-2017b
2.31.1 GCCcore-6.4.0
2.32 GCCcore-7.3.0 (Current Default Version)
Back to the list

vmd

Version Toolchain / Variant
1.9.2 intel-2016a
Back to the list

wheel

Version Toolchain / Variant
0.30.0 intel-2016a-Python-2.7.12
0.30.0 intel-2018a-Python-3.6.4
0.31.0 foss-2018a-Python-3.6.4 (Current Default Version)
Back to the list

wtdbg2

Version Toolchain / Variant
2.3 foss-2018b
Back to the list

wxWidgets

Version Toolchain / Variant
3.0.3 foss-2017b
Back to the list

x264

Version Toolchain / Variant
20160430 GCC-4.9.3-2.25
20160430 intel-2016a
20180128 GCCcore-6.4.0 (Current Default Version)
Back to the list

x265

Version Toolchain / Variant
2.6 GCCcore-6.4.0
Back to the list

xcb-proto

Version Toolchain / Variant
1.11  
Back to the list

xextproto

Version Toolchain / Variant
7.3.0 foss-2016b
7.3.0 GCC-4.9.3-2.25
7.3.0 intel-2016a (Current Default Version)
Back to the list

xineramaproto

Version Toolchain / Variant
1.2.1 intel-2016a
Back to the list

xorg-macros

Version Toolchain / Variant
1.19.0 foss-2016b
1.19.0 GCC-4.9.3-2.25
1.19.0 intel-2016a
1.19.2 GCCcore-7.3.0
1.19.2 GCCcore-8.2.0 (Current Default Version)
Back to the list

xprop

Version Toolchain / Variant
1.2.2 GCCcore-6.4.0
1.2.2 intel-2016a (Current Default Version)
Back to the list

xproto

Version Toolchain / Variant
7.0.28 foss-2016b
7.0.28 GCC-4.9.3-2.25
7.0.28 intel-2016a (Current Default Version)
   
Back to the list

xtrans

Version Toolchain / Variant
1.3.5 foss-2016b
1.3.5 GCC-4.9.3-2.25
1.3.5 intel-2016a (Current Default Version)
Back to the list

zlib

Version Toolchain / Variant
1.2.5 goolf-1.4.10
1.2.7 goolf-1.4.10
1.2.8 foss-2016a
1.2.8 foss-2016b
1.2.8 foss-2017b
1.2.8 GCC-4.9.3-binutils-2.25
1.2.8 GCC-4.9.3-2.25
1.2.8 GCCcore-4.9.3
1.2.8 GCCcore-5.4.0
1.2.8 goolf-1.4.10
1.2.8 intel-2015b
1.2.8 intel-2016a
1.2.8 iompi-2015.03
1.2.8  
1.2.11 foss-2017b
1.2.11 GCCcore-5.4.0
1.2.11 GCCcore-6.4.0
1.2.11 GCCcore-7.2.0
1.2.11 GCCcore-7.3.0
1.2.11 GCCcore-8.2.0
1.2.11 intel-2016a
1.2.11 intel-2018a
1.2.11 iomkl-2018a
1.2.11 (Current Default Version)
Back to the list

You may request new software deployments at any time, but we highly recommend sending your request as quickly as possible. For non-commercial users, OSCER can deploy software for you free of charge.

Requests must be sent to support@oscer.ou.edu with the following information:

  • Name of the software
  • The version of the software
  • URL to download the installer package, OR, copy of the installer package
    NOTE: Software must Linux compatible and capable of running in a multi-cluster environment
  • Any other information pertinent to successfully deploying the software (compiler information, etc.)

Every effort will be made to process requests as quickly as possible. Since each software deployment is different and poses its own challenges and complexities, we are unable to provide an estimate or guarantee a turnaround time. We strongly recomend sending us your request as soon as you anticipate a possible need (rather than waiting until you actually need to use it).

You may also deploy software in your home directory, but only to the limit of your quota (20 GB in most cases). We don't recommend deploying software in your scratch directory because it'll get automatically deleted after a few weeks.

Note about Commercial Software:
Users wanting to have commercial software deployed on OSCER systems are responsible for the costs associated with licensing. OSCER does not fund commercial software. Prior to purchasing the software, please work with us to verify that the software that you want to buy is compatible with our systems and is allowed by the vendor to be deployed there.