# Scholarly Publications Facilitated by OU Research IT

__NOTE__: This list is always incomplete and out of date.

Click here for instructions on how to acknowledge use of OU Research IT resources and/or personnel in publications.

## Ongoing

High Energy Physics ATLAS Project:

OU Research IT (especially OSCER) systems have been used for reprocessing data from various experiments. All papers on these topics at this link that used collision data used OU Research IT (especially OSCER) for part of their computing.

High Energy Physics D0 Project:

OU Research IT (especially OSCER) systems have been used for reprocessing data from Run IIa, primary processing of data from Run IIa and reprocessing of data from Run IIb. All papers on these topics at this link used OU Research IT (especially OSCER) for part of their computing.

## 2017

- J. Huang, Y. Mei, G. König, A. C. Simmonett, F. C. Pickard IV, Q. Wu, L.-P. Wang, A. D. MacKerell Jr., B. R. Brooks and Y. Shao, 2017: "An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches." J. Chem. Theory Comput., 13 (2), 679–695. DOI: 10.1021/acs.jctc.6b01125
- F. Lingua, B. Capogrosso-Sansone, F. Minardi and V. Penna, 2017: "Thermometry of bosonic mixtures in Optical Lattices via Demixing." Scientific Reports, 7, article 5105. DOI: 10.1038/s41598-017-05353-6
- F. Lingua, M. Guglielmino, V. Penna and B. Capogrosso Sansone, 2015: "Demixing effects in mixtures of two bosonic species." Phys. Rev. A, 92 (5), 053610. DOI: 10.1103/PhysRevA.92.053610
- Nemunaitis-Berry, K. L., P. M. Klein, J. B. Basara, and E. Fedorovich, 2017: Sensitivity of predictions of the urban surface energy balance and heat island to variations of urban canopy parameters in simulations with the WRF Model." J. Appl. Meteor. Climatol., 56, 573-595, DOI: 10.1175/JAMC-D-16-0157.1.
- A. Safavi-Naini, B. Capogrosso-Sansone, A. Kuklov and V. Penna, 2016: "Quasi-molecular bosonic complexes -- a pathway to atomic analog of SQUID with controlled sensitivity." New J. of Phys., 18, 025017. DOI: 10.1088/1367-2630/18/2/025017

## 2016

- M. Bhavaraju, M. Phillips, D. Bowman, J. M. Aceves-Herndez and U. H. E. Hansmann, 2016: "Binding of ACE-inhibitors to In Vitro and Patient-derived Amyloid-β Fibril Models."
*J. Chem. Phys.*, 144 015101. DOI: 10.1063/1.4938261. - D. J. Bodine, T. Maruyama, R. D. Palmer, C. J. Fulton, H. Bluestein and D. C. Lewellen, "Sensitivity of tornado dynamics to soil debris loading."
*Journal of the Atmospheric Sciences*, accepted. - D. J. Bodine, R. D. Palmer, T. Maruyama, C. J. Fulton, Y. Zhu and B. L. Cheong, 2016: "Simulated frequency dependence of radar observations of tornadoes."
*Journal of Atmospheric and Oceanic Technology*, accepted. - A. D. Byrd, I. R. Ivic, R. D. Palmer, B. M. Isom, B. L. Cheong, A. D. Schenkman and M. Xue, 2016: "A Weather Radar Simulator for the Evaluation of Polarimetric Phased Array Performance."
*IEEE Trans. Geosci. and Remote Sens.*, 54 (7), 4178-4189. - S. P. Calhoun, D. Akin, B. Zimmerman and H. Neeman, 2016: "Large Scale Research Data Archiving: Training for an Inconvenient Technology."
*Journal of Computational Science*, to appear. DOI: 10.1016/j.jocs.2016.07.005. - Y. Chao, J. Sheng, J. Sedlacek and J. P. Shaffer, 2016: "Surface Phonon-Polariton Dispersion Relation Analysis on Artificial Piezoelectric Superlattice Interfaces."
*Physical Review B*, 93, 045419. - M. C. Coniglio, S. M. Hitchcock and K. H. Knopfmeier, 2016: "Impact of assimilating pre-convective upsonde observations on short-term forecasts of convection observed during MPEX."
*Mon. Wea. Rev.*. DOI: 10.1175/MWR-D-16-0091.1. - I. A. Davidova, B. Wawrik, A. V. Callaghan, K. Duncan, C. R. Marks and J. M. Suflita, 2016: "Dethiosulfoarculus diegica, strain SPR sp. nov. gen. nov., Isolated from a Methanogenic Paraffin Degrading Enrichment Culture." International Journal of Systematic and
*Evolutionary Microbiology*, in press. - D. T. Dawson II, M. Xue, A. Shapiro and J. Milbrandt, 2016: "Sensitivity of Real-Data Simulations of the 3 May 1999 Oklahoma City Tornadic Supercell and Associated Tornadoes to Multi-moment Microphysics. Part II: Analysis of Buoyancy and Dynamic Pressure Forces in Simulated Tornado-Like Vortices."
*Journal of Atmospheric Sciences*, 73, 1039-1061. DOI: 10.1175/JAS-D-15-0114.1 - P. S. Deimel, R. M. Bababrk, B. Wang, P. J. Blowey, L. A. Rochford, P. K. Thakur, T.-L. Lee, M.-L. Bocquet, J. V. Barth, D. P. Woodruff, D. A. Duncan and F. Allegretti, 2016: "Direct quantitative identification of the 'surface trans-effect'."
*Chem. Sci.*, 7, 5637-5656. - J. D. Duda, X. Wang, F. Kong, M. Xue and J. Berner, 2016: "Impact of a Stochastic Kinetic Energy Backscatter Scheme on Warm season ConvectionAllowing Ensemble Forecasts."
*Mon. Wea. Rev.*, 144 (5), 1887–1908. DOI: 10.1175/MWR-D-15-0092.1 - H. Esmaielpour, V. Whiteside, J. Tang, S. Vijeyaragunathan, T. Mishima, S. Cairns, M. B. Santos, B. Wang and I. Sellers, 2016: "Suppression of phonon-mediated hot carrier relaxation in type-II InAs/AlAsxSb1-x quantum wells: a practical route to hot carrier solar cells."
*Progress in Photovoltaics: Research and Applications*, 24, 591-599. - N. Faginas-Lago, M. Albertí and A. Lombardi, 2016: "Acetone clusters molecular dynamics using a semi-empirical intermolecular potential."
*Lecture Notes in Computer Science (Workshop on Chemistry and Molecular & Materials Sciences and Technologies)*, ICCSA 2016, Part I, LNCS 9786, 129–140. DOI: 10.1007/978-3-319-42085-1_10 - N. Faginas Lago, M. Albertí, A. Lombardi, et al., 2016: "A force field for acetone: The transition from small clusters to liquid phase investigated by molecular dynamics simulations."
*Theor Chem Acc*, 135 (161). DOI: 10.1007/s00214-016-1914-9. - N. Faginas-Lago, D. Yeni, F. Huarte, Y. Wang, M. Alcamí and F. Martin, 2016: "Adsorption of Hydrogen Molecules on Carbon Nanotubes Using Quantum Chemistry and Molecular Dynamics."
*The Journal of Physical Chemistry A*, 120 (32), 6451-6458. DOI: 10.1021/acs.jpca.5b12574. - H. Q. Fan, S. Kumar, H. Kubler, and J. P. Shaffer, 2016: "Microwave Electrometry using Rydberg Atomic Prism via Electromagnetically Induced Transparency."
*Journal of Physics B*(special issue on Rydberg Atom Physics), 49, 104004, accepted. - A. O. Fierro, J. Gao, C. Ziegler, K. Calhoun, E.R. Mansell and D. R. MacGorman, 2016: "Assimilation of flash extent data in the variational framework at convection-allowing scales: Proof-of-concept and evaluation for the short term forecast of the 24 May 2011 tornado outbreak."
*Monthly Weather Review*, in press. - A. O. Fierro and E. R. Mansell, 2016: "Electrification and lightning in idealized simulations of a hurricane-like vortex subject to wind shear and sea surface temperature cooling."
*Journal of the Atmospheric Sciences*, to be submitted. - B. Friesen, E. Baron, J. T. Parrent, R. C. Thomas, D. Branch, P. Nugent, P. H. Hauschildt, R. J. Foley, D. E. Wright, Y.-C. Pan, A. V. Filippenko, K. I. Clubb, J. M. Silverman, K. Maeda, I. Shivvers, P. L. Kelly, D. P. Cohen, A. Rest and D. Kasen, 2016: "Optical and ultraviolet spectroscopic analysis of SN 2011fe at late times." ArXiv e-prints: 2016arXiv160704784F.
- L. Galbany, M. E. Moreno-Raya, P. Ruiz-Lapuente, J. I. González Hernández, J. Méndez, P. Vallely, E. Baron, I. Domínguez, M. Hamuy, A. R. López-Sánchez, M. Mollá, S. Catalán, E. A. Cooke, C. Fariña, R. Génova-Santos, R. Karjalainen, H. Lietzen, J. McCormac, F. C. Riddick, J. a. Rubiño-Martín, I. Skillen, V. Tudor and O. Vaduvescu, 2016: "SN 2014J at M82 - I. A middle-class Type Ia supernova by all spectroscopic metrics."
*Monthly Notices of the Royal Astronomical Society*, 457 (1), 525-537. DOI: 10.1093/mnras/stw026. - J. Gao, C. Fu, D. J. Stensrud and J. S. Kain, 2016: "OSSE experiments for An Ensemble of 3DVAR Data Assimilation System with Radar Data for Convective Storms."
*J. Atmos. Sci.*, 73, 2403-2426. - T. V. Gopaladasu and K. M. Nicholas, 2016: "Carbon Monoxide (CO)- and Hydrogen-Driven, Vanadium-Catalyzed Deoxydehydration of Glycols."
*ACS Catal.*, 6, 1901−1904. - X. Gu, S.-Y. Park, M. Tonelli, G. Cornilescu, T. Xia, D. Zhong and S. J. Schroeder, 2016: "NMR Structures and Dynamics in a Prohead RNA Loop that Specifically Binds Metal Ions."
*J. Phys. Chem. Letters*, in press. - I. Guerra and S. J. Schroeder, 2016: "Crumple: An efficient tool to explore thoroughly the RNA folding landscape." In
*RNA Structure Determination*(eds. D. H. Turner & D.H. Mathews), Springer-Verlag, in press. - N. Hadad, D. R. Masser, S. Logan, B. Wronowski, C. A. Mangold, N. Clark, L. Otalora, A. Unnikrishnan, M. M. Ford, C. B. Giles, J. D. Wren, A. Richardson, W. E. Sonntag, D. R. Stanford and W. Freeman, 2016: "Absence of genomic hypomethylation or regulation of cytosine-modifying enzymes with aging in male and female mice."
*Epigenetics & Chromatin*, 9 (30). DOI: 10.1186/s13072-016-0080-6. - S. M. Hitchcock, M. C. Coniglio and K. H. Knopfmeier, 2016: "Impact of MPEX Upsonde Observations on Ensemble Analyses and Forecasts of the 31 May 2013 Convective Event over Oklahoma."
*Mon. Wea. Rev.*, 144, 2889–2913. DOI: 10.1175/MWR-D-15-0344.1. - G. R. Kasner, C. Boucher-Jacobs, J. M. McClain II and K. M. Nicholas, 2016: "Oxo-rhenium catalyzed reductive coupling and deoxygenation of alcohols."
*Chem. Commun.*, 52, 7257-726. - P. Kirstetter, T.-Y. Yu, R. D. Palmer, D. Parsons, H. Ishikawa and J. M. Erlingis, 2016: "The 4th International Symposium on Earth-science Challenges: An Integrative Research and Education Initiative to Study Severe Weather and Climate Variability."
*Bulletin of the American Meteorological Society*, accepted. - Y. L. Kogan and D. B. Mechem, 2016: "A PDF-Based Formulation of Microphysical Variability in Cumulus Congestus Clouds."
*J. Atmos. Sci.*, 73, 167-184. - J. M. Kondo, D. Booth, L. F. Gonçalves, J. P. Shaffer and L. G. Marcassa, 2016: "The role of multi-level Rydberg interaction in electric field tuned Forster resonances."
*Physical Review A*, 93, 012703. - S. Kumar, J. Sheng, J. Sedlacek, H. Q. Fan and J. P. Shaffer, 2016: "Coherent collective state synthesis in an optical cavity using Rydberg atom dipole blockade."
*Journal of Physics B*(Special Issue on Rydberg Atom Physics), 49, 064014. - J. M. Kurdzo, F. Nai, D. J. Bodine, R. D. Palmer, B. L. Cheong, J. Lujan, A. Mahre and A. D. Byrd, 2016: "Observations of Severe Local Storms and Tornadoes with the Atmospheric Imaging Radar."
*Bulletin of the American Meteorological Society*, accepted. - J. R. Lawson and W. A. Gallus Jr., 2016: "Mapping the convective watersheds: Assessing the predictability of convective evolution with idealized numerical simulations."
*The 28th Conference on Severe Local Storms*, Portland OR USA, American Meteorological Society. - H. Li, Y. Hong, P. Xie, J. Gao, Z. Niu, P.-E. Kirstetter and B. Yong, 2015: "Variational merged of hourly gauge-satellite precipitation in China: preliminary results."
*J. Geophys. Res.–Atmos.*, 120, 9897-9915. - S.-Q. Li, T. Mou, G.-F. Ren, J. Warzywoda, B. Wang and Z.-Y. Fan, 2016: "Confining sulfur species in cathodes of lithium–sulfur batteries: insight into nonpolar and polar matrix surface."
*ACS Energy Lett.*, 1, 481-489. - A. Lombardi, N. Faginas-Lago, G. Grossi, F. Palazzetti and V. Aquilanti, 2016: "Collisional energy exchange in CO2–N2 gaseous mixtures."
*Lecture Notes in Computer Science (Workshop on Chemistry and Molecular & Materials Sciences and Technologies)*, ICCSA 2016, Part I, LNCS 9786, 246-257. DOI: 10.1007/978-3-319-42085-1_19 - J. A. Lusk and E. Baron, 2016: "Bolometric Lightcurves of Peculiar Type II-P Supernovae." arXiv e-prints: 1608.08631.
- B. H. M. Mooers, 2016: "Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry."
*Acta Crystallographica Section D Structural Biology*, D72, 477-487. DOI: 10.1107/S2059798316001224. Epub 2016 Mar 24. PubMed PMID: 27050127. - C. D. Murray, B. N. Cranor, R. W. Floyd and J. S. Pei, 2016: "Shear Behavior of 45-Year-Old AASHTO Type II Bridge Girders."
*PCI Convention and National Bridge Conference 2017*, under review. - F. Nai, S. Torres and R. Palmer, 2016: "Adaptive Beamspace Processing for Phased-Array Weather Radar."
*IEEE Transactions on Geoscience and Remote Sensing*, accepted. - H. Neeman, A. Bergstrom, D. Brunson, C. Ganote, Z. Gray, B. Guilfoos, R. Kalescky, E. Lemley, B. G. Moore, S. K. Ramadugu, A. Romanella, J. Rush, A. H. Sherman, B. Stengel and D. V.ss, 2016: "The Advanced Cyberinfrastructure Research and Education Facilitators Virtual Residency: Toward a National Cyberinfrastructure Workforce."
*Proc. XSEDE'16*, paper 57. DOI: 10.1145/2949550.2949584. - K. J. Nelson, D. B. Mechem and Y. L. Kogan, 2016: "Evaluation of warm-rain microphysical parameterizations in mesoscale simulations of the cloudy marine boundary layer."
*Mon. Wea. Rev.*, accepted. - L. Pacifici, M. Pastore, E. Garcia, A. Laganà and S. Rampino, 2016: "A Dynamics Investigation of the C + CH
^{+}→ C_{2}^{+}+ H Reaction on an Ab Initio Bond-Order Like Potential."*J. Phys. Chem. A*. DOI: 10.1021/acs.jpca.6b00564. - L. Pacifici, F. Talotta, N. Balucani, N. Faginas-Lago and A. Lagana, 2016: "Modeling Combustions: The Ab Initio Treatment of the O( P) + CH OH Reaction."
*Lecture Notes in Computer Science (Workshop on Chemistry and Molecular & Materials Sciences and Technologies)*, ICCSA 2016, Part I, LNCS 9786, 71-83. DOI: 10.1007/978-3-319-42085-1_6. - N. H. Pham and D. V. Papavassiliou, 2016: "Nanoparticle transport in heterogeneous porous media with particle tracking numerical methods."
*Computational Particle Mechanics*, accepted. DOI: 10.1007/s40571-016-0130-7. - A. Phan, 2016: "Hydrogen-Bonding Liquids at Mineral Surfaces: From Fundamentals to Applications." Ph.D. dissertation (advisor A. Striolo), Department of Chemical Engineering, University College London.
- C. Phillips-Lander, S. Parnell, L. McGraw, A. Elwood Madden and M. Elwood Madden, 2016: "Carbonate mineral dissolution rates in high salinity brines: implications for carbonate preservation on Mars."
*Icarus*, submitted. - C. K. Potvin and M. L. Flora, 2015: "Sensitivity of idealized supercell simulations to horizontal grid spacing: Implications for Warn-On-Forecast."
*Mon. Wea. Rev.*, 143, 2998-3024. - C. K. Potvin, E. M. Murillo, M. L. Flora and D. M. Wheatley, 2016: "Sensitivity of supercell simulations to initial condition resolution."
*J. Atmos. Sci.*, accepted. - M. Razi, P. J. Attar and P. Vedula, 2016: "Numerical Solution of Multidimensional Hyperbolic PDEs using Defect Correction on Adaptive Grids."
*Journal of Scientific Computing*, accepted (April 2016). - A. D. Schenkman, M. Xue and D. Dawson, 2016: "The cause of internal surges in a high-resolution simulation of the 8 May 2003 Oklahoma City tornadic supercell."
*J. Atmos. Sci*, 73, 353-370. - A. D. Schenkman, M. Xue, D.T. Dawson II and M. Hu, 2016: "Internal Outflow Surges in a High-Resolution Simulation of the 8 May 2003 Oklahoma City Tornadic Supercell."
*Journal of the Atmospheric Sciences*, in press. - J.A. Sedelacek, E. Kim, S. T. Rittenhouse, P.F. Weck, H. Sadeghpour and J. P. Shaffer, 2016: "Neutralization of Surface Adsorbate Electric Fields of Rubidium by Slow Electron Attachment."
*Physical Review Letters*, 116, 133201. - M. R. Sexton, M. E. Elwood Madden, A. L. Swindle, V. E. Hamilton, B. R. Bickmore and A. S. Elwood Madden, 2016: "Considering the formation of hematite spherules on Mars by freezing aqueous hematite nanoparticle suspensions."
*Icarus*, submitted. - J. Sheng, Y. Chao and J. P. Shaffer, 2016: "Strong Coupling of Rydberg Atoms and Surface Phonon Polaritons on Piezoelectric Superlattices."
*Physical Review Letters*, 117, 103201. - G. F. Shou and L. Ding, 2016: "EEG-based Single-trial Detection of Errors from Multiple Error-related Brain Activity."
*Proc. of 38th Annual Int. Conf. of IEEE-EMBS*, accepted. - G. F. Shou, H. Yuan, D. Urbano, Y. H. Cha and L. Ding, 2016: "Optimizing rTMS treatment of a balance disorder with EEG neural synchrony and functional connectivity."
*Proc. of 38th Annual Int. Conf. of IEEE-EMBS*, accepted. - C. Soltanpur and J. R. Cruz, 2016: "Near Optimal Viterbi Algorithm for Storage Channels with Linear Regressive Noise."
*IEEE Journal on Selected Areas in Communications*, 34 (9), 2518-2524. DOI: 10.1109/JSAC.2016.2603718. - D. R. Stratman, 2016: "Sensitivities of 1-km Forecasts of Tornadic Supercells to Microphysics Parameterizations, Assimilated Radar Data, and Assimilation Techniques." Ph.D. dissertation (advisor K. Brewster), School of Meteorology, University of Oklahoma.
- T. Supinie, N. Yussouf, Y. Jung, M. Xue, J. Cheng and S. Wang, 2016: "Comparison of the Analysis and Forecasts of a Tornadic Supercell Storm from Assimilating Phased Array Radar and WSR-88D Observations."
*Wea. Foreacasting*, submitted. - M. Suttipong, 2016: "Molecular self-assembly of surfactants on solid surfaces." Ph.D. dissertation (advisor A. Striolo), Department of Chemical Engineering, University College London.
- A. Taghavi, K. K. Muraleetharan, G. A. Miller and A. B. Cerato, 2016: "Centrifuge Modeling of Laterally Loaded Pile Groups in Improved Soft Clay."
*Journal of Geotechnical and Geoenvironmental Engineering*, 142, (4). DOI: 10.1061/(ASCE)GT.1943-5606.0001443. - P. F. Tang, J. S. Pei, J. P. Wright and F. Gay-Balmaz, 2016: "Instantaneous bandwidth for backbone technique demonstrated by the Duffing oscillator."
*Mechanical Systems and Signal Processing*, Elsevier, under review. - J. J. Tong, Q. G. Lin, R. Xiao and L. Ding, 2016: "Combining multiple features for error detection and its application in brain-computer interface."
*BioMedical Engineering OnLine*, 15 (1), 17. DOI: 10.1186/s12938-016-0134-9. - T. B. Trafalis, B. Santosa and M. B. Richman, 2016: "Tornado detection with kernel-based classifiers from WSR-D88 radar." I. S. Kotsireas, A. Nagurney and P. M. Pardalos, eds.,
*Dynamic of Disasters*, Springer, in press. - P. Vallely, M. E. Moreno-Raya, E. Baron, P. Ruiz-Lapuente, I. Domínguez, L. Galbany, J. I. González Hernández, J. Méndez, M. Hamuy, A. R. López-Sánchez, S. Catalán, E. Cooke, C. Fariña, R. Génova-Santos, R. Karjalainen, H. Lietzen, J. McCormac, F. Riddick, J. A. Rubiño-Martín, I. Skillen, V. Tudor, and O. Vaduvescu, 2016: "Supernova 2014J at M82 - II. Direct analysis of a middle-class Type Ia supernova."
*Monthly Notices of the Royal Astronomical Society*, 460 (2), 1614-1624. DOI: 10.1093/mnras/stw1088. - S. Verma, T. Zhao, K. Marfurt and D. Devegowda, 2016: "Estimation of Total-Organic-Carbon and Brittleness Volume."
*SEG Interpretation*, accepted. - M. Vo and D. V. Papavassiliou, 2016: "The effects of shear and particle shape on the physical adsorption of polyvinyl pyrrolidone on carbon nanoparticles."
*Nanotechnology*, 27 (32), article 325709. DOI: 10.1088/0957-4484/27/32/325709. - M. Vo and D. V. Papavassiliou, 2016: "Effect of Sodium Dodecyl Sulfate Adsorption on the Behavior of Water inside Single Walled Carbon Nanotubes with Dissipative Particle Dynamics Simulation."
*Molecules*, 21 (4), article 500. DOI: 10.3390/molecules21040500. - M. Vo and D. V. Papavassiliou, 2016: "Physical adsorption of PVP Polyvinyl Pyrrolidonepolymer on CNTs Carbon Nanotubes under shear studied with Dissipative Particle Dynamics simulations."
*Carbon*, 100, 291-301. DOI: 10.1016/j.carbon.2015.12.105. - M. Vo and D. V. Papavassiliou, 2016: "Interaction parameters between carbon nanotubes and water in Dissipative Particle Dynamics."
*Mol. Sim.*, 42 (9), 737-744. DOI: 10.1080/08927022.2015.1089989. - M. Vo, B. Shiau, J. H. Harwell and D. V. Papavassiliou, 2016: "Adsorption of anionic and non-ionic surfactants on Carbon nanotubes in water with Dissipative Particle Dynamics simulation."
*Journal of Chemical Physics*, 144 (20), article 204701. DOI: 10.1063/1.4949364. - B. Wawrik, C. R. Marks, I. A. Davidova, S. Pruitt, K. E. Duncan, J. M. Suflita and A. V. Callaghan, 2016: "Methanogenic paraffin degradation proceeds via addition to fumarate by 'Smithella' spp. facilitated by a syntrophic coupling with hydrogenotrophic methanogens."
*Environ Microbiol.*, 18 (8), 2604-19. DOI: 10.1111/1462-2920.13374. - B. Wawrik, C. R. Marks, I. A. Davidova, S. Pruitt, J. M. Suflita and A. V. Callaghan, 2016: "Metagenomic analysis of a methanogenic consortium involved in long chain n-alkane degradation."
*Environmental Microbiology*, in press. - M. J. Wenger, L. E. Murray-Kolb, J. E. H. Nevins, S. Venkatramanan, G. A. Reinhart and J. D. Haas, 2016: "Consumption of a double-fortified salt improves perceptual, attentional, and mnemonic functioning in women in India."
*American Journal of Clinical Nutrition*, under review. - J. Westrop, Q. Hu, A. Swindle, B. Gallagher, M. Elwood Madden and A. Elwood Madden, 2016: "Testing multiple hypotheses for the release of hexavalent chromium into the Central Oklahoma Aquifer."
*ES&T*, in revision. - W. Xi, W. Wang, G. L. Abbott and U. H. E. Hansmann, 2016: "Stability of a recently found triple-β-stranded Aβ1-42 fibril motif."
*J. Phys. Chem. B*, 120, 4548. DOI: 10.1021/acs.jpcb.6b01724. - J. P. Wright, P. F. Tang, J. S. Pei and F. Gay-Balmaz, 2016: "What is the Analytic-Signal Backbone of the Damped Harmonic Oscillator."
*Mechanical Systems and Signal Processing*, Elsevier, under review. - Q. Xu, L. Wei, J. Gao, Q. Zhao, K. Nai and S. Liu, 2016: "Multistep variational data assimilation: important issues and a spectral approach."
*Tellus A*, 68, 1-26. DOI: 10.3402/tellusa.v68.31110. - H. Yuan, J. Bodurka and L. Ding, 2016: "Exploring Spatiotemporal Dynamics of the Human Brain by Multimodal Imaging." Proc. of 38th Annual Int. Conf. of IEEE-EMBS, accepted.
- H. Yuan, L. Ding (co-first author), M. Zhu, V. Zotev, R. Phillips and J. Bodurka, 2016: "Reconstructing resting state brain networks from high-resolution EEG: spatial and temporal comparisons with fMRI."
*Brain Connectivity*, 6 (2), 122-135. DOI: 10.1089/brain.2014.0336. - Z. Zhuang, N. Yussouf and J. Gao, 2016: "The Analyses and Forecasts of 24 May 2011 Oklahoma Tornadic Supercell Storms using Ensemble of 3DVAR System."
*Adv. in Atmos. Sci.*, 33, 544-558.

## 2015

**Publications Facilitated by OU Research IT**

- E. J. Alred, M. Phillips, W. M. Berhanu and U. H. E. Hansmann, 2015: "On the lack of polymorphism in Aβ-peptide aggregates derived from patient brains."
*Protein Science*, 24, 923. DOI: 10.1002/pro.2668. - F. Anaya, L. Zhang, Q. Tan and D. E. Resasco, 2015: "Tuning the Acid-Metal Balance in Pd/ and Pt/Zeolite Catalysts for the Hydroalkylation of m-Cresol."
*Journal of Catalysis*, 328, 173–185. - P. J. Attar, 2015: "Jacobian-Free Newton-Krylov Method for Implicit Time-Spectral Solution of the Compressible Navier-Stokes Equations."
*International Journal for Numerical Methods in Fluids*, 79, 1-15. DOI: 10.1002/fld.4036. - E. A. Baron, B. Friesen, P. Hoeflich, M. Sullivan, E. Hsiao, R. S. Ellis, A. Gal-Yam, D. A. Howell, P. E. Nugent, I. Dominguez, K. Krisciunas, M. M. Phillips, N. Suntzeff, L. Wang and R. C. Thomas, 2015: "Spectral Models for Early Time SN 2011fe Observations."
*Mon. Not. R. Astron. Soc.*, 000, 1–9. DOI: 10.1093/mnras/stv1951. arXiv: 1508.04774. - W. M. Berhanu, E. J. Alred, N. A. Bernhardt and U. H. E. Hansmann, 2015: "All-atom simulation of amyloid aggregates."
*Physics Procedia*, 68C, 61. DOI: 10.1016/j.phpro.2015.07.110. - W. M. Berhanu, E. J. Alred and U. H. E. Hansmann, 2015: "Stability of Osaka mutant and wild-type fibril models."
*J. Phys. Chem. B*, 119, 13063. DOI: 10.1021/acs.jpcb.5b07987. - M. Bhavaraju and U. H. E. Hansmann, 2015: "Effect of single point mutations in a form of systemic amyloidosis."
*Protein Science*, 24, 1451. DOI: 10.1002/pro.2730. - E. S. Bridge, J. F. Kelly, X. Xiao, N. Batbayar, T. Natsagdorj, N. J. Hill, et al, 2015: "Stable Isotopes Suggest Low Site Fidelity in Bar-Headed Geese (Anser indicus) in Mongolia: Implications for Disease Transmission."
*Waterbirds*, 38, 123-220. - P. J. Brown, E. Baron, P. Milne, P. W. A. Roming and L. Wang, 2015, "Theoretical Clues to the Ultraviolet Diversity of Type Ia Supernovae."
*ApJ*, 809, 37-47. DOI: 10.1088/0004-637X/809/1/37 - L. B. Carlaw, J. A. Brotzge and F. H. Carr, 2015: "Investigating the impacts of assimilating surface observations on high-resolution forecasts of the 15 May 2013 tornado event."
*Electronic J. Severe Storms Meteor.*, 10 (2), 1-34. - Y. Chang, Z. Bouzarkouna and D. Devegowda, 2015: "Multi-Objective Optimization for Rapid and Robust Optimal Oilfield Development Under Geological Uncertainty."
*Computational Geosciences*, 19 (4), 993-950. - A. Clark, M. C. Coniglio, B. Coffer, G. Thompson, M. Xue and F. Kong, 2015: "Sensitivity of 24-h forecast dryline position and structure to boundary layer parameterizations in convection-allowing WRF model simulations."
*Wea. Forecasting*, 30, 613-638. - J. T. Cooper, G. Sinclair and B. Wawrik, 2015: "Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion."
*Frontiers of Aquatic Microbiology*, in press. - J. Cotes, B. Wawrik, C. Isom, W. B. Boling and A. V. Callaghan, 2015: "Interrogation of Chesapeake Bay sediment microbial communities for intrinsic alkane-utilizing potential under anaerobic conditions.
*FEMS Microbiology Ecology*, 91, 1-14, in press. Editor's Choice Article. DOI: 10.1093/femsec/fiu035. - D. Dasari, G. F. Shou and L. Ding, 2015: "Monitoring Mental States of the Human Brain in Action: from Cognitive Test to Real-world Simulations."
*Foundations of Augmented Cognition, Proceedings of 9th International Conference, AC 2015*, held as part of the 17th International Conference on Human-Computer Interaction, 178-186. - D. T. Dawson, M. Xue, J. Milbrandt and A. Shapiro, 2015: "Sensitivity of real-data simulations of the 3 May 1999 Oklahoma City tornadic supercell and associated tornadoes to multi-moment microphysics. Part I: Storm- and tornado-scale numerical forecasts."
*Mon. Wea. Rev.*, 143, 2241–2265. DOI: 10.1175/MWR-D-14-00279.1 - D. Devegowda, X. Xiong, F. Civan and R. Sigal, 2015: "The Role of Pore Proximity in Governing Fluid PVT Behavior and Produced Fluids Compositions in Liquids-Rich Shale Reservoirs." In
*Unconventional Oil and Gas Resources Handbook: Evaluation and Development*. DOI: 10.1016/B978-0-12-802238-2.00006-7. - B. E. Eskridge, E. Valle and I. Schlupp, 2015: "Emergence of Leadership within a Homogeneous Group."
*PLoS ONE*, 10 (7), e0134222. DOI: 10.1371/journal.pone.0134222. - N. Faginas-Lago, M. Albert´ı, A. Lagan`a and A. Lombardi, 2015: "Ion-Water Cluster Molecular Dynamics Using a Semiempirical Intermolecular Potential." O. Gervasi et al. (Eds.):
*Proceedings of the 15th International Conference on Computational Science and Its Applications (ICCSA 2015), Part II*,*Lecture Notes in Computer Science*, 9156, 355–370. DOI: 10.1007/978-3-319-21407-8_26 - H. Q. Fan, S. Kumar, C. Holloway, J. Gordon and J. P. Shaffer, 2015: "Effects of Vapor Cell Size on Rydberg Atom Electrometry."
*Physical Review Applied*, 4 044015. - H. Q. Fan, S. Kumar, H. Kubler, S. Karimkashi and J. P. Shaffer, 2015: "Rydberg atom-based electric field sensing from radio to terahertz frequencies."
*Journal of Physics B*, 48, 202001 (invited Topical Review). - A. O. Fierro, A. J. Clark, E. R. Mansell, D. R. MacGorman, S. R. Dembek and C. L. Ziegler, 2015: "Impact of storm-scale lightning data assimilation on WRF-ARW precipitation forecasts during the 2013 warm season over the contiguous United States."
*Monthly Weather Review*, 143 757-777. DOI: 10.1175/MWR-D-14-00183.1 - A. O. Fierro, E. R. Mansell, D. R. MacGorman and C. Ziegler, 2015: "Explicitly simulated electrification and lightning within a tropical cyclone based on the environment of Hurricane Isaac (2012)."
*Journal of the Atmospheric Sciences*, 72, 4167–4193. DOI: 10.1175/JAS-D-14-0374.1 - P. Flanagan, 2015: "The Dryline, Convective Initiation, and Rapid Evolution of Drought in Oklahoma During 2011." M.S. thesis, School of Meteorology (advisor J. Basara), University of Oklahoma.
- B. Friesen, 2015: "Spectrum Formation at Late Times in Type Ia Supernovae." Ph.D. dissertation (advisor E. Baron), Homer L. Dodge Department of Physics & Astronomy, University of Oklahoma.
- N. A. Gasperoni and X. Wang, 2015: "Adaptive Localization for the Ensemble-Based Observation Impact Estimate Using Regression Confidence Factors."
*Mon. Wea. Rev.*, 143, 1981–2000. DOI: 10.1175/MWR-D-14-00272.1. - H. W. German, S. Uyaver and U. H. E. Hansmann, 2015: "Self-Assembly of Phenylalanine-Based Molecules." 119 (9), 1609-1615. DOI: 10.1021/jp5077388.
- M. A. Ghazi, M. D. Nash, A. H. Fagg, L. Ding, T. H. A. Kolobe and D. Miller, 2015: "Novel Assistive Device for Teaching Crawling Skills to Infants."
*Proc. of 10th Conference on Field and Service Robotics*, paper #58. - F. Gong, H. M. Duong and D. V. Papavassiliou, 2015: "Inter-Carbon Nanotube Contact and Thermal Resistances in Heat Transport of Three-Phase Composites."
*J. Phys. Chemistry C*, 119 (14), 7614-7620. DOI: 10.1021/acs.jpcc.5b00651. - T. Ho, 2015: "Nanoscale fluid transport: From molecular signatures to applications." Ph.D. dissertation (advisor A. Striolo), Department of Chemical Engineering, University College London. Selected as a Springer Thesis.
- T. A. Ho and A. Striolo, 2015: "Promising Performance Indicators for Water Desalination and Aqueous Capacitors Obtained by Engineering the Electric Double Layer in Nano-Structured Carbon Electrodes."
*J. Phys. Chem. C*, 119 (6), 3331-3337. DOI: 10.1021/jp5084899. - T. A. Ho and A. Striolo, 2015: "Water and Methane in Shale Rocks: Flow Pattern Effects on Fluid Transport and Pore Structure."
*AIChE J.*, 61, (9), 2993. DOI: 10.1002/aic.14869V - Y. Hu, D. Devegowda and R. Sigal, 2016: "Microscopic Characterization of Wettability in Shale Kerogen with Varying Maturity Levels."
*Journal of Natural Gas Science and Engineering*, 33, 1078-1086. DOI: 10.1016/j.jngse.2016.06.014. - Y. Hu, D. Devegowda, A. Striolo, A. Phan, T. A. Ho, F. Civan and R. Sigal, 2015: "The Dynamics of Hydraulic Fracture Water Confined in Nano-Pores in Shale Reservoirs."
*Journal of Unconventional Oil And Gas Resources*, 9, 31–39. DOI: 10.1016/j.juogr.2014.11.004. - D. Jack, P. H. Hauschildt and E. Baron, 2015, "Identification of the Feature That Causes the I-band Secondary Maximum of a Type Ia Supernova."
*MNRAS*, 449, 3581-3586. 10.1093/mnras/stv474. - C. Jin, X. Xiao, P. Wagle, T. Griffis, J. Dong, C. Wu, Y. Qin and D. Cook, 2015: "Effects of in-situ and reanalysis climate data on estimation of cropland gross primary production using the Vegetation Photosynthesis Model."
*Agricultural and Forest Meteorology*, 213, 240-250. DOI: 10.1016/j.agrformet.2015.07.003. - J. M. Kurdzo, D. J. Bodine, B. L. Cheong and R. D. Palmer, 2015: "High-Temporal Resolution Polarimetric X-Band Doppler Radar Observations of the 20 May 2013 Moore, Oklahoma, Tornado."
*Mon. Wea. Rev.*, 143 (7), 2711-2735. DOI: 10.1175/MWR-D-14-00357.1 - A. LaBryer, P. J. Attar and P. Vedula, 2015: "A framework for large eddy simulation Burgers turbulence based upon spatial and temporal statistical information."
*Physics of Fluids*, 27, 035116. DOI: 10.1063/1.4916132. - T. Le, A. Striolo and D. R. Cole, 2015: "CO
_{2}/C_{4}H_{10}Mixtures Simulated in Silica Slit Pores: Relation between Structure and Dynamics.*J. Phys. Chem. C*, 119 (27), 15274–15284. DOI: 10.1021/acs.jpcc.5b03160. - T. Le, S. Ogbe, A. Striolo and D. R. Cole, 2015: "N-Octane Diffusivity Enhancement via Carbon Dioxide in Silica Slit-Shaped Nanopores – A Molecular Dynamics Simulation."
*Mol. Simul.*, 42 (9), 745-752. DOI: 10.1080/08927022.2015.1089991. - T. Le, D. R. Cole and A. Striolo, 2015: "Propane Simulated in Silica Pores: Adsorption Isotherms, Molecular Structure, and Mobility.
*Chem. Eng. Sci.*, 2013 Danckwerts Special Issue on Molecular Modelling in Chemical Engineering, 121, 292-299. DOI: 10.1016/j.ces.2014.08.022. - J. M. McClain, 2015: "Survey of Catalyst and Reductant Effects on Oxo-Rhenium Catalyzed Deoxydehydration of Glycols." Ph.D. dissertation (advisor K. Nicholas), Department of Chemistry & Biochemistry, University of Oklahoma.
- D. Miller, A. H. Fagg, L. Ding, T. H. A. Kolobe and M. A. Ghazi, 2015: "Robotic Crawling Assistance for Infants with Cerebral Palsy."
*Artificial Intelligence Applied to Assistive Technologies and Smart Environments: Papers from Workshops at the Twenty-Ninth Association for the Advancement of Artificial Intelligence Conference*, 36-38. - H. Neeman, K. Adams, J. Alexander, D. Brunson, S. P. Calhoun, J. Deaton, F. Fondjo Fotou, K. Frinkle, Z. Gray, E. Lemley, G. Louthan, G. Monaco, M. Morris, J. Snow and B. Zimmerman, 2015: "On Fostering a Culture of Research Cyberinfrastructure Grant Proposals within a Community of Service Providers in an EPSCoR State."
*Proc. XSEDE'15*, article 19. DOI: 10.1145/2792745.2792764. - Q. Nguyen, C. Srinivasan and D. V. Papavassiliou, 2015: "Flow induced separation in wall turbulence."
*Phys Rev E*, 91, 033019. DOI: 10.1103/PhysRevE.91.033019. - G. Niu, B. Wang, G. Zhang, J. B. King, R. H. Cichewicz and J. Li, 2015: "Targeting mosquito FREP1 with a fungal metabolite blocks malaria transmission."
*Scientific Reports*, 5, 14694. DOI: 10.1038/srep14694. - A. Phan, D. R. Cole and A. Striolo, 2015: "Factors Governing the Behaviour of Aqueous Methane in Narrow Pores."
*Philosophical Transactions A*, 374 (2060). DOI: 10.1098/rsta.2015.0019. - A. Phan, D. R. Cole, R. G. Weiss, et al., 2016: "Confined Water Determines Transport Properties of Guest Molecules in Narrow Pores."
*ACS Nano*, 10 (8), 7646-7656. - Y. Qin,, X. Xiao,J. Dong, G. Zhang, M. Shimada, J. Liu, C. Li, W. Kou and B. Moore III, 2015: "Forest cover maps of China in 2010 from multiple approaches and data sources: PALSAR, Landsat, MODIS, FRA, and NFI."
*ISPRS Journal of Photogrammetry and Remote Sensing*, 109, 1-16. DOI: 10.1016/j.isprsjprs.2015.08.010. - A. J. Quiroga, K. K. Muraleetharan, A. B. Cerato and G. A. Miller, 2015: "Stress-Strain Behavior of Cement-Improved Clays."
*Proc. IFCEE2015*, San Antonio TX. - M. Razi, P. J. Attar and P. Vedula, 2015: "Adaptive Finite Difference Solutions of Liouville Equations in Computational Uncertainty Quantification."
*Reliability Engineering and System Safety*, 142, 267-278. DOI: 10.1016/j.ress.2015.05.024. - M. Razi, P. J. Attar and P. Vedula, 2015: "Grid Adaptation and Non-Iterative Defect Correction for Improved Accuracy of Numerical Solutions of PDEs."
*Applied Mathematics and Computation*, 269, 473-487. DOI: 10.1016/j.amc.2015.07.103. - M. Razi, P. J. Attar and P. Vedula, 2015: "Uncertainty quantification of multidimensional dynamical systems based on adaptive numerical solutions of the Liouville equation."
*Probabilistic Engineering Mechanics*, 42, 7-20. DOI: 10.1016/j.probengmech.2015.09.002. - J. D. Ross, J. F. Kelly, E. S. Bridge, M. H. Engel, D. L. Reinking and W. A. Boyle, 2015: "Pallid bands in feathers and associated stable isotope signatures reveal effects of severe weather stressors on fledgling sparrows."
*PeerJ*, 3, e814. DOI: 10.7717/peerj.814. - S. N. H. Shah, 2015: "Nurturing Promotes the Evolution of Learning in Changing Environments." Ph.D. dissertation (advisor D. Hougen), School of Computer Science, University of Oklahoma. URI: http://hdl.handle.net/11244/15447.
- G. F. Shou, D. Dasari and L. Ding, 2015: "Pre-stimulus alpha and post-stimulus N2 foreshadow imminent errors."
*Neuropsychologia*, 77, 346-58. DOI: 10.1016/j.neuropsychologia.2015.09.006. - G. F. Shou and L. Ding, 2015: "Detection of EEG Spatial–Spectral–Temporal Signatures of Errors: A Comparative Study of ICA-Based and Channel-Based Methods."
*Brain Topography*, 28 (1), 47-61. DOI: 10.1007/s10548-014-0397-z - A. M. Spain, M. S. Elshahed, F. Z. Najar and L. R. Krumholz, 2015: "Metatranscriptomic analysis of a high-sulfide aquatic spring reveals insights into sulfur cycling and unexpected aerobic metabolism."
*PeerJ*, 3, e1259. DOI: 10.7717/peerj.1259. - P. M. Stepanian, P. B. Chilson and J. F. Kelly, 2014: "An introduction to radar image processing in ecology."
*Methods in Ecology and Evolution*, 5, 730–738. DOI: 10.1111/2041-210X.12214. - D. R. Stratman and K. A. Brewster, 2015: "Impact of Assimilating CASA X-Band Radar Data for 24 May 2011 Tornadic Storms Using Various Microphysics Schemes at 1-km Grid Spacing."
*37th Conf. on Radar Meteor.*, Amer. Meteor. Soc., Norman OK. - M. D. Stritzinger, S. Valenti, P. Hoeflich, E. Baron, M. M. Phillips, F. Taddia, R. J. Foley, E. Y. Hsiao, S. W. Jha, C. McCully, V. Pandya, J. D. Simon, S. Benetti, P. J. Brown, C. R. Burns, A. Campillay, C. Contreras, F. Forster, S. Holmbo, G. H. Marion, N. Morrell and G. Pignata, 2015: "Comprehensive Observations of the Bright and Energetic Type Iax SN 2012Z: Interpretation as a Chandrasekhar Mass White Dwarf Explosion."
*A&A*, 573, A2. DOI: 10.1051/0004-6361/201424168. - A. Striolo, A. Michaelides and L. Joly, 2016: "The Carbon-Water Interface: Modeling Challenges and Opportunities for the Water-Energy Nexus."
*Annual Review of Chemical and Biomolecular Engineering*, vol 7, J. M. Prausnitz, ed, 533ff. - M. Suttipong, B. P. Grady and A. Striolo, 2015: "Surfactant Aggregates Templated by Lateral Confinement."
*J. Phys. Chem. B*, 119 (17), 5467-5474. Also featured in the cover art of JPCB, volume 119, issue # 17, April 30th, 2015. DOI: 10.1021/jp511427m - M. Suttipong and A. Striolo, 2015: "Equimolar Mixtures of Aqueous Linear and Branched SDBS Surfactant Simulated on Single Walled Carbon Nanotubes."
*RSC Advances*, 5 (109), 90049-90060. DOI: 10.1039/C5RA17862B - A. Taghavi, K. K. Muraleetharan, G. A. Miller and A. B. Cerato, 2015: "Dynamic Pile-Soil-Pile Interaction in Improved Soft Clay: Centrifuge Tests."
*Proc. IFCEE2015*, San Antonio TX. - Q. Tan, G. Wang, L. Nie, A. Dinse, C. Buda, J. Shabaker and D. E. Resasco, 2015: "Different Product Distributions and Mechanistic Aspects of the Hydrodeoxygenation of m-Cresol over Platinum and Ruthenium Catalysts."
*ACS Catalysis*, 5, 6271–6283. - G. Thompsona, M. Tewaria, K. Ikedaa, S. Tessendorfa, C. Weeksa, J. Otkinb and F. Kong, 2015: "Explicitly-coupled cloud physics and radiation parameterizations and subsequent evaluation in WRF high-resolution convective forecasts."
*Atmospheric Research*, 168, 92–104. DOI: 10.1016/j.atmosres.2015.09.005. - J. J. Tong, P. Zhang, R. Xiao and L. Ding, 2015: "The Portable P300 Dialing System based on Tablet and Emotiv Epoc Headset."
*Proc. of 37th Annual Int. Conf. of IEEE-EMBS*, accepted. - A. T. Tran, 2015: "Selection of Metal Complex Catalysts by Templating with Transition State Analogs." Ph.D. dissertation (advisor K. Nicholas), Department of Chemistry & Biochemistry, University of Oklahoma.
- P.-E. Tremblay, A. Gianninas, M. Kilic, H.-G. Ludwig, M. Steffen, B. Freytag and J. J. Hermes, 2015: "3D Model Atmospheres for Extremely Low-mass White Dwarfs."
*Astrophysical Journal*, 809, 148. arXiv:1507.01927 [astro-ph.SR]. DOI: 10.1088/0004-637X/809/2/148. - N. R. Tummala, S. Liu, D. Argyris and A. Striolo, 2015: "Interfacial Water Properties in the Presence of Surfactants."
*Langmuir*, 31 (7), 2084-2094. DOI: 10.1021/la504388r - A. Urvoy, F. Ripka, I. Lesanovsky, D. Booth, J. P. Shaffer, T. Pfau and R. Low, 2015: "Strongly correlated growth of Rydberg aggregates in a vapor cell."
*Physical Review Letters*, 115, 203002 (editor highlight). - C. Wainwright, P. Chilson, J. Gibbs, T. Bonin, E. Fedorovich and R. Palmer, 2015: "Methods for Evaluating Structure Function Parameters using Unmanned Aerial Systems and Large Eddy Simulation."
*Journal of Boundary Layer Meteorology*. - H. Wang, Y. A. Afrane, G. Yan and J. Li, 2015: "Constructing a Genome-Wide LD Map of Wild
*A. gambiae*Using Next-Generation Sequencing."*BioMed Research International*, 238139. DOI: 10.1155/2015/238139. - R. Xiao and L. Ding, 2015: "EEG resolutions in detecting and decoding finger movements from spectral analysis."
*Frontiers in Human Neuroscience*, 9, 308, 2015. DOI: 10.3389/fnins.2015.00308. - R. Xiao, X. Qi, A. H. Fagg, T. H. A. Kolobe, D. P. Miller and L. Ding, 2015: "Spectra of Infant EEG within the First Year of Life: a Pilot Study."
*Proc. of 37th Annual Int. Conf. of IEEE-EMBS*, 4753-4756. DOI: 10.1109/EMBC.2015.7319456. - Z. Yang and N. Pan, 2015: "Computational studies of ion-neutral reactions of astrochemical relevance: Formation of hydrogen peroxide, acetamide, and amino acetonitrile."
*International Journal of Mass Spectrometry*, 378, 364-368. DOI: 10.1016/j.ijms.2014.10.015. - F. Yasar, N. A. Bernhardt and U. H. E. Hansmann, 2015: "Replica-Exchange-with-Tunneling for fast Exploration of Protein Landscapes."
*J. Chem. Phys.*, 143 (22), 224102. DOI: 10.1063/1.4936968.

F. Yasar, N. A. Bernhardt and U. H. E. Hansmann, 2016: Response to "Comment on 'Replica-exchange-with-tunneling for fast exploration of protein landscapes.'"*J. Chem. Phys.*, 145 (5), 057102. DOI: 10.1063/1.4960188. - R. A. Zander, N. Obeng-Adjei, J. J. Guthmiller, D. I. Kulu, J. Li, A. Ongoiba, B. Traore, P. D. Crompton and N. S. Butler, 2015: "PD-1 Co-inhibitory and OX40 Co-stimulatory Crosstalk Regulates Helper T Cell Differentiation and Anti-Plasmodium Humoral Immunity."
*Cell Host & Microbe.*, 17 (5), 628-641. DOI: 10.1016/j.chom.2015.03.007. - C. Zhang, A. Safavi-Naini and B. Capogrosso-Sansone, 2015: "Equilibrium phases of two-dimensional bosons in quasiperiodic lattices."
*Phys. Rev. A*, 91, 031604(R). DOI: 10.1103/PhysRevA.91.031604. - G. Zhang, G. Niu, C. M. Franca, Y. Dong, X. Wang, N. S. Butler, G. Dimopoulos and J. Li, 2015: "Anopheles midgut FREP1 mediates Plasmodium invasion."
*J. Biol. Chem.*, 290 (27), 16490-16501. DOI: 10.1074/jbc.M114.623165. - D. Zrnic, V. Melnikov, R. Doviak and R. Palmer, 2015: "Scanning Strategy for the Multifunction Phased Array Radar to Satisfy Aviation and Meteorological Needs."
*IEEE GRSS Letters*, 12 (6), 1204-1208.

## 2014

**Publications Facilitated by OU Research IT**

- J. Acre, B. E. Eskridge, N. Zoller and I. Schlupp, 2014: "Adapting to a Changing Environment Using Winner and Loser Effects."
*Proc. GECCO Comp '14, the 2014 Conference Companion on Genetic and Evolutionary Computation*, 137-144. DOI: 10.1145/2576768.2598355. - J. Acre, B. E. Eskridge and N. Zoller, 2014: "Effects of Personality Decay on Collective Movements."
*Proc. GECCO Comp '14, the 2014 Conference Companion on Genetic and Evolutionary Computation*, 1025-1028. DOI: 10.1145/2598394.2605678. - E. J. Alred, E. G. Scheele, W. M. Berhanu and U. H. E. Hansmann, 2014: "Stability of Iowa Mutant and Wild Type Aβ-peptide Aggregates."
*J Chem Phys.*, 141 (17), 175101. DOI: 10.1063/1.4900892. - K. J. Baea, H. Baea, A. Lessab and H. Serce, 2014: "Coupled Boltzmann computation of mixed axion neutralino dark matter in the SUSY DFSZ axion model."
*Journal of Cosmology and Astroparticle Physics*, 10 (2014) 082. DOI: 10.1088/1475-7516/2014/10/082. - E. Baron, 2014: "SNe Ia: Can Chandrasekhar mass explosions reproduce the observed zoo?"
*Nuclear Physics A*, 928, 319-330. DOI: 10.1016/j.nuclphysa.2014.04.026. - M. D. Benge, R. C. Huck and H. H. Sigmarsson, 2014: "X-Band Performance of Three-Dimensional, Selectively Laser Sintered Waveguides."
*Antennas and Propagation Society International Symposium (APSURSI), 2014 IEEE*, 1-2. DOI: 10.1109/APS.2014.6904338. - W. M. Berhanu and U. H. E. Hansmann, 2014: "Inter-species cross-seeding: stability and assembly of rat - human amylin aggregates."
*PlosONE*, 9, e97051. DOI: 10.1371/journal.pone.0097051. - W. M. Berhanu and U. H. E. Hansmann, 2014: "Stability of Amyloid Oligomers."
*Advances in Protein Chemistry and Structural Biology*, 96, 113-141, DOI: 10.1016/bs.apcsb.2014.06.006. - H. Bluestein, R. Rauber, D. Burgess, B. Albrecht, S. Ellis, Y. Richardson, D. Jorgensen, S. Frasier, P. Chilson, R. Palmer, S. Yuter, W.-C. Lee, D. Dowell, P. Smith, P. Markowski, K. Friedrich and T. Weckwerth, 2014: "Radar in atmospheric sciences and related research – Current systems, emerging technologies and future needs."
*Bulletin of the American Meteorological Society*. - D. J. Bodine, R. D. Palmer and G. Zhang, 2014: "Dual-wavelength polarimetric radar analyses of tornadic debris signatures."
*Journal of Applied Meteorology and Climatology*, 53, 242-261. - D. Booth, S. Rittenhouse, J. Yang, H. Sadeghpour and J. P. Shaffer, 2014: "Production of trilobite Rydberg molecule dimers with thousand-Debye permanent electric dipole moments."
*Science*, 348 (6230), 99-102. arXiv:1411.5291v2. DOI: 10.1126/science.1260722. - E. S. Bridge, J. F. Kelly, X. Xiao, J. Y. Takekawa, N. J. Hill, M. Yamage, E. Ul Haque, M. A. Islam, T. Mundkur, K. E. Yavuz, P. Leader, C. Y. H. Leung, B. Smith, K. A. Spragens, K. Vandegrift, P. Hosseini, S. Saif, S. Mohsanin, A. Mikolon, A. Islam, A. George, B. Sivananinthaperumal, P. Daszak and S. H. Newman, 2014: "Bird Migration and Avian Influenza: A Comparison of Stable Isotope and Satellite Tracking Methods."
*Ecological Indicators*, 45, 266-273. - K. Calhoun, T. M. Smith, D. M. Kingfield, J. Gao and D. J. Stensrud, 2014: "Forecaster Use and Evaluation of realtime 3DVAR analyses during Severe Thunderstorm and Tornado Warning Operations in the Hazardous Weather Testbed."
*Wea. Forecasting*, 29, 601-613. DOI: 10.1175/WAF-D-13-00107.1 - S. P. Calhoun, D. Akin, J. Alexander, B. Zimmerman, B. George and H. Neeman, 2014: "The Oklahoma PetaStore: A Business Model for Big Data on a Small Budget."
*Proc. XSEDE'14*, paper 73. DOI: 10.1145/2616498.2616548. - L. Carlaw, 2014: "Evaluating the impacts of assimilating surface observations on high-resolution analyses and forecasts." M.S. thesis, School of Meteorology (advisors F. Carr, J. Brotzge), University of Oklahoma.
- A. J. Clark, R. G. Bullock, T. L. Jensen, M. Xue and F. Kong, 2014: "Application of object-based time-domain diagnostics for tacking precipitation systems in convection-allowing models."
*Wea. and Forecasting*, 29, 517-542. - T. Connelly, S. E. Bear, J. T. Cooper, D. A. Bronk and B. Wawrik, 2014: "Urea Uptake and Carbon Fixation by Marine Pelagic Bacteria and Archaea During the Arctic Summer and Winter Seasons."
*Applied and Environmental Microbiology*, 80, 19, 6013-3022. DOI: 10.1128/AEM.01431-14 - J. C. DeForest, L. Du and P. M. Joyner, 2014: "4',4‴,7,7″-tetra-O-methylcupressuflavone inhibits seed germination of Lactuca sativa."
*J Nat Prod.*, 77 (4), 1093-6. Epub 2014 Mar 14. DOI: 10.1021/np4010739. - K. Dhanapalan, D. Devegowda, F. Civan and R. F. Sigal, 2014: "Phase Behavior and Storage in Organic Shale Nanopores: Modeling of Multicomponent Hydrocarbons in Connected Pore Systems and Implications for Fluids-in-place Estimates in Shale Oil and Gas Reservoirs."
*SPE Unconventional Resources Conference*, Houston TX, paper SPE 169008. - L. Ding, G. F. Shou, H. Yuan, D. Urbano and Y. H. Cha, 2014: "Lasting Modulation Effects of rTMS on Neural Activity and Connectivity as Revealed by Resting-State EEG."
*IEEE Transactions on Biomedical Engineering*, 61 (7), 2070-2080. Epub 2014 Mar 25. DOI: 10.1109/TBME.2014.2313575. - A. Doloman, 2014: "Single-cell genomics of a candidate division TM6 - uncultured bacterial phylum in Zodletone Spring, Oklahoma." M.S. thesis, Department of Microbiology & Plant Biology (advisor L. Krumholz), University of Oklahoma.
- J. Dong, X. Xiao, S. Sheldon, C. Biradar, G. Zhang, N. D. Duong, M. Hazarika, K. Wikantika, W. Takeuchi and B. Moore, 2014: "A 50-m forest cover map in Southeast Asia from ALOS/PALSAR and its application on forest fragmentation assessment."
*PLoS One*, 9 (1), e85801. DOI: 10.1371/journal.pone.0085801. - L. Du, A. J. Robles, J. B. King, S. L. Mooberry and R. H. Cichewicz, 2014: "Cytotoxic dimeric epipolythiodiketopiperazines from the ascomycetous fungus Preussia typharum."
*J Nat Prod.*, 77 (6), 1459-66. Epub 2014 Jun 3. DOI: 10.1021/np5002253. - A. O. Fierro, 2014: "Relationships between California rainfall variability and large-scale climate drivers."
*International Journal of Climatology*, 34, 3626-3640. DOI: 10.1002/joc.4112. - A. O. Fierro, J. Gao, C. Ziegler, E. R. Mansell, D. R. MacGorman and S. Dembek, 2014: "Evaluation of a cloud scale lightning data assimilation technique and a 3DVAR method for the analysis and short term forecast of the 29 June 2012 derecho event."
*Monthly Weather Review*, 142, 183-202. - A. O. Fierro and L. M. Leslie, 2014: "Relationships between southeast Australian temperature anomalies and large-scale climate drivers."
*Journal of Climate*, 27, 1395-1412. - A. O. Fierro, E. R. Mansell, C. Ziegler and D. R. MacGorman, 2014: "Explicit electrification and lightning forecast implemented within the WRF-ARW model." Preprint,
*15th International Conference on Atmospheric Electricity*, Norman OK USA, June 15-20. Commission of the International Association of Meteorology and Atmospheric Physics. - A. O. Fierro, E. R. Mansell, C. Ziegler, D. R. MacGorman, S. Dembek and A. J. Clark, 2014: "A cloud-scale lightning data assimilation technique implemented within the WRF-ARW model." Preprint,
*15th International Conference on Atmospheric Electricity*, Norman OK USA, June 15-20. Commission of the International Association of Meteorology and Atmospheric Physics. - B. Friesen, E. Baron, J. P. Wisniewski, J. T. Parrent, R. C. Thomas, T. R. Miller and G. H. Marion, 2014: "Near-infrared Line Identification in Type Ia Supernovae During the Transitional Phase."
*The Astrophysical Journal*, 792, 120. - C. F. Gaitán Ospina, K. W. Dixon, R. A. McPherson, B. Moore III, V. Balaji and A. Radhakrishnan, 2014: "Statistically downscaled North American precipitation using support vector regression and the perfect model evaluation framework."
*11th International Conference on Hydroinformatics*, New York NY, August 17 - 21 2014. DOI: 10.13140/2.1.3456.1602. - J. Gao and D. J. Stensrud, 2014: "Some Observing System Simulation Experiments with a Hybrid 3DEnVAR System for Stormscale Radar Data Assimilation."
*Mon. Wea. Rev.*, 142, 3326-3346. DOI: 10.1175/MWR-D-14-00025.1 - F. Gong, K. Bui, D. V. Papavassiliou and H. M. Duong, 2014: "Thermal transport phenomena and limitations in heterogeneous polymer nanocomposites containing Carbon Nanotubes and inorganic nanoparticles."
*Carbon*, 78, 305-316. DOI: 10.1016/j.carbon.2014.07.007. - F. Gong, D. V. Papavassiliou and H. Duong, 2014: "Off-lattice Monte-Carlo simulation of heat transfer through Carbon nanotube multiphase systems taking into account thermal boundary resistance."
*Numerical Heat Transfer, Part A: Applications*, 65 (11), 1023-1043. DOI: 10.1080/10407782.2013.850972. - F. Gong, H. Zhang, D. V. Papavassiliou, K. Bui, C. Lim and H. M. Duong, 2014: "Mesoscopic Modeling of Cancer Photothermal Therapy using Single-walled Carbon Nanotubes and Near Infrared Radiation: Insights through an Off-lattice Monte Carlo Approach."
*Nanotechnology*, 25 (20), 205101 (11 pages). DOI: 10.1088/0957-4484/25/20/205101. - R. E. Gordnier and P. J. Attar, 2014: "Impact of flexibility on the aerodynamics of an aspect ratio two membrane wing."
*Journal of Fluids and Structures*, 45, 138-152. - L. Grasso, D. Bikos, D. Lindsey, K.-S. Lim, A. Clark and S. Dembek, 2014: "Evaluation of and Suggested Improvements to the WSM6 Microphysics in WRF-ARW Using Synthetic and Observed GOES-13 Imagery.."
*Monthly Weather Review*, 22 (10), 3635-3650. - D. Grimmer, A. Safavi-Naini, B. Capogrosso-Sansone and Ş. G. Söyler, 2014: "Quantum Phases of Soft-Core Dipolar Bosons in Optical Lattices."
*Phys. Rev. A*, accepted. Arxiv:1408.3532. - S. Guo, B. Zhang, S. Verma and K. J. Marfurt, 2014: "Vector correlation of AVAz and curvature attribute-Application to Mississippian Tripolitic Chert, Osage County, Northeast Oklahoma."
*SEG Technical Program Expanded Abstracts 2014*, 346-350. - P. H. Hauschildt and E. Baron, 2014. "A 3D radiative transfer framework. XI. Multi-level NLTE."
*Astronomy and Astrophysics*, 566, A89. - M. D. P. Hemantha, Y. Wang and C.-H. Chuang, 2014: "Measurement of
*H*(*z*) and*D*(_{A}*z*) from the two-dimensional power spectrum of Sloan Digital Sky Survey luminous red galaxies."*Monthly Notices of the Royal Astronomical Society*, arXiv: 1310.6468. DOI: 10.1093/mnras/stu1997. - Z. Hensley and D. V. Papavassiliou, 2014: "Drag coefficient for spherical and non-spherical mocroparticles suspended in square microducts."
*Ind. & Eng. Chem. Res.*, 53 (25), 10465-10474,. DOI: 10.1021/ie5007646. - T. A. Ho and A. Striolo, 2014: "Molecular Dynamics Simulation of the Graphene-Water Interface: Comparing Water Models."
*Mol. Simul.*, 40 (14), 1190-1200. DOI: 10.1080/08927022.2013.854893. - T. A. Ho and A. Striolo, 2014: "Molecular Dynamics Simulation of the Graphene-Water Interface: Comparing Water Models."
*Mol. Simul.*, 40, 1190-1200. Impact Factor (2013): 1.119. - Y. Hu, D. Devegowda and R. F. Sigal, 2014: "Impact of Maturity on Kerogen Wettability: A Modeling Study."
*SPE Annual Technical Conference and Exhibition*, Amsterdam Netherlands, paper SPE 170915. DOI: 10.2118/170915-MS. - Y. Hu, D. Devegowda, A. Striolo, F. Civan and R. Sigal, 2014: "A Pore Scale Study Describing the Dynamics of Slickwater Distribution in Shales Following Hydraulic Fracturing."
*SPE Journal*. DOI: 10.2118/167234-PA. - Y. Hu, D. Devegowda, R. Sigal, A. Striolo, A. Phan and T. A. Ho, 2015: "The Impact of Pore Size and Kerogen Maturity on the Behavior of Water in Organic Kerogen Nanopores in Shales."
*Proc. 3rd Unconventional Resources Technology Conference*. DOI: 10.15530/urtec-2015-2174600. - Y. Hu, D. Devegowda, A. Striolo, A. T. V. Phan, T. A. Ho, F. Civan and R. Sigal, 2014: "Microscopic Dynamics of Water and Hydrocarbon in Shale-Kerogen Pores of Potentially Mixed Wettability."
*SPE Journal*, 20 (1), 112-124. DOI: 10.2118/167234-PA. - M. Hunter, 2014: "State Space Dynamic Mixture Modeling: Finding People with Similar Patterns of Change." Ph.D. dissertation (advisor J. Rodgers), Department of Psychology, University of Oklahoma.
- A. Johnson, X. Wang, M. Xue, F. Kong, K. Thomas, Y. Wang, K. Brewster and J. Gao, 2014: "Multiscale characteristics and evolution of perturbations for warm season convection allowing precipitation forecasts: Dependence on background flow and method of perturbation.
*Mon. Wea. Rev.*, 142 (3), 1053-1073. DOI:10.1175/MWR-D-13-00204.1 - Y. L. Kogan, 2014: "Parameterization of microphysics in cumulus convective clouds."
*14th Conference on Cloud Physics*, July 7-11 2014, Boston MA USA. - Y. L. Kogan and D. B. Mechem, 2014: "A PDF based microphysics parameterization for shallow cumulus cloud."
*J. Atmos. Sci.*, 71 (3), 1070-1089. DOI: 10.1175/JAS-D-13-0193.1 - L. R. Krumholz, P. Bradstock, C. S. Sheik, Y. Diao, O. Gazioglu, Y. Gorby and M. J. McInerney, 2015: "Syntrophic growth of Desulfovibrio alaskensis requires genes for H2 and formate metabolismras well as those for flagellum and biofilm formation."
*Appl. Environ. Microbiol.*, 81, 7, 2339-2348. - J. Kurdzo, B. Cheong, R. Palmer and G. Zhang, 2014: "A Pulse Compression Waveform for Improved-Sensitivity Weather Radar Observations."
*Journal of Atmospheric and Oceanic Technology*, 31, 2713-2731. - A. LaBryer, P. J. Attar, P. Vedula, 2014: "Optimal spatiotemporal reduced order modeling of the viscous Burgers equation."
*Finite Elements in Analysis and Design*, 79, 40-52. - N. D. Lange, D. R. Buttaccio, E. J. Davelaar and R. P. Thomas, 2014: "Using the Memory Activation Capture (MAC) procedure to investigate the temporal dynamics of hypothesis generation."
*Memory & Cognition*, 42 (2), 264-74. DOI: 10.3758/s13421-013-0354-1. - L. Li and L. Gruenwald, 2014: "SMOPD-C: An Autonomous Vertical Partitioning Technique for Distributed Databases on Cluster Computers."
*IEEE International Conference on Information Integration and Reuse (IRI)*, San Francisco CA. - K. Liao, R. R. Xiao, J. M. Gonzalez and L. Ding, 2014: "Decoding individual finger movements of one hand using human EEG signals."
*PLoS ONE*, 9 (1), e85192. DOI:10.1371/journal.pone.0085192. - Z. Liu, J.-G. Yu, E. A. O'Rear and A. Striolo, 2014: "Aqueous Dual-Tailed Surfactants Simulated on the Alumina Surface."
*J. Phys. Chem. B*, 18 (32), 9695-707. Epub 2014 Aug 4. Impact Factor (2013): 3.377. DOI: 10.1021/jp502916x - X.-C. Luu and A. Striolo, 2014: "Ellipsoidal Janus Nanoparticles Assembled at Spherical Oil/Water Interfaces."
*J. Phys. Chem. B*, 118, 13737-13743. Impact Factor (2013): 3.377. - C. X. Luu, J. Yu and A. Striolo, 2014: "Understanding Pickering Emulsions Using Multi-Scale Simulations."
*UK Colloids 2014*, London UK. - A. McGovern, D. J. Gagne II, J. K. Williams, R. A. Brown and J. B. Basara, 2014: "Enhancing understanding and improving prediction of severe weather through spatiotemporal relational learning."
*Machine Learning*, 95 (1), 27-50. DOI: 10.1007/s10994-013-5343-x - A. McGovern, D. H. Rosendahl and R. A. Brown, 2014: "Toward Understanding Tornado Formation Through Spatiotemporal Data Mining." Book chapter in
*Data Mining for Geoinformatics: Methods and Applications*, edited by G. Cervone, J. Lin and N. Waters. Springer Science Business Media, New York, 29-47. DOI: 10.1007/978-1-4614-7669-6_2. - R. A. McPherson, C. F. Gaitán Ospina, K. W. Dixon and B. Moore III, 2014: "Statistical downscaling." 39th Annual Meeting of the
*American Association of State Climatologists*, Stevenson WA. - M. Morris and K. Frinkle, 2014: "A Three-Semester, Interdisciplinary Approach to Parallel Programming in a Liberal Arts University Setting."
*Proc. XSEDE'14*, paper 66. DOI: 10.1145/2616498.2616567. - E. D. Mullens, 2014: "Moisture and Thermal Characteristics of Southern Plains Ice Storms: Insights from a regional climatology and high-resolution WRF-ARW sensitivity study." Ph.D. dissertation (advisor L. Leslie), School of Meteorology, University of Oklahoma.
- H. Neeman, D. Akin, J. Alexander, D. Brunson, S. P. Calhoun, J. Deaton, F. Fondjo Fotou, B. George, D. Gentis, Z. Gray, E. Huebsch, G. Louthan, M. Runion, J. Snow and B. Zimmerman, 2014: "The OneOklahoma Friction Free Network: Towards a Multi-Institutional Science DMZ in an EPSCoR State."
*Proc. XSEDE'14*, paper 72. DOI: 10.1145/2616498.2616542. - K. L. Nemunaitis, 2014: "Observational and model analyses of the Oklahoma City urban heat island." Ph.D. dissertation (advisor P. Klein), School of Meteorology, University of Oklahoma.
- O. Ozcelik and P. J. Attar, 2014: "Effect of nonlinear damping on the structural dynamics of flapping beams."
*International Journal of Nonlinear Mechanics*, 65, 148-163. DOI: 10.1016/j.ijnonlinmec.2014.05.005. - S. Ozturk, T.-Y. Yu, L. Ding, R. Palmer and N. Gasperoni, 2014: "Application of Compressive Sensing to Refractivity Retrieval Using Networked Weather Radars."
*IEEE Transactions on Geoscience and Remote Sensing*, 52 (1), 1-11. - N. H. Pham, 2014: "Transport phenomena in microscale channels and pores by numerical simulations." Ph.D. dissertation (advisor D. Papavassiliou), School of Chemistry, Biological & Materials Engineering,
- N. H. Pham and D. V. Papavassiliou, 2014: "Flow recovery downstream from nanoposts grown at the wall of a microchannel."
*Nanoscale and Microscale Thermophysical Engineering*, 18 (1), 1-17. - N. H. Pham, D. P. Swatske, J. H. Harwell, B. J. Shiau and D. V. Papavassiliou, 2014: "Transport of nanoparticles and kinetics in packed beds: A numerical approach with lattice Boltzmann simulations and particle tracking."
*International Journal of Heat and Mass Transfer*, 72, 319-328. - N. Pham, R. S. Voronov, N. R. Tummala and D. V. Papavassiliou, 2014: "Bulk stress distributions in the pore space of sphere-packed beds under Darcy flow conditions."
*Phys. Rev. E*, 89 (3), article 033016. DOI: 10.1103/PhysRevE.89.033016. (Highlighted in PRE Kaleidoscope.) - A. Phan, D. R. Cole and A. Striolo, 2014: "Aqueous Methane in Slit-Shaped Silica Nanopores: High Solubility and Traces of Hydrates."
*J. Phys. Chem. C*, 118 4860-4868. Impact Factor (2013): 4.835. - A. Phan, D. R. Cole and A. Striolo, 2014: "Preferential Adsorption from Liquid Water-Ethanol Mixtures in Alumina Pores."
*Langmuir*, 30, 8066-8077. Impact Factor (2013): 4.384. - A. Phan, T. A. Ho and A. Striolo, 2014: "Aqueous Systems Under Confinement: From Preferential Adsorption and Exotic Structures to Their Relevance in the Energy Landscape."
*ChemEngDayUK 2014 Conference*, Manchester UK. - A. Phan and A. Striolo, 2014: "Aqueous Methane in Slit-Shaped Silica Nanopores: High Solubility and Traces of Hydrates."
*ChemEngDayUK 2014 Conference*, Manchester UK. - B. J. Putnam, M. Xue, Y. Jung, N. A. Snook and G. Zhang, 2014: "The analysis and prediction of microphysical states and polarimetric variables in a mesoscale convective system using double-moment microphysics, multi-network radar data, and the ensemble Kalman filter."
*Mon. Wea. Rev.*, 142, 141-162. - L. Qiao, Y. Hong, R. McPherson, M. Shafer, D. Gade, D. Williams, S. Chen and D. Lilly, 2014: "Climate Change and Hydrological Response in the Trans-State Oologah Lake Watershed–Evaluating Dynamically Downscaled NARCCAP and Statistically Downscaled CMIP3 Simulations with VIC Model."
*Water Resour. Manag.*, 28 (10), 3291. DOI: 10.1007/s11269-014-0678-z - J. D. Ross, E. S. Bridge, M. J. Rozmarynowycz and V. P. Bingman, 2014: "Individual variation and evolutionary holdovers in the migratory behavior of a site-faithful, peripheral bird population."
*Animal Migration*, 2, 29-33. - S. Saeedi, W. S. Wilson, T. R. Ashley, J. Lee and H. H. Sigmarsson, 2014: "Capacitive-Based, Closed-Loop Frequency Control of Substrate-Integrated Cavity Tunable Filters."
*Proceedings of International Symposium on Microelectronics, International Microelectronics and Packaging Society (IMAPS)*. - S. Saeedi, J. Lee and H. H. Sigmarsson, 2014: "Broadband Implementation of Tunable, Substrate- Integrated, Evanescent-Mode, Cavity Bandpass Filters."
*Microwave Conference, 2014 European*, accepted. - A. Safavi-Naini, B. Capogrosso-Sansone and A. Kuklov, 2014: "Quantum phases of hard-core dipolar bosons in coupled 1D optical lattices."
*Phys. Rev. A*, accepted. Arxiv:1405.4328v1 - A. D. Schenkman, M. Xue and M. Hu, 2014: "Tornadogenesis in a high-resolution simulation of the 8 May 2003 Oklahoma City Supercell."
*J. Atmos. Sci.*, 71, 130-154. - S. J. Schroeder, 2014: "Probing Viral Genomic Structure: Alternative Viewpoints an Alternative Structures for Satellite Tobacco MOsaic Virus RNA."
*Biochemistry*, 53, 6278-6737. - Z. T. Segele, M. B. Richman, M. L. M. Leslie and P. J. Lamb, 2014: "Seasonal-to-Interannual Variability of Ethiopia/Horn of Africa Monsoon. Part II: Statistical Multi-Model Ensemble Rainfall Predictions."
*J. Climate.*, submitted. - I. N. Shilova, J. C. Robidart, H. J. Tripp, K. Turk-Kubo, B. Wawrik, A. F. Post, A. W. Thompson, B. B. Ward, J. T. Hollibaugh, A. Millard, M. Ostrowski, D. J. Scanlan, R. W. Paerl, R. Stuart and J. P. Zehr, 2014: "A microarray for assessing transcription from pelagic marine microbial taxa."
*ISME Journal*, 1, 1-14. DOI: 10.1038/ismej.2014.1 - G. F. Shou, D. Dasari and L. Ding, 2014: "Ongoing alpha activity and post-stimulus potentials jointly predict errors."
*NeuroImage*, under revision. - G. F. Shou and L. Ding, 2014: "Neural Markers for Immediate Performance Accuracy in a Stroop Color-Word Matching Task: An Event-Related Potentials Analysis."
*Proc. of Annual Int. Conf. of IEEE-EMBS*, 6222-6225. - G. F. Shou, H. Yuan, D. Urbano, Y. H. Cha and L. Ding, 2014: "Changes of Symptom and EEG in Mal De Debarquement Syndrome Patients after Repetitive Transcranial Magnetic Stimulation Over Bilateral Prefrontal Cortex: A Pilot Study."
*Proc. of Annual Int. Conf. of IEEE-EMBS*, 4294-4297. - J. W. Stone, S. Bleckley, S. Lavelle and S. J. Schroeder, 2014: "A Parallel Implementation of the Wuchty Algorithm with Additional Experimental Filters to More Thoroughly Explore RNA Conformational Space."
*PLoS ONE*, e0117217. - A. Striolo, 2014: "Aqueous Systems Under Confinement: Preferential Adsorption and Exotic Structures."
*9th Liblice Conference on the Statistical Mechanics of Liquids*, Sec, Czech Republic. - A. Striolo, 2014: "Understanding interfacial water and its role in practical applications using molecular simulations."
*MRS Bulletin*, 39 (12), 1062-1067. Invited article. DOI: 10.1557/mrs.2014.281. - A. Striolo, 2014: "Understanding Pickering Emulsions Using Multi-Scale Simulations."
*ACS 2014 Colloid & Surface Science Symposium*, University of Pennsylvania, Philadelphia PA. - A. Striolo, 2014: "Understanding Pickering Emulsions Using Multi-Scale Simulations."
*9th Liblice Conference on the Statistical Mechanics of Liquids*, Sec, Czech Republic. - M. Suttipong, B. P. Grady and A. Striolo, 2014: "Self-Assembled Surfactants on Patterned Surfaces: Confinement and Cooperative Effects on Aggregates Morphology.
*Phys. Chem. Chem. Phys.*, 16, 16388-16398. Also featured the cover art of*Phys. Chem. Chem. Phys.*, 16 (31), August 2 2014. - M. Suttipong, B. P. Grady and A. Striolo, 2014: "Self-Assembly of Aqueous Surfactants on Patterned Surfaces: Insights from Coarse-Grained Simulations."
*UK Colloids 2014*, London UK. - M. Suttipong, B. P. Grady and A. Striolo, 2014: "Self-Assembled Surfactants on Patterned Surfaces: Confinement and Cooperative Effects on Aggregates Morphology."
*Phys. Chem. Chem. Phys.*, 16, 16388-16398. Also featured the cover art of PCCP, volume 16, issue # 31, August 21st, 2014. Impact Factor (2013): 4.198. - M. Suttipong, C. X. Luu and A. Striolo, 2014: "Understanding Pickering Emulsions using Multi-Scale Simulations."
*ChemEngDayUK 2014 Conference*, Manchester UK. - A. T. Tran, P. Liu, K. N. Houk and K. M. Nicholas, 2014: "Regioselectivity in the Cu(I)-Catalyzed [4 + 2]-Cycloaddition of 2-Nitrosopyridine with Unsymmetrical Dienes."
*Journal of Organic Chemistry*, 79 (12), 5617-5626. - A. Urvoy, F. Ripka, I. Lesanovsky, D. Booth, J. P. Shaffer, T. Pfau and R. Löw, 2014: "Strongly correlated growth of Rydberg aggregates in a vapour cell."
*Phys. Rev. Lett.*, submitted. ArXiv:1408.0039 - S. Uyaver and U. H. E. Hansmann, 2014: "Multicanonical Monte Carlo Simulations of a de novo designed protein with end-to-end β-sheet."
*J. Chem. Phys.*, 140, 065101. - S. Verma, S. Guo and K. J. Marfurt, 2014: "Prestack suppression of high frequency ground roll using a 3D multiwindow KL filter: Application to a legacy Mississippi Lime survey."
*SEG Technical Program Expanded Abstracts 2014*, 4274-4278. - C. E. Wainwright, D. T. Dawson II, M. Xue and G. Zhang, 2014: "Diagnosing the intercept parameters of the exponential drop size distributions in a single-moment microphysics scheme and impact on supercell storm simulations."
*J. Appl. Meteor. Climatology*, 53, 2072-2090. - C. Wainwright, P. Stepanian, P. Chilson, R. Palmer, E. Fedorovich and J. Gibbs, 2014: "A Time-Series Sodar Simulator Based on Large Eddy Simulation."
*Journal of Atmospheric and Oceanic Technology*, 31, 4, 876-889. - Y. Wang, 2014: "Model-Independent Measurements of Cosmic Expansion and Growth at z=0.57 Using the Anisotropic Clustering of CMASS Galaxies From the Sloan Digital Sky Survey Data Release 9"
*Monthly Notices of the Royal Astronomical Society*, 443, 2950. - C. B. Wawrik, A. V. Callaghan, B. W. Stamps and B. Wawrik, 2014: "Genome Sequence of
*Youngiibacter fragilis*, the Type Strain of the Genus*Youngiibacter*."*ASM Genome Announcements*, 2, 1, e01183-13. DOI: 10.1128/genomeA.01183-13 - R. B. Williams, L. Du, V. L. Norman, M. G. Goering, M. O'Neil-Johnson, S. Woodbury, M. A. Albrecht, D. R. Powell, R. H. Cichewicz, G. R. Eldridge and C. M. Starks, 2014: "Diterpenes from the endangered goldenrod Solidago shortii."
*J Nat Prod.*, 77 (6), 1438-44. DOI:10.1021/np500178s. Epub 2014 Jun 12. - L. L. Wu, H. J. Cai, R. L. Gu, Y. Luo, J. X. Zhang, J. Yang, Y. Y. Shi and L. Ding, 2014: "Neural Manifestations of Implicit Self-esteem: An ERP Study."
*PLoS ONE*, 9 (7), e101837. DOI: 10.1371/journal.pone.0101837. - T. Wu, M. A. Armand and J. R. Cruz, 2014: "Detection-Decoding on Staggered BPMR Channels with Written-In Errors and Inter-Track Interference."
*Digests IEEE International Magnetics Conference*, CB-06. - T. Wu, M. A. Armand and J. R. Cruz, 2014: "Detection-Decoding on BPMR Channels with Written-in Error Correction and ITI Mitigation."
*IEEE Transactions on Magnetics*, 50, (1), 3000211. DOI: 10.1109/TMAG.2013.2281779. - R. Xiao and L. Ding, 2014: "Classification of Finger Pairs from One Hand Based on Spectral Features in Human EEG."
*Proc. of Annual Int. Conf. of IEEE-EMBS*, 1263-1266. - M. Xue, M. Hu and A. Schenkman, 2014: "Numerical prediction of 8 May 2003 Oklahoma City tornadic supercell and embedded tornado using ARPS with assimilation of WSR-88D radar data."
*Wea. Forecasting*, 29, 39-62. - F. Yasar, P. Jiang and U. H. E. Hansmann, 2014: "Multicanonical Molecular Dynamics Simulations of the N-terminal Domain of Protein L9."
*Euro. Phys. Lett.*, 105, 30008. - F. Yasar, A. K. Sieradzan and U. H. E. Hansmann, 2014: "Folding and Self-Assembly of a Small Heterotetramer."
*J. Chem. Phys.*, 140, 105103. - M. Yuan, A. Nara and J. Bothwell, 2014: "Space-time representation and analytics."
*Annals of GIS*, 20 (1), 1-9. - B. Zhang, S. Guo, F. Li, P. Li and K. J. Marfurt, 2014: "Brittleness evaluation of resource plays by integrating petrophysics and seismic analysis."
*SEG Technical Program Expanded Abstracts 2014*, 2667-2671. - B. Zhang, T. Zhao, J. Qi and K. J. Marfurt, 2014: "Strategies to preserve the data fidelity at far offset."
*SEG Technical Program Expanded Abstracts 2014*, 4691-4696. - C. X. Zhang, AKM Newaz, B. Wang, E. Zhang, G. Duan, D. Fleetwood, M. Alles, R. Schrimpf, K. Bolotin and S. T. Pantelides, 2014: "Electrical stress and total ionizing dose effects on MoS2 transistors."
*IEEE Trans. Nucl. Sci.*, 61 (6), 2862. - J. Zhang, S. You and L. Gruenwald, 2014: "Parallel Online Spatial and Temporal Aggregations on Multi-core CPUs and Many-Core GPUs."
*Information Systems*(Elsevier journal), 44, 134-154. - J. Zhang, S. You and L. Gruenwald, 2014: "Data Parallel Quadtree Indexing and Spatial Query Processing of Complex Polygon Data on GPUs."
*5th International Workshop on Accelerating Data Management Systems Using Modern Processors and Storage Architectures*, Hangzhou China. - J. Zhang, S. You and L. Gruenwald, 2014: "High-Performance Spatial Query Processing on Big Taxi Trip Data using GPGPUs."
*Proc. 3rd IEEE International Congress on BigData*, Anchorage AK. - K. Zhao and L. E. Bartley, 2014: "Comparative Genomic Analysis of the R2R3 MYB Secondary Cell Wall Regulators in Arabidopsis, poplar, rice, maize, and switchgrass."
*BMC Plant Biology*, 14, 135. - M. Zhu, W. B. Zhang, D. Dickens and L. Ding: 2014: "Reconstructing Spatially Extended Brain Sources via Enforcing Multiple Transform Sparseness."
*NeuroImage*, 86, 280-293. DOI:10.1016/j.neuroimage.2013.09.070.

## 2013

**Publications Facilitated by OU Research IT**

- M. I. Abdel-Fattah and R. M. Slatt, 2013: "Sequence Stratigraphic Controls on Reservoir Characterization and Architecture: Case study of the Messinian Abu Madi Incised-Valley, Baltim Fields, Egypt."
*J. Cent. Europe J. Geosciences*. - D. Argyris, A. Phan, P. D. Ashby and A. Striolo, 2013: "Hydration Structure at the α-AI
_{2}O_{3}(0001) Surface: Insights from Experimental AFM Force Spectroscopy Data and Atomistic Molecular Simulations."*J. Phys. Chem. C*, 117, 10433-10444. - J. Andrić, M. R. Kumjian, D. S. Zrnić, J. M. Straka and V. M. Melnikov, 2013: "Polarimetric Signatures above the Melting Layer in Winter Storms: An Observational and Modeling Study."
*J. Appl. Meteor. Climatol.*, 52, 682–700. DOI: 10.1175/JAMC-D-12-028.1 (13 citations "Web of Science") - J. Biener, M. A. Worsley, B. C. Wood, T. Ogitsu, M. Bagge-Hansen, J. R. I. Lee, M. Stadermann, M. M. Biener, S. Dasgupta, L. Shao, R. K. Kalluri, A. V. Hamza, A. Striolo, J. Weissmueller, H. Hahn and T. F. Baumann, 2013: "Interfacial Charge Induced Phenomena in Porous Graphene-based Bulk Materials."
*224th ECS Meeting*, San Francisco CA. - W. M. Berhanu, F. Yasar and U. H. E. Hansmann, 2013: "In Silico cross seeding of Aβ and amylin fibril-like oligomers."
*ACS Chem. Neurosci.*, 4, 1488. - W. M. Berhanu and U. H. E. Hansmann, 2013: "The stability of cylindrin β-barrel amyloid oligomer models — a molecular dynamics study."
*Proteins*, 81, 1542. - W. M. Berhanu, P. Jiang and U. H. E. Hansmann, 2013: "Simulation of folding and association of a home-tetrameric protein complex in an all-atom Go model."
*Phys. Rev. E*, 87, 014701. - A. Berkner, P. H. Hauschildt and E. Baron, 2013: "3D radiative transfer effects in parametrized starspots."
*Astronomy and Astrophysics*, 550, A104. - N. A. Bernhardt, W. M. Berhanu and U. H. E. Hansmann, 2013: "Mutations and cross-seeding of amylin fibril-like oligomers."
*J. Phys. Chem. B*, 117, 16076. - R. Betancur, R. E. Broughton, E. O. Wiley, K. Carpenter, J. A. López, C. Li, N. Holcroft, D. Arcila, M. Sanciangco, J. C. Cureton, F. Zhang, T. Buser, M. Campbell, J. Ballesteros, A. Roa-Varon, S. Willis, W. C. Borden, T. Rowley, P. Reneau, D. Hough, G. Lu, T. Grande, G. Arratia and G. Ortí, 2013: "The tree of life and a new classification of bony fishes."
*Plos Currents — Tree of Life*, doi:10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288. - D. J. Bodine, M. R. Kumjian, R. D. Palmer, P. L. Heinselman and A. V. Ryzhkov, 2013: "Tornado Damage Estimation Using Polarimetric Radar."
*Weather and Forecasting*, 28, 139-158. - E. S. Bridge, J. F. Kelly, A. Contina, R. M. Gabrielson, R. B. MacCurdy and D. W. Winkler, 2013: "Advances in tracking small migratory birds: A technical review of light-level geolocation."
*Journal of Field Ornithology*, 84, 212-137. - R. E. Broughton, R. Betancur, C. Li, G. Arratia and G. Ortí, 2013: "Multilocus phylogenetic analysis reveals the pattern and tempo of bony fish evolution."
*Plos Currents — Tree of Life*, doi:10.1371/currents.tol.2ca8041495ffafd0c92756e75247483e. - K. Bui, B. P. Grady, M. C. Saha and D. V. Papavassiliou, 2013: "Effect of carbon nanotube persistence length on heat transfer in nanocomposites: A simulation approach."
*Applied Physics Letters*, 102 (20), article no. 203116. - D. R. Buttaccio, N. D. Lange, S. Hahn, R. P. Thomas and E. J. Davelaar, 2013: "Explicit awareness supports conditional visual search in the retrieval guidance paradigm." In M. Knauff, M. Pauen, N. Sebanz and I. Wachsmuth, eds.,
*Proceedings of the 35th Annual Conference of the Cognitive Science Society*, Cognitive Science Society. - A. Cadena and R. M. Slatt, 2013: "Seismic and sequence stratigraphic interpretation of the area of influence of the Magdalena Submainre Fan, offshore northern Colombia."
*Interpretation J.*, 1 (1). - S. Cai, L. Du, A. L. Gerea, J. B. King, J. You and R. H. Cichewicz, 2013: "Spiro fused diterpene-indole alkaloids from a creek-bottom-derived Aspergillus terreus."
*Org Lett.*, 15 (16), 4186-9. DOI:10.1021/ol401891z. Epub 2013 Aug 7. - C. Carley, B. McKinney, L. Sells, C. Zhao and H. Neeman, 2013: "Using a Shared, Remote Cluster for Teaching HPC."
*Proc. IEEE CLUSTER 2013*. DOI: 10.1109/CLUSTER.2013.6702630. - B. Chen, X. Dai, E. Baron and R. Kantowski, 2013: "Effects of Kerr Strong Gravity on Quasar X-Ray Microlensing."
*The Astrophysical Journal*, 769, 131. - B. Chen, X. Dai and E. Baron, 2013: "Inclination-dependent Active Galactic Nucleus Flux Profiles from Strong Lensing of the Kerr Spacetime."
*The Astrophysical Journal*, 762, 122. - J. Cheng, 2013: "Assimilation of Attenuated Data from X-band Network Radars Using Ensemble Kalman Filter." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- B. L. Cheong, R. Kelley, R. D. Palmer, Y. Zhang, M. Yeary and T.-Y. Yu, 2013: "PX-1000: A Software-Defined Polarimetric X-band Weather Radar and Time-Frequency Multiplexed Waveform for Blind Range Mitigation."
*IEEE Transactions on Instrumentation and Measurements*, 62 (11), 3064-3072. - C.-H. Chuang and Y. Wang, 2013: "Using Multipoles of the Correlation Function to Measure H(z), D_A(z), and β(z) from SDSS Luminous Red Galaxies."
*Monthly Notices of the Royal Astronomical Society*, 431, 2634. arXiv:1205.5573. - C.-H. Chuang and Y. Wang, 2013: "Modeling the Anisotropic Two-Point Galaxy Correlation Function on Small Scales and Improved Measurements of H(z), D_A(z), and β(z) from the Sloan Digital Sky Survey DR7 Luminous Red Galaxies."
*Monthly Notices of the Royal Astronomical Society*, 435, 255. arXiv:1209.0210. - R. Cintineo, J. A. Otkin, M. Xue and F. Kong, 2013: "Evaluating the Accuracy of Planetary Boundary Layer and Cloud Microphysical Parameterization Schemes in Convection-Permitting Ensemble Forecasts using Synthetic GOES-13 Satellite Observations.
*Mon. Wea. Rev.*, accepted. - A. J. Clark, R. G. Bullock, T. L. Jensen, M. Xue and F. Kong, 2013: "Application of object-based time-dependent diagnostics for tracking precipitation systems in convection-allowing models."
*Weather and Forecasting*, submitted. - A. J. Clark, J. Gao, P. T. Marsh, T. Smith, J. S. Kain, J. Correia Jr., M. Xue and F. Kong, 2013: "Tornado Pathlength Forecasts from 2010 to 2011 Using Ensemble Updraft Helicity."
*Weather and Forecasting*, 28, 387-407. - D. R. Cole, Ok Salim, A. Phan, G. Rother, A. Striolo and L. Vlcek, 2013: "Carbon-Bearing Fluids at Nanoscale Interfaces."
*Procedia Earth and Planetary Science*, 7, 175-178. - M. C. Coniglio, J. Correia Jr., P. T. Marsh and F. Kong, 2013: "Verification of convection-allowing WRF model forecasts of the planetary boundary layer using sounding observations."
*Weather and Forecasting*, 28, 842-862. - A. Contina, E. S. Bridge, N. E. Seavy, J. M. Duckles and J. F. Kelly, 2013: "Using Geologgers to Investigate Bimodal Isotope Patterns in Painted Buntings (Passerina Ciris)."
*The Auk*, 130 (2), 265-272. - D. Dasari, G. F. Shou and L. Ding, 2013: "Investigation of Independent Components based EEG Metrics for Mental Fatigue in Simulated ATC Task."
*Proc. of the 6th International IEEE EMBS Neural Engineering Conference*, 1331-1334. - L. Ding, M. Zhu and K. Liao, 2013: "Wavelet Based Sparse Source Imaging Technique."
*Proc. of Annual Int. Conf. of IEEE-EMBS*, 5418-5421. - J. Dong, X. Xiao, B. Chen, N. Torbick, C. Jin, G. Zhang and C. Biradar, 2013: "Mapping deciduous rubber plantations through integration of PALSAR and multi-temporal Landsat imagery."
*Remote Sensing of Environment*, 134, 392-402. - J. Dong, G. Zhang, Y. Zhang and X. Xiao, 2013: "Reply to Wang et al.: Snow cover and air temperature affect the rate of changes in spring phenology in the Tibetan Plateau."
*Proceedings of the National Academy of Sciences of the United States of America*, published ahead of print June 5 2013. DOI:10.1073/pnas.1306813110. - L. Du, A. J. Robles, J. B. King, D. R. Powell, A. N. Miller, S. L. Mooberry and R. H. Cichewicz, 2013: "Crowdsourcing natural products discovery to access uncharted dimensions of fungal metabolite diversity."
*Angew Chem Int Ed Engl.*, 53 (3), 804-809. DOI:10.1002/anie.201306549. Epub 2013 Nov 27. - J. Duda, X. Wang, F. Kong and M. Xue, 2013: Using Varied "Microphysics to Account for Uncertainty in Warm-Season QPF in a Convection-Allowing Ensemble."
*Mon. Wea. Rev.*, submitted. - A. O. Fierro and L. M. Leslie, 2013: "Links between Central Western Australian rainfall variability and large-scale climate drivers."
*Journal of Climate*, 6, 2222-2246. - A. O. Fierro, E. R. Mansell, C. Ziegler and D. R. MacGorman, 2013: "The implementation of an explicit charging and discharge lightning scheme within the WRF-ARW model: Benchmark simulations with a continental squall line, a tropical cyclone and a winter storm."
*Monthly Weather Review*, 141, 2390-2415. - A. O. Fierro and L. M. Leslie, 2013: "Relationships between southeast Australian temperature anomalies and large-scale climate drivers."
*Journal of Climate*, conditionally accepted. - J. Gao, M. Xue and D. J. Stensrud, 2013: "The development of a hybrid EnKF-3DVAR algorithm for storm-scale data assimilation."
*Adv. Meteor. 2013*, 1-12. DOI:10.1155/2013/512656. - J. Gao, T. M. Smith, D. J. Stensrud, C. Fu, K. Calhoun, K. L. Manross, J. Brogden, V. Lakshmanan, Y. Wang, K. W. Thomas, K. Brewster and M. Xue, 2013: "A realtime weather-adaptive 3DVAR analysis system for severe weather detections and warnings with automatic storm positioning capability."
*Wea. Forecasting*, 28, 727-745. - N. A. Gasperoni, M. Xue, R. D. Palmer, J. Gao, B. L. Cheong, D. Michaud and D. Bodine, 2013: "Sensitivity of Convective Initiation Prediction to Near-Surface Moisture when Assimilating Radar Refractivity: Impact Tests using OSSEs."
*J. Atmos. Oceanic Technol.*, 30, 2281-2302. DOI:10.1175/JTECH-D-12-00038.1 - G. Ge, J. Gao and M. Xue, 2013: "Impact of a diagnostic pressure equation constraint on tornadic supercell thunderstorms forecasts initialized using 3DVAR radar data assimilation."
*Adv. Meteor. 2013*, 1-12. DOI:10.1155/2013/947874. - G. Ge, J. Gao and M. Xue, 2013: "Impacts of Assimilating Measurements of Different State Variables with a Simulated Supercell Storm and Three-Dimensional Variational Method."
*Mon. Wea. Rev.*, 141, 2759-2777. DOI:http://dx.doi.org/10.1175/MWR-D-12-00193.1. - S. E. Giangrande, S. Collis, J. Straka, A. Protat, C. Williams and S. Krueger, 2013: "A Summary of Convective-Core Vertical Velocity Properties Using ARM UHF Wind Profilers in Oklahoma."
*J. Appl. Meteor. Climato.*, 52, 2278-2295. DOI: 10.1175/JAMC-D-12-0185.1 (4 citations "Web of Science") - R. Gordnier, C. Chimakurthi and P. J. Attar, 2013: "High-fidelity aeroelastic computations of a flapping wing with spanwise flexibility."
*Journal of Fluids and Structures*, 40, 86-104. - L. Guest, 2013: "A subsurface study of the Marmaton in Beaver County, Oklahoma." unpublished M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma.
- S. Guo, B. Zhang, T. Lin and K. J. Marfurt, 2013: "Azimuthal AVO Gradient Anisotropic Analysis on Prediction of Fractures on Barnett Shale.
*Unconventional Resources Technology Conference*, Denver CO, 12-14 August 2013, 1890-1899. - Y. Guo, S. H. Hosseini, C. Y. Tang, J. N. Jiang and R. G. Ramakumar, 2013: "An Approximate Wind Turbine Control System Model for Wind Farm Power Control."
*IEEE Transactions on Sustainable Energy*, 4 (1), 262-274. - Y. Guo, W. Wang, C. Y. Tang, J. N. Jiang and R. G. Ramakumar, 2013: "Model Predictive and Adaptive Wind Farm Power Control."
*Proc. American Control Conference*, 2896-2903. - S. Hachinger and 21 colleagues [including E. Baron], 2013: "The UV/optical spectra of the Type Ia supernova SN 2010jn: a bright supernova with outer layers rich in iron-group elements."
*Monthly Notices of the Royal Astronomical Society*, 429, 2228-2248. - T. A. Ho, R. K. Kalluri, M. M. Biener, J. Biener and A. Striolo, 2013: "Partition and Structure of Aqueous NaCl and CaCl
_{2}Electrolytes in Carbon-Slit Electrodes."*J. Phys. Chem. C*, 117, 13609-13619. - T. A. Ho, R. K. Kalluri, M. M. Biener, J. Biener and A. Striolo, 2013: "Partition and Structure of Aqueous NaCl and CaCl2 Electrolytes in Carbon-Slit Electrodes."
*J. Phys. Chem. C*, 117 13609-13619. - T. A. Ho and A. Striolo, 2013: "Capacitance Enhancement via Electrode Patterning."
*J. Chem. Phys.*, 139, 204708. - T. A. Ho and A. Striolo, 2013: "Enhancing the Performance of Super-Capacitors by Engineering Electrodes and Electrolytes."
*AIChE Annual Meeting*, San Francisco CA. - T. A. Ho and A. Striolo, 2013: "Polarizability Effects in Molecular Dynamics Simulations of the Graphene-Water Interface."
*J. Chem. Phys.*, 138, 054117/1-9. - M. Hu, D. P. Linder, M. Buongiorno Nardelli and A. Striolo, 2013: "Hydrogen Adsorption on Platinum-Gold Nanoparticles: A Density Functional Theory Study."
*J. Phys. Chem. A*, 117, 15050-15060. - Y. Hu, D. Devegowda, A. Striolo, T. A. Ho, A. Phan, F. Civan and R. F. Sigal, 2013: "Microscopic Dynamics of Water and Hydrocarbons in Shale Organic Pores with Mixed Wettability."
*SPE Unconventional Resources Conference*, Calgary Canada, paper SPE 167234. - Y. Hu, D. Devegowda, A. Striolo, T. A. Ho, A. Phan, F. Civan and R. Sigal, 2013: "A Pore Scale Study Describing the Dynamics of Slickwater Distribution in Shale Gas Formations Following Hydraulic Fracturing."
*SPE Unconventional Gas Conference*, paper SPE 164552, The Woodlands TX. - Y. Hu, D. Devegowda, A. Striolo, A. Phan, T. A. Ho, F. Civan and R. F. Sigal, 2013: "A Pore Scale Study of Slickwater Systems in Shale Reservoirs: Implications for Frac-Water Distribution and Produced Water Salinity."
*Unconventional Resources Technology Conference*, Denver CO, paper URTeC 1579803. - C. H. Im, L. Ding, Y. W. Wang and S. P. Kimk 2013:
*Computational Methods in Neuroengineering. Computational and Mathematical Methods in Medicine*, vol. 2013, article ID 617347, 2 pages. DOI:10.1155/2013/617347 (editorial). - B. Isom, R. Palmer, R. Kelley, J. Meier, D. Bodine, M. Yeary, B.-L. Cheong, Y. Zhang, T.-Y. Yu and M. I. Biggerstaff, 2013: "The Atmospheric Imaging Radar: Simultaneous Volumetric Observations Using a Phased Array Weather Radar."
*Journal of Atmospheric and Oceanic Technology*, 30 (4), 655-675. - D. Jack, P. H. Hauschildt and E. Baron, 2013: "Time-dependent radiative transfer with PHOENIX (Corrigendum)."
*Astronomy and Astrophysics*, 549, 1. - P. Jiang, F. Yasar and U. H. E. Hansmann, 2013: "Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics."
*J. Chem. Theor. Comput.*, 9, 3816. - A. Johnson, X. Wang, F. Kong and M. Xue, 2013: "Object-based evaluation of the impact of horizontal grid spacing on convection-allowing forecasts."
*Mon. Wea. Rev.*, 141, 3413-3425. - C. Jung, C. H. Sun and M. Yuan, 2013: "An Ontology-enabled Framework for a Geospatial Problem-Solving Environment."
*Computer, Environment, and Urban Systems*, 38, 45-57. - R. K. Kalluri, M. M. Biener, M. E. Suss, M. D. Merrill, M. Stadermann, J. D. Santiago, T. F. Baumann, J. Biener and A. Striolo, 2013: "Unraveling the Potential and Pore-Size Dependent Capacitance of Slit-Shaped Graphitic Carbon Pores in Aqueous Electrolytes."
*Physical Chemistry Chemical Physics*, 15, 2309-2320. - S. Karimkashi et al., 2013: "Cylindrical Polarimetric Phased Array Radar: Design and Analysis of a Frequency Scanning Antenna Array."
*IEEE International Symposium on Phased Array Systems & Technology*, Waltham MA. - S. Karimkashi and G. Zhang, 2013: "A Dual-Polarized Frequency Scanning Cylindrical Array Antenna with High Isolation for Weather Measurements."
*Applied Computational Electromagnetics (ACES)*, Monterey CA. - S. Karimkashi and G. Zhang, 2013: "A Dual-Polarized Series-Fed Microstrip Antenna Array with Very High Polarization Purity for Weather Measurements."
*IEEE Trans. Antennas Propag.*, 61 (10). - S. Karimkashi, G. Zhang and A. A. Kishk, 2013: "A Dual-Polarization Frequency Scanning Array Antenna for Weather Radar Applicationa."
*The 7th European Conference on Antennas and Propagation*, Gothenburg, Sweden. - S. Karimkashi, G. Zhang, A. A. Kishk, W. Bocangel, R. Kelly, J. Meier and R. Palmer, 2013: "Dual-Polarization Frequency Scanning Microstrip Array Antenna for Weather Measurements."
*IEEE Trans. Antennas Propag.*, 61 (11), 5444-5452. - J. F. Kelly, P. B. Chilson, E. S. Bridge and W. F. Frick, 2013: "Energetics of an Abundant Aerial Insectivore, the Purple Martin."
*PLoS ONE*, 8 (9), e76616. DOI: 10.1371/journal.pone.0076616. - Y. L. Kogan, 2013: "A Cumulus Cloud Microphysics Parameterization for Cloud-Resolving Models."
*J. Atmos. Sci.*, 70, 1423-1436. - D. Konatham, J. Yu, T. A. Ho and A. Striolo, 2013: "Simulation Insights for Graphene-Based Water Desalination Membranes.
*Langmuir*, 29, 11884-11897. Also featured in the cover art of*Langmuir*, 29 (38), September 24 2013. - F. Kong, Y. Zhang, R. Palmer and Y. Bai, 2013: "Wind Turbine Radar Interference Studies by Polarimetric Measurements of a Scaled Model."
*IEEE Transactions on Aerospace and Electronic Systems*, 49, 1589-1600. - L. R. Krumholz, L. Wang, D. A. Beck, T. Wang, M. Hackett, B. Mooney, T. R. Juba, M. J. McInerney, B. Meyer, J. D. Wall and D. A. Stahl, 2013: "Membrane protein complex of APS reductase and Qmo is present in
*Desulfovibrio vulgaris*and*Desulfovibrio alaskensis*."*Microbiology*, 159, 2162-2168. - H. Kuebler, D. Booth, J. Sedlacek and J. P. Shaffer, 2013: "Exploiting Rydberg Atom Surface Phonon Polariton Coupling for Single Photon Subtraction."
*Physical Review A*, 88, 043810. - A. LaBryer, P. J. Attar and P. Vedula, 2013: "A Framework for Optimal Temporal Reduced Order Modeling of Nonlinear Dynamical Systems."
*Journal of Sound and Vibration*, 332, 4, 993-1010. - A. LaBryer, P. J. Attar and P. Vedula, 2013: "Optimal Spatiotemporal Reduced Order Modeling Part I: Proposed Framework."
*Computational Mechanics*, 52, 2, 417-431. - A. LaBryer, P. J. Attar and P. Vedula, 2013: "Optimal Spatiotemporal Reduced Order Modeling Part II: Application to a Nonlinear Beam."
*Computational Mechanics*, 52, 2, 433-451. - A. LaBryer, P. J. Attar and P. Vedula, 2013: "Characterization of Subgrid-Scale Dynamics for a Nonlinear Beam."
*Computers and Structures*, accepted. - A. LaBryer, P. J. Attar and P. Vedula, 2013: "Optimal spatiotemporal reduced order modeling of Burgers equation with large-amplitude disturbances."
*Proc. 51st Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition*, Grapevine TX, AIAA paper 2013-0255. - S. Lakshmivarahan, J. M. Lewis and D. Phan, 2013: "Data Assimilation as a Problem in Optimal Tracking: Application of Pontryagin's Minimum Principle to Atmospheric Science."
*J. Atmos. Sci.*, 70, 1257–1277. DOI: 10.1175/JAS-D-12-0217.1 - N. D. Lange, R. P. Thomas, D. R. Buttacio, D. A. Illingworth and E. J. Davelaar, 2013: "Working memory dynamics bias the generation of beliefs: The influence of data presentation rate on hypothesis generation."
*Psychonomic Bulletin & Review*, (20) 1, 171-176. DOI: 10.3758/s13423-012-0316-9. - N. D. Lange, E. J. Davelaar and R. P. Thomas, 2013: "Data Acquisition Dynamics and Hypothesis Generation."
*Cognitive Systems Research*, Special Issue: Best of International Conference on Cognitive Modeling, invited submission. DOI: 10.1016/j.cogsys.2012.12.006. - N. D. Lange, R. P. Thomas, D. R. Buttaccio and E. J. Davelaar, 2013: "Snapshots of working memory: Using early eye movements to capture temporal dynamics." In M. Knauff, M. Pauen, N. Sebanz and I. Wachsmuth, eds.,
*Proceedings of the 35th Annual Conference of the Cognitive Science Society*, Cognitive Science Society. - T. Le, A. Phan, D. R. Cole and A. Striolo, 2013: "CO2-Propane Mixtures in Silica Pores: Relation between Structure and Dynamics."
*AIChE Annual Meeting*, San Francisco CA. - L. Li, 2013: "Database Vertical Partitioning on Both Single Computers and Cluster Computers." M.S. thesis (advisor L. Gruenwald), School of Computer Science, University of Oklahoma.
- K. Liao, R. Xiao, J. M. Gonzalez and L. Ding, 2013: "Decoding individual finger movements of one hand using human EEG signals."
*PLoS ONE*, under revision. - K. Liao, M. Zhu and L. Ding, 2013: "A New Wavelet Transform to Sparsely Represent Cortical Current Densities for EEG/MEG Inverse Problems."
*Computer Methods and Programs in Biomedicine*, 111 (2), 376–388. DOI: 10.1016/j.cmpb.2013.04.015. - A. V. Lietuvninkas, V. K. Howe, H. H. Sigmarsson and J. E. Ruyle, 2013: "Investigation of Conformal Antenna Design Limits."
*Proc. 2013 Antenna Applications Symposium*, Allerton Park, Monticello IL. - P. Liu and K. M. Nicholas, 2013: "Mechanism of sulfite-driven, MeReO3-catalyzed deoxydehydration of glycols."
*Organometallics*, 32 (6), 1821-1831. - P. Lundqvist, S. Mattila, J. Sollerman, C. Kozma, E. Baron, N. L. J. Cox, C. Fransson, B. Leibundgut and J. Spyromilio, 2013: "Hydrogen and helium in the spectra of Type Ia supernovae."
*Monthly Notices of the Royal Astronomical Society*, 1999. - X.-C. Luu, J. Yu and A. Striolo, 2013: "Ellipsoidal Janus Nanoparticles Simulated at Water/Oil Interfaces."
*AIChE Annual Meeting*, San Francisco CA. - X.-C. Luu, J. Yu and A. Striolo, 2013: "Ellipsoidal Janus Nanoparticles Adsorbed at Water-Oil Interface: Some Evidence of Emergent Behavior."
*J. Phys. Chem. B*, 117, 13922-13929. - X.-C. Luu, J. Yu and A. Striolo, 2013: "Nanoparticles Adsorbed at the Water/Oil Interface: Coverage Effects on Structure and Diffusion."
*Langmuir*, 29, 7221-7228. - E. R. Mansell and C. L. Ziegler, 2013: "Aerosol Effects on Simulated Storm Electrification and Precipitation in a Two-Moment Bulk Microphysics Model."
*J. Atmos. Sci.*, 70 (7), 2032-2050. DOI: http://dx.doi.org/10.1175/JAS-D-12-0264.1 - A. McGovern, N. Troutman, R. A. Brown, J. K. Williams and J. Abernethy, 2013: "Enhanced Spatiotemporal Relational Probability Trees and Forests."
*Data Mining and Knowledge Discovery*, 26 (2), 398-433. DOI: 10.1007/s10618-012-0261-2. - V. Melnikov and J. M. Straka, 2013: "Axis Ratios and Flutter Angles of Cloud Ice Particles: Retrievals from Radar Data."
*J. Atmos. Oceanic Technol.*, 30, 1691–1703. DOI: 10.1175/JTECH-D-12-00212.1 - C. Molinares, 2013: "Stratigraphy and palynomorphs composition of the Woodford Shale in the Wyche Farm Shale pit, Pontotoc County, Oklahoma." unpublished M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma.
- F. Nai, S. Torres and R. Palmer, 2013: "On the Mitigation of Wind Turbine Clutter for Weather Radars Using Range-Doppler Spectral Processing."
*IET Radar, Sonar & Navigation*, 7 (2), 178-190. - E. Natenberg, J. Gao, M. Xue and F. H. Carr, 2013: "Multi-Doppler radar analysis and forecast of a tornadic thunderstorm using a 3D variational data assimilation technique and ARPS model."
*Adv. Meteor. 2013*, 1-18. DOI:10.1155/2013/281695. - H. Neeman, D. Brunson, J. Deaton, Z. Gray, E. Huebsch, D. Gentis and D. Horton, 2013: "The Oklahoma Cyberinfrastructure Initiative."
*Proc. XSEDE'13*, article 70. DOI: 10.1145/2484762.2484793. - Q. T. Nguyen and D. V. Papavassiliou, 2013: "Turbulent plane Poiseuille-Couette flow as a model for fluid slip over superhydrophobic surfaces."
*Phys. Rev. E*, 88 (6), 063015. DOI:10.1103/PhysRevE.88.063015. - O. Ozcelik, P. J. Attar, M. C. Altan and J. W. Johnston, 2013: "Experimental and Numerical Characterization of the Structural Dynamics of Flapping Beams."
*Journal of Sound and Vibration*, 332, 21, 5393-5416. - A. Phan, D. R. Cole and A. Striolo, 2013: "Liquid Ethanol Simulated on Crystalline Alpha Alumina."
*J. Phys. Chem. B*, 117, 3829-3840. - A. Phan, D. R. Cole and A. Striolo, 2013: "Preferential Adsorption from Liquid Ethanol-Water Mixtures in Alumina Pores."
*AIChE Annual Meeting*, San Francisco CA. - B. J. Putnam, M. Xue, Y. Jung, N. A. Snook and G. Zhang, 2013: "The analysis and prediction of microphysical states and polarimetric variables in a mesoscale convective system using double-moment microphysics, multi-network radar data, and the ensemble Kalman filter."
*Mon. Wea. Rev.*, in press. - M. Razi, P. J. Attar and P. Vedula, 2013: "Uncertainty Quantification for Multidimensional Dynamical Systems Based on Adaptive Numerical Solution of Liouville Equation."
*54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference*. - M. Razi, P. J. Attar and P. Vedula, 2013: "Adaptive Numerical Solution of Liouville Equation For Uncertainty Quantification of Multidimensional Dynamical Systems."
*Proc. 54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference and Co-located Events*, Boston MA, AIAA paper 2013-1536. - M. B. Richman, A. E. Mercer, L. M. Leslie, C. A. Doswell III and C. M. Shafer, 2013: "High dimensional data compression using principal components."
*Open J. Statistics*, 3, 356-366. - A. Schenkman, M. Xue and M. Hu, 2013: "Tornadogenesis in a High-Resolution Simulation of the 8 May 2003 Oklahoma City Supercell."
*J. Atmos. Sci.*, in press. - R. S. Schumacher, A. J. Clark, M. Xue and F. Kong, 2013: "Factors influencing the development and maintenance of nocturnal heavy-rain-producing convective systems in a storm-scale ensemble."
*Mon. Wea. Rev.*, 141, 2778-2801. - J. Sedlacek, A. Schwettmann, H. Kuebler and J. P. Shaffer, 2013: "Atom Based Vector Microwave Electrometry Using Rubidium Rydberg Atoms in a Vapor Cell."
*Physical Review Letters*, 111, 063001. - A. Serna-Bernal, 2013: "Geological characterization of the Woodford Shale, McAlister Cemetary Quarry, Criner Hills, Oklahoma." unpublished M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma.
- K. Shimose, M. Xue, R. D. Palmer, J. Gao, B. L. Cheong and D. J. Bodine, 2013: "Two-dimensional variational analysis of near-surface moisture from simulated radar refractivity-related phase change observations."
*Adv. Atmos. Sci.*, 30 (2), 291-305. - J. R. Shipley, A. Contina, N. Batbayar, E. S. Bridge, A. T. Peterson and J. F. Kelly, 2013: "Niche conservatism and disjunct populations: A case study with Painted Buntings (Passerina ciris)."
*Auk*, 130, 476-486.

**Featured on the journal cover.** - G. F. Shou and L. Ding, 2013: "Frontal Theta EEG Dynamics in a Real-world Air Traffic Control Task."
*Proc. of Annual Int. Conf. of IEEE-EMBS*, 5494-5497. - G. F. Shou and L. Ding, 2013: "Ongoing EEG Oscillatory Dynamics Suggesting Evolution of Mental Fatigue in a Color-word Matching Stroop Task."
*Proc. of the 6th International IEEE EMBS Neural Engineering Conference*, 1339-1342. - J. Simons, M. Yuan, C. Carollo, M. Vega-Cendejas, T. Shirley, M. Palomares, P. Roopnarine, L. Arenas, A. Holmes, C. Mazza, R. Hertog, D. Reed and J. Poelen, 2013: "Building Fisheries Trophic Interaction Database for Management and Modeling Research In the Gulf of Mexico Large Marine Ecosystem."
*Bulletin of Marine Science*, 89 (1). DOI:10.5343/bms.2011.1130. - T. M. Smith, J. Gao, K. M. Calhoun, D. J. Stensrud, K. L. Manross, K. L. Ortega, C. Fu, D. M. Kingfield, K. L. Elmore, V. Lakshmanan and C. Riedel, 2013: "Performance of a real-time 3DVAR analysis system in the Hazardous Weather Testbed."
*Wea. Forecasting*, accepted. - C. Srinivasan and D. V. Papavassiliou, 2013: "Heat transfer scaling for wall bounded turbulent flows."
*Applied Mechanics Review*, 65 (3), article 031002. DOI::10.1115/1.4024428. - D. R. Stratman, M. C. Coniglio, S. E. Koch and M. Xue, 2013: "Use of multiple verification methods to evaluate forecasts of convection from hot- and cold-start convection-allowing models."
*Wea. Forecasting*, 28, 119-138. - A. Striolo, 2013: "Solid-Water Interfaces: Fundamental Observations to Enhance Practical Devices."
*AIChE Annual Meeting*, San Francisco CA. - A. Striolo, 2013: "Understanding Pickering Emulsions Using Multi-Scale Simulations."
*AIChE Annual Meeting*, San Francisco CA. - A. Striolo, A. Phan and D. R. Cole, 2013: "Ethanol-Water Mixtures Simulated on a-Alumina."
*ACS 245th National Meeting*, New Orleans LA. - M. Suttipong, B. P. Grady and A. Striolo, 2013: "Self-Assembly of Aqueous Surfactants on Patterned Surfaces."
*Gordon Research Conference on 'Science of Adhesion,'*Mount Holyoke College MA. - M. Suttipong, B. P. Grady and A. Striolo, 2013: "Self-Assembled Aqueous Surfactants on Patterned Surfaces: Insights from Coarse-Grained Simulations."
*AIChE Annual Meeting*, San Francisco CA. - M. Suttipong, N. R. Tummala, A. Striolo, C. Silvera Batista and J. Fagan, 2013: "Salt-Specific Effects in Aqueous Dispersions of Carbon Nanotubes."
*Soft Matter*, 9, 3712-3719. Also featured in the cover art of*Soft Matter*, 9 (14), April 14 2013. - T. B. Trafalis, I. Adrianto, M. B. Richman and S. Lakshmivarahan, 2013: "Machine-learning classifiers for imbalanced tornado data."
*Computational Management Science*, 11, 403-418. - S. Wang, M. Xue, A. D. Schenkman and J. Min, 2013: "An iterative ensemble square root filter and tests with simulated radar data for storm scale data assimilation."
*Quart. J. Roy. Meteor. Soc.*DOI: 10.1002/qj.2077. - S. Wang, M. Xue and J. Min, 2013: "A four-dimensional asynchronous ensemble square-root filter (4DEnSRF) and tests with simulated radar data."
*Quart. J. Roy. Meteor. Soc.*, 139, 805-819. - Y. Wang, Y. Jung, T. A. Supinie and M. Xue, 2013: "A hybrid MPI/OpenMP parallel algorithm and performance analysis for an ensemble square root filter suitable for dense observations."
*J. Atmos. Ocean. Tech.*, 30, 1382-1397. - Y. Wu, D. Devegowda, F. Civan, A. Striolo and R. Sigal, 2013: "Microscopic Dynamics of Water and Hydrocarbon in Shale-Kerogen Pores of Potential Mixed Wettability."
*2013 Unconventional Resources Conference*, Calgary Canada. - R. Xiao and L. Ding, 2013: "Evaluation of EEG Features in Decoding Individual Finger Movements from One Hand."
*Computational and Mathematical Methods in Medicine*, article ID 243257. DOI:10.1155/2013/243257. - R. Xiao, K. Liao and L. Ding, 2013: "Towards Noninvasive BCI by Decoding Individual Finger Movements using EEG."
*Proc. of the Fifth International Brain-Computer Interface Meeting*. - M. Xue, M. Hu and A. Schenkman, 2013: "Numerical prediction of 8 May 2003 Oklahoma City tornadic supercell and embedded tornado using ARPS with assimilation of WSR-88D radar data."
*Wea. Forecasting*, in press. - M. Xue, J. Schleif, F. Kong, K. W. Thomas, Y. Wang and K. Zhu, 2013: "Track and Intensity Forecasting of Hurricanes: Impact of Convection-Permitting Resolution and Ensemble Kalman Filter Initial Condition on 2010 Atlantic Season Forecasts."
*Weather and Forecasting*, in press. - M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang, K. A. Brewster and K. K. Droegemeier, 2013: "Prediction of convective storms at convection-resolving 1-km resolution over continental United States with radar data assimilation: An example case of 26 May 2008."
*Adv. Meteor. 2013*, 1-9. DOI:10.1155/2013/259052. - F. Yasar, A. K. Sieradzan and U. H. E. Hansmann, 2013: "Folding and Self-Assembly of a small Heterotetramer." Submitted.
- H. Yazdani, K. Hatami, T. Hawa and B. P. Grady, 2013: "Atomic-Scale Simulation of Sensor-Enabled Geosynthetics for Health Monitoring of Reinforced Soil Slopes and Embankments."
*Proc. 2013 GeoCongress*, paper #207. - S. You, J. Zhang and L. Gruenwald, 2013: "GPU-based Spatial Indexing and Query Processing Using R-Trees."
*Proc. ACM SIGSPATIAL BigSpatial'13 Workshop*, Orlando FL. - M. Yuan and A. Nara, 2013: "Space-time Analytics of Tracks for the Understanding of Patterns of Life." In
*Space-Time Integration in Geography and GIScience: Research Frontiers in the US and China*, edited by M.-P. Kwan, D. Richardson, D. Wang and C. Zhou, Springer, accepted. - N. Yussouf, J. Gao, D. J. Stensrud and G. Ge, 2013: "The impact of mesoscale environmental uncertainty on the prediction of a tornadic supercell storm using ensemble data assimilation approach."
*Adv. Meteor. 2013*, 1-15. DOI:10.1155/2013/731647. - S. E. Yuter, M. A. Miller, M. D. Parker, P. M. Markowski, Y. P. Richardson, H. E. Brooks and J. M. Straka, 2013: Comment on "Why do tornados and hailstorms rest on weekends?"
*J. Geophy. Res.*, 118, 1–7. (2 citations "Web of Science") - B. Zhang, K. Zhang, S. Guo and K. J. Marfurt, 2013: "Nonstretching NMO correction of prestack time-migrated gathers using a matching-pursuit algorithm."
*Geophysics*, 78 (1), U9-U18. - G. Zhang, J. Dong, Y. Zhang and X. Xiao, 2013: "Reply to Shen et al.: No evidence to show non-growing season NDVI affects spring phenology trend in the Tibetan Plateau over the last decade."
*Proceedings of the National Academy of Sciences of the United States of America*, published ahead of print May 9 2013. DOI:10.1073/pnas.1305593110. - G. Zhang, Y. Zhang, J. Dong and X. Xiao, 2013: "Green-up dates in the Tibetan Plateau have continuously advanced from 1982 to 2011."
*Proceedings of the National Academy of Sciences of the United States of America*, 110, 11, 4309-4314. - Y. Zhang, Y. Hong, J. J. Gourley, X.-G. Wang, J. Gao, H. Vergara and B. Yong, 2013: "Assimilation of Passive Microwave Streamflow Signals for Improving Flood Forecasting: A First Study in Okavango River Basin, Africa."
*IEEE Journal of Special Topics in Applied Earth Observations and Remote Sensing*, 6, 2375-2390. DOI:10.1109/JSTARS.2013.2251321. - M. Zhu, 2013: "EEG/MEG sparse source imaging and its application in epilepsy." Ph.D. dissertation (advisor L. Ding), School of Electrical & Computer Engineering, University of Oklahoma. (Recipient of the Oklahoma Center for Neuroscience Travel Award, 2011, and the Robberson Conference Presentation Travel Grant, 2012.)
- M. Zhu, W. B. Zhang, D. Dickens and L. Ding, 2013: "Multiple penalized sparse source imaging in estimating current sources from MEG."
*NeuroImage*, accepted. - M. Zhu, W. B. Zhang, D. Dickens and L. Ding, 2013: "Wavelet-based Sparse Source Imaging in Localizing Epileptic Sources for Partial Epilepsy."
*Proc. of the 6th International IEEE EMBS Neural Engineering Conference*, 537-540. - M. Zhu, W. B. Zhang, D. L. Dickens, J. A. King and L. Ding, 2013: "Sparse MEG Source Imaging for Reconstructing Dynamic Epileptic Sources of Interictal Spikes."
*Journal of Clinical Neurophysiology*, 30 (4), 313-328.

## 2012

**Publications Facilitated by OU Research IT**

- E. K. Abalo, K. A. Milton and L. Kaplan, 2012: "Scalar Casimir Energies of Tetrahedra." (talk at Quantum Field Theory Under the Influence of External Conditions, Benasque, Spain)
*Int. J. Mod. Phys. Conf. Ser.*, 14, 230. arXiv:1112.0079. DOI: 10.1142/S2010194512007350. - E. K. Abalo, K. A. Milton and L. Kaplan, 2012: "Scalar Casimir Energies of Tetrahedra and Prisms."
*J. Phys. A 45*, 425401, 27 pages, arXiv:1202.0908v2. DOI: 10.1088/1751-8113/45/42/425401. - M. O. Abouelresh and R. M. Slatt, 2012: "Lithofacies and sequence stratigraphy of the Barnett Shale in the east-central Fort Worth Basin, Texas, U.S.A."
*AAPG Bulletin*, 1-22. - I. Y. Akkutlu and E. Fathi, 2012: "Multi-scale Gas Transport in Shales with Local Kerogen Heterogeneities."
*SPE Journal*, 17 (4), 1002-1011. - C. D. Althoff, 2012: "Characterization of depositional megacycles in the Woodford trough of central Oklahoma." M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma. (Held as confidential until July 2014.)
- R. J. Ambrose, R. C. Hartman, M. Diaz-Campos, I. Y. Akkutlu and C. H. Sondergeld, 2012: "Shale Gas-in-Place Calculations Part I: New Pore-Scale Considerations."
*SPE Journal*, 17 (1), 219-229. - J. D. Amorocho, 2012: "Sequence stratigraphy and seismic interpretation of the Upper Devonian-lower Mississippian Woodford Shale in the Cherokee Platform; a characterization approach for unconventional resources." M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma.
- P. J. Attar, W. Romberg, B. Morris, J. Johnston and R. N. Parthasarathy, 2012: "Fluid and Structural Dynamic Response of Membrane Micro Air Vehicles at Moderate to High Angle of Attack."
*AIAA Journal*, 50 (7), 1525-1537. - E. Baron, P. H. Hauschildt, B. Chen, S.Knop, 2012: “A 3D radiative transfer framework: X. Arbitrary Velocity Fields in the Co-moving Frame”.
*Astronomy & Astrophysics, 548*, A67. DOI: 10.1051/004-6361/201219343. - E. T. Baruch, R. M. Slatt and K. J. Marfurt, 2012: "Seismic analysis of the Barnett Shale and Ellenburger unconformity southwest of Newark East Field, Fort Worth Basin, Texas." In J. Breyer (ed),
*Shale Reservoirs: Giant resources for the 21st century*,*AAPG Memoir*, 97, 403-418, in press. - L. Bauerdick, D. Benjamin, K. Bloom, B. Bockelman, D. Bradley, S. Dasu, M. Ernst, R. Gardner, A. Hanushevsky, H. Ito, D. Lesny, P. McGuigan, S. McKee, O. Rind, H. Severini, I. Sfiligoi, M. Tadel, I. Vukotic, S. Williams, F. Wuerthwein, A. Yagil and W. Yang, 2012: "Using Xrootd to Federate Regional Storage."
*J. Phys.: Conf. Ser.*, 396, 042009. - K. K. Beasley and M. A. Nanny, 2012: "Potential Energy Surface for Anaerobic Oxidation of Methane via Fumarate Addition."
*Environmental Science and Technology*. DOI: 10.1021/es3009503. - M. Berenguer, M. Surcel, I. Zawadzki, M. Xue and F. Kong, 2012: "The diurnal cycle of precipitation from continental radar mosaics and numerical weather prediction models. Part II: Intercomparison among numerical models and with nowcasting."
*Mon. Wea. Rev.*, 140, 2689-2705. - W. M. Berhanu and U. H. E. Hansmann, 2012: "Side-chain hydrophobicity and the stability of Aβ(16-22) aggregates."
*Protein Science*, 21, 1837. - W. M. Berhanu and U. H. E. Hansmann, 2012: "Structure and Dynamics of Amyloid-β Segmental Polymorphisms."
*PLoS ONE*, 7 (7), e41479. DOI:10.1371/journal.pone.0041479. - S. Binet, P. Calafiura, M. K. Jha, W. Lavrijsen, C. Leggett, D. Lesny, H. Severini, D. Smith, S. Snyder, M. Tatarkhanov, V. Tsulaia, P. VanGemmeren and A. Washbrook, 2012: "Multicore in production: advantages and limits of the multiprocess approach in the ATLAS experiment."
*J. Phys.: Conf. Ser.*, 368, 012018. - S. Bleckley, J. W. Stone and S. J. Schroeder, 2012: "Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures."
*PLoS ONE*, e52414. - M. Bodenhamer, F. R. Willett, A. J. Suminski, N. G. Hatsopoulos and A. H. Fagg, 2012: "A Feedback Error Learning Approach to Online-Adaptive Decoding for Dynamic Prosthetic Arm Control."
*Proc. of Computational and Systems Neuroscience (Cosyne)*, I-38. - J. Bothwell and M. Yuan, 2012: "A Spatiotemporal GIS Framework Applied to the Analysis of Changes in Temperature Patterns."
*Transactions in GIS*. Preprint online at 10.1111/j.1467-9671.2012.01327.x - K. Bui, H. Nguyen, C. Cedric, A. Striolo and D. V. Papavassiliou, 2012: "Thermal Behavior of Dual-Walled Carbon Nanotubes and Evidence of Thermal Rectification."
*Journal of Physical Chemistry C*, 116, 4449-4454. - Q. Cao, G. Zhang, R. Palmer, M. Knight, R. May and R. Stafford, 2012: "Spectrum-Time Estimation and Processing (STEP) Algorithm for Improving Weather Radar Data Quality."
*IEEE Transactions on Geoscience and Remote Sensing*, 50 (1), 4670-4683. - Q. Cao, G. Zhang, R. D. Palmer and L. Lei, 2012: "Detection and Mitigation of Second Trip Echo in Polarimetric Weather Radar Measurements."
*IEEE Transactions on Geoscience and Remote Sensing*, 50, 1240-1253. - A. B. Cerato, A. Taghavi, K. K. Muraleetharan and G. A. Miller, 2012: "An Educational Module to Demonstrate the Seismic Behavior of in Piles Improved and Unimproved Soft Soils."
*Journal of Professional Issues in Engineering Education and Practice*. DOI: 10.1061/(ASCE)EI.1943-5541.0000112 - A. R. Chain, 2012: "Stratigraphy and composition of the Woodford Shale in depositionally updip and downdip wells, Anadarko Basin, Oklahoma." M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Okalhoma.
- B. Chen, X. Dai, and E. Baron, 2012: “Inclination-Dependent Active Galactic Nucleus Flux Profiles from Strong Lensing of The Kerr Spacetime”.
*Astrophysical Journal, 762*(2). DOI: 10.1088/0004-637X/762/2/122. - A. Clark, J. Gao, P. T. Marsh, T. M. Smith, J. S. Kain, J. Correia Jr., M. Xue and F. Kong, 2012b: "Tornado path length forecasts from 2011 using a 3-dimensional object identification algorithm applied to ensemble updraft helicity."
*Wea. Foreacasting*, conditionally accepted. - A. J. Clark, J. S. Kain, P. T. Marsh, J. Correia Jr., M. Xue and F. Kong, 2012: "Forecasting tornado path lengths using a 3-dimensional object identification algorithm applied to convection-allowing forecasts."
*Weather and Forecasting*, 27, 1090-1113. - A. J. Clark, S. J. Weiss, J. S. Kain, I. L. Jirak, M. Coniglio, C. J. Melick, C. Siewert, R. A. Sobash, P. T. Marsh, A. R. Dean, M. Xue, F. Kong, K. W. Thomas, Y. Wang, K. Brewster, J. Gao, X. Wang, J. Du, D. R. Novak, F. Barthold, M. J. Bodner, J. J. Levit, C. B. Entwistle, T. L. Jensen and J. James Correia, 2012: "An Overview of the 2010 Hazardous Weather Testbed Experimental Forecast Program Spring Experiment."
*Bull. Amer. Meteor. Sci.*, 93, 55-74. - C.-H. Chuang and Y. Wang, 2012: "Measurements of H(z) and D(z) from the Two-Dimensional Two-Point Correlation Function of Sloan Digital Sky Survey Luminous Red Galaxies."
*Monthly Notices of the Royal Astronomical Society*, 426, 226. arXiv: 1102.2251 - C.-H. Chuang, Y. Wang and M. D. P. Hemantha, "A Robust Distance Measurement and Dark Energy Constraints from the Spherically-Averaged Correlation Function of Sloan Digital Sky Survey Luminous Red Galaxies."
*Monthly Notices of the Royal Astronomical Society*, 423, 1474. arXiv:1008.4822 - A. J. Clark, J. S. Kain, P. T. Marsh, J. Correia, Jr., M. Xue and F. Kong, 2012: "Forecasting tornado path lengths using a 3-dimensional object identification algorithm applied to convection-allowing forecasts.
*Weather and Forecasting*, in press. - A. J. Clark, S. J. Weiss, J. S. Kain, I. L. Jirak, M. Coniglio, C. J. Melick, C. Siewert, R. A. Sobash, P. T. Marsh, A. R. Dean, M. Xue, F. Kong, K. W. Thomas, Y. Wang, K. Brewster, J. Gao, X. Wang, J. Du, D. R. Novak, F. Barthold, M. J. Bodner, J. J. Levit, C. B. Entwistle, T. L. Jensen and J. J. Correia, 2012: "An Overview of the 2010 Hazardous Weather Testbed Experimental Forecast Program Spring Experiment."
*Bull. Amer. Meteor. Sci.*, 93, 55-74. - M. C. Coniglio, J. Correia Jr., P. T. Marsh, F. Kong, 2012: "Verification of convection-allowing WRF model forecasts of the planetary boundary layer using sounding observations."
*Weather and Forecasting*, submitted. - D. Crooks, P. Calafiura, R. Harrington, M. Jha, T. Maeno, S. Purdie, H. Severini, S. Skipsey, V. Tsulaia, R. Walker and A. Washbrook, 2012: "Multi-core job submission and grid resource scheduling for ATLAS AthenaMP."
*Proceedings of the 19th International Conference on Computing in High Energy and Nuclear Physics,**J. Phys.: Conf. Ser.*, 396, 032115. - M. R. Dougherty, R. Michael and R. P. Thomas, 2012: "Robust decision making in a nonlinear world."
*Psychological Review*, 119 (2), 321-344. - K. M. Dresback, E. M. Tromble, D. G. Reid, R. L. Kolar, T. C. G. Kibbey, C. A. Blain, R. A. Luettich and C. M. Szpilka, 2012: "Evaluation of Baroclinic ADCIRC Using a Process-Oriented Test Along a Slope." Estuarine and Coastal Modeling”,
*Procedings 12th International Conference*, M. L. Spaulding, eds., American Society of Civil Engineers, 86-98. DOI:10.1061/9780784412411.00005. - H. Fan and A. Striolo, 2012: "Nanoparticles Effects on Water-Oil Interfacial Tension."
*Phys. Rev. E*, 86, 051610/1-11. Impact Factor (2011): 2.255. - H. Fan and A. Striolo, 2012: "Mechanistic Study of Droplets Coalescence in Pickering Emulsions."
*Soft Matter*, 8, 9533-9538. DOI: 10.1039/C2SM26416A. - E. Fathi, A. Tinni and I. Y. Akkutlu, 2012: "Correction to Klinkenberg slip theory for gas flow in nano-capillaries."
*International Journal of Coal Geology*, special issue on Shale, 103, 51-59. DOI:10.1016/j.coal.2012.06.008. - R. Ferdinand, 2012: "Galerkin Finite Element Solution of Groundwater Contaminant Model."
*International Journal of Pure and Applied Mathematics*, 3. - J. Freedman, S. Benjamin, J. Wilczak, M. Marquis, C. Clark, J. Cline, J. W. Zack, J. Manobianco, I. Flores, J. Schroeder, B. Ancell, K. Brewster, S. Basu, K. D. Orwig and V. Banunarayanan, 2012: "The Wind Forecasting Improvement Project: Description and Results from the Southern Study Region."
*Proc. 11th Intl Workshop on Large Scale Integration of Wind Power into Power Systems*, Lisbon, Portugal. - W. F. Frick, P. M. Stepanian, J. F. Kelly, K. W. Howard, C. M. Kuster and P. B. Chilson, 2012: "Climate and Weather Impact Timing of Emergence of Bats."
*PLoS ONE*, 7 (8), e42737. DOI:10.1371/journal.pone.0042737. - B. Friesen, E. Baron, D. Branch, B. Chen, J. T. Parrent, and R. C. Thomas, 2012:”Supernova Resonance-scattering Line Profiles in the Absence of a Photosphere",
*Astrophysical Journal Supplement Series, 203*(1). DOI: 10.1088/0067-0049/203/1/12. - J. E. Funk, R. M. Slatt and D. R. Pyles, 2012: "Quantification of static connectivity between deep-water channels and stratigraphically adjacent architectural elements using outcrop analogs." Amer. Assoc. Petrol. Geol., 96, 277-300.
- J. Gao and D. J. Stensrud, 2012: "Assimilation of reflectivity data in a convective-scale, cycled 3DVAR framework with hydrometeor classification: results from an idealized thunderstorm."
*J. Atmos. Sci.*, 69, 1054-1065. - M. Gately, M. Yeary and C. Yang, 2012: "Algorithm for Jointly Optimizing Quantization and MultipleConstant Multiplication."
*ACM Transactions on Design Automation of Electronic Systems*, 17 (4), article 42, 1-24. - M. Gately, M. Yeary and C. Tang, 2012: "Multiple Real-Constant Multiplication with Improved Cost Model and Greedy and Optimal Searches."
*Proc. IEEE International Symposium on Circuits and Systems (ISCAS)*, 588-591. - G. Ge, J. Gao and M. Xue, 2012a: "Incorporating Diagnostic Pressure Equations as a Weak Constraint into a Storm-Scale Three Dimensional Variational Radar Data Assimilation System — Simulated Data Experiments."
*J. Atmos. Oceanic Technol.*, 29, 1075-1092. - G. Ge, J. Gao and M. Xue, 2012b: "Impact of Different Model Variables on Storm-scale Three-dimensional Variational Data Assimilation."
*Mon. Wea. Rev.*, conditionally accepted. - G. Ge, J. Gao, and M. Xue, 2012: “Diagnostic pressure equation as a weak constraint in a storm-scale three dimensional variational radar data assimilation system”.
*Journal of Atmospheric and Oceanic Technology*,*29*, 1075-1092. DOI: 10.1175/JTECH-D-11-00201.1. - S. Gonzalez de la Hoz, M. Villaplana, Y. Kemp, M. Gasthuber, H. Wolters, D. Benjamin, J. Pardo, A. Pacheco, F. Sanchez, X. Espinal, H. Severini, W. Bhimji, L. Levinson, D. V.n Der Ster and S. Campana, 2012: "Example of shared ATLAS Tier2 and Tier3 facilities."
*Proceedings of the 19th International Conference on Computing in High Energy and Nuclear Physics,**J. Phys.: Conf. Ser.*, 396, 032051. - R. E. Gordnier and P. J. Attar, 2012: "Aeroelastic Simulations of an Aspect Ratio Two Flexible Membrane Wing."
*50th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition*, AIAA, 711. - S. Guo, B. Zhang, K. J. Marfurt and A. Cabrales-Vargas, 2012: "Noise suppression using preconditioned least-squares prestack time migration: Application to the Mississippian Limestone.
*SEG Technical Program Expanded Abstracts 2012*, 1-6. - Y. Guo, 2012: "Control and Optimization of Variable-Speed Wind Turbines and Large-Scale Wind Farms." Ph.D. dissertation (advisor C. Y. Tang), School of Electrical & Computer Engineering, University of Oklahoma.
- B. D. Hirth, J. L. Schroeder, C. C. Weiss, D. A. Smith and M. I. Biggerstaff, 2012: “Research radar analysis of the internal boundary layer over Cape Canaveral, FL during the landfall of Hurricane Frances (2004).”
*Weather Forecasting, 27,*1349-1372. DOI: 10.1175/WAF-D-12-00014.1. - T. Ho, D. Argyris, D. R. Cole and A. Striolo, 2012: "Aqueous NaCl and CsCl Solutions Confined in Crystalline Slit-Shaped Silica Nanopores of Varying Degree of Protonation."
*Langmuir*, 28, 1256-1266. - B. Holland and X. Wang, 2012: "Effects of sequential or simultaneous assimilation of observations and localization methods on the performance of the ensemble Kalman filter."
*Q. J. R. Meteo. Soc.*, in press. - D. Jack, P. H. Hauschildt and E. Baron, 2012: “A 3D radiative transfer framework; IX. Time dependence”.
*Astronomy & Astrophysics*, 546, A39. DOI: 10.1051/0004-6361/201118152. - C. Jin, X. Xiao, L. Merbold, A. Arneth, E. Veenendaal and W. Kutsch, 2013: "Phenology and gross primary production of two dominant savanna woodland ecosystems in Southern Africa."
*Remote Sensing of Environment*, 135, 189-201. - A. Johnson and X. Wang, 2012: "Verification and calibration of neighborhood and object-based probablistic precipitation forecasts from a multi-model convection-allowing ensemble."
*Mon. Wea. Rev.*, in press. - Y. Jung, M. Xue and M. Tong, 2012: "Ensemble Kalman filter analyses of the 29-30 May 2004 Oklahoma tornadic thunderstorm using one- and two-moment bulk microphysics schemes, with verification against polarimetric radar data."
*Mon. Wea. Rev.*, 140, 1457-1475. - J. S. Kain, M. C. Coniglio, J. Correia, A. C. Clark, P. T. Marsh, C. Zeigler, V. Lakshmanan, S. D. Miller, S. R. Dembek, S. J. Weiss, F. Kong and M. Xue, 2012: "Convective Initiation: A Feasibility Study for Probabilistic Forecasts Based on Explicit Numerical Guidance."
*Bulletin of the American Meteorological Society*, 94, 1213-1225. - A. K. Karna and D. V. Papavassiliou, 2012: "Near-wall velocity structures that drive turbulent transport from a line source at the wall."
*Physics of Fluids*, 24, 035102, 21 pages. - J. F. Kelly, J. R. Shipley, P. B. Chilson, K. W. Howard, W. F. Frick and T. H. Kunz, 2012: "Quantifying animal phenology in the aerosphere at a continental scale using NEXRAD weather radars."
*Ecosphere*, 3 (2), 16. - B. J. Killian, 2012: "Sequence stratigraphy of the Woodford Shale, Anadarko Basin, Oklahoma: Implications on regional Woodford target correlation. M.S. thesis (advisor R. Slatt), ConocoPhillips School of Geology & Geophysics, University of Oklahoma.
- Y. L. Kogan and A. Belochitski, 2012: "Parameterization of Cloud Microphysics Based on Full Integral Moments."
*J. Atmos. Sci.*, 69, 2229-2242. - Y. L. Kogan, D. B. Mechem and K. Choi, 2012: "Effects of Sea-Salt Aerosols on Precipitation in Simulations of Shallow Cumulus."
*J. Atmos. Sci.*, 69, 463-483. - D. Konatham, D. V. Papavassiliou and A. Striolo, 2012: "Thermal Boundary Resistance at the Graphene-Graphene Interface Estimated by Molecular Dynamics Simulations."
*Chemical Physics Letters*, 527, 47-50. - J. M. Kurdzo and R. D. Palmer, 2012: "Objective Optimization of Weather Radar Networks for Low-Level Coverage Using a Genetic Algorithm."
*J. Atmos. Oceanic Technol.*, 29, 807-821. DOI: http://dx.doi.org/10.1175/JTECH-D-11-00076.1 - A. LaBryer, P. J. Attar and P. Vedula, 2012: "An optimal prediction method for under-resolved time-marching and time-spectral schemes."
*International Journal for Multiscale Computational Engineering*. DOI:10.1615/IntJMultCompEng.2012004317. - A. Labryer, P. J. Attar and P. Vedula, 2012: "Subgrid-scale dynamics for a nonlinear beam."
*AIAA Paper*, 1711. - S. Lakshmivarahan and J. M. Lewis, 2012: "Nudging Methods: A Critical Overview." Chapter in
*Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications Vol II*, edited by S. K. Park and L. Liang, Springer Verlag. - A. G. Laney, M. Hassan, I. E. Tzanetakis, 2012:"An integrated badnavirus is prevalent in fig germplasm”.
*Phytopathology, 102*(12):1182-9. DOI: 10.1094/PHYTO-12-11-0351. - N. D. Lange, R. P. Thomas and E. J. Davelaar, 2012: "Data acquisition dynamics and hypothesis generation." In: N. Russwinkel, U. Drewitz, J. Dzaack, H. van Rijn and F. Ritter, eds.,
*Proceedings of the 11th International Conference on Cognitive Modelling*, Universitaetsverlag der TU Berlin. - N. D. Lange, R. P. Thomas and E. J. Davelaar, 2012: "Temporal dynamics of hypothesis generation: Influences of data serial order, data consistency, and elicitation timing."
*Frontiers in Psychology: Cognitive Science*, 3: 215. DOI: 10.3389/fpsyg.2012.00215. - N. D. Lange, R. P. Thomas, D. R. Buttaccio and E. J. Davelaar, 2012: "Catching a glimpse of working memory: Top-down capture as a tool for measuring the content of the mind."
*Attention, Perception, & Psychophysics*, 74 (8), 1562-7. DOI: 10.3758/s13414-012-0378-9. - L. L. Lee and G. Pellicane, 2012: "A potential distribution induced mapping of free energies for simple fluids."
*Physica A*, 391, 1942-1951. - L. Lei, G. Zhang, R. J. Doviak, R. Palmer, B. L. Cheong, M. Xue, Q. Cao and Y. Li, 2012: "Multi-lag Correlation Estimators for Polarimetric Radar Measurements in the Presence of Noise."
*Journal of Atmospheric and Oceanic Technology*, 29, 772-795. - J. M. Lewis and S. Lakshmivarahan, 2012: "A Question of Adequacy of observations in Variational Data Assimilation." Chapter in
*Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications Vol II*, edited by S. K. Park and L. Liang, Springer Verlag. - L. Li and L. Gruenwald, 2012: "Autonomous Database Partitioning using Data Mining on Single Computers and Cluster Computers."
*Proc. 16th International Database Engineering and Applicaitons (IDEAS)*. - Y. F. Li, Y. Zheng, G. Jagadeeswaran, and R. Sunkar, 2012: "Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches”.
*Plant Science, 203-204*, 17-24. DOI: 10.1016/j.plantsci.2012.12.014. - K. Liao, M. Zhu, L. Ding, S. Valette, W. B. Zhang and D. Dickens, 2012: "Sparse Imaging of cortical electrical current densities via wavelet transforms."
*Physics in Medicine and Biology*, 57, 6881-6901. - S. McKee, A. Lake, P. Laurens, H. Severini, T. Wlodek, S. Wolff and J. Zurawski, 2012: "Monitoring the US ATLAS Network Infrastructure with perfSONAR-PS."
*J. Phys.: Conf. Ser.*, 396, 042038. - D. B. Mechem, S. E. Yuter and S. P. de Szoeke, 2012: "Thermodynamic and aerosol controls in southeast Pacific stratocumulus."
*J. Atmos. Sci.*, 69, 1250-1266. - J. Meier, R. Kelley, B. Isom, M. Yeary and R. Palmer, 2012: "Leveraging Software Defined Radio Techniques in Multi-Channel Digital Weather Radar Receiver Design."
*IEEE Transactions on Instrumentation and Measurements*, 61 (6), 1571-1582. - A. E. Mercer, C. M. Shafer, C. A. Doswell III, L. M. Leslie and M. B. Richman, 2012: "Synoptic composites of tornadic and nontornadic outbreaks."
*Mon. Wea. Rev.*, 140, 2590-2608. - R. Parthasarathi, N. R. Tummala and A. Striolo, 2012: "Embedded Single Walled Carbon Nanotubes Locally Perturb DOPC Phospholipid Bilayers."
*J. Phys. Chem. B*, 116, 12769-12782. Impact Factor (2011): 3.696. - N. H. Pham, R. S. Voronov, S. B. VanGordon, V. I. Sikavitsas and D. V. Papavassiliou, 2012: "Predicting the stress distribution within scaffolds with ordered architecture."
*Biorheology*49 (4), 235-247. - A. Phan, T. A. Ho, D. R. Cole and A. Striolo, 2012: "Molecular Structure and Dynamics in Thin Water Films at Metal Oxide Surfaces: Magnesium, Aluminum, and Silicon Oxide Surfaces."
*Journal of Physical Chemistry C*, 116, 15962-15973. Impact Factor (2011): 4.805.

Also featured in the cover art of*J. Phys. Chem. C*, volume 116, issue # 30, August 2nd, 2012. - C. K. Potvin, D. Betten, L. J. Wicker, K. L. Elmore and M. I. Biggerstaff, 2012: "3DVAR vs. traditional dual-Doppler wind retrievals of a simulated supercell thunderstorm."
*Mon. Wea. Rev.*, 140, 3487-3494. - B. Poudel and I. E. Tzanetakis, 2012: “Population structure of blackberry chlorotic ringspot virus in the United States”.
*Archives of Virology, 158*(3), 667-72. DOI: 10.1007/s00705-012-1523-4. - B. Poudel, S. Sabanadzovic, J. Bujarski, and I. E. Tzanetakis, 2012: "Population structure of Blackberry yellow vein associated virus, an emerging crinivirus”.
*Virus Research, 169*(1), 272-5. DOI: 10.1016/j.virusres.2012.07.009. - D. E. Resasco, S. Sitthisa, J. Faria, T. Prasomsri and M. P. Ruiz, 2012: "Furfurals as chemical platform for biofuels production." Chapter in
*Heterogeneous Catalysis in Biomass to Chemicals and Fuels*, D. Kubicka and I. Kubickova, eds., ISBN 978-81-308-0462-0, Research Signpost, 155-188. - J. K. Sabet, C. Ghotbi, F. Dorkoosh and A. Striolo, 2012: "Solubilities of Acetaminophen in Supercritical Carbon Dioxide with and without Menthol Cosolvent: Measurement and Correlation."
*Scientia Iranica*, 19, 619-625. - M. S. Sadik and L. Gruenwald, 2012: "In Search of Outliers in Multi-dimensional Data Streams."
*IEEE International Conference on Data Engineering (ICDE)*, submitted. - R. S. Schumacher, A. J. Clark, M. Xue, F. Kong, 2012: "Factors influencing the development and maintenance of nocturnal heavy-rain-producing convective systems in a storm-scale ensemble."
*Mon. Wea. Rev.*, submitted. - A. Schenkman, 2012: "Exploring Tornadogenesis with High-resolution Simulations Initialized with Real Data." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- A. Schenkman, M. Xue and A. Shapiro, 2012: "Tornadogenesis in a simulated mesovortex within a real-data-initialized mesoscale convective system."
*J. Atmos. Sci.*, 69, 3372-3390. - A. Schwettmann, 2012: "Atom Chip Setup for Cold Rydberg Atom Experiments." Ph.D. dissertation (advisor J. Shaffer), Homer L. Dodge Department of Physics & Astronomy, University of Oklahoma.
- J. Sedlacek, A. Schwettmann, H. Kubler, R. Low, T. Pfau and J. P. Shaffer, 2012: "Quantum Assisted Electrometry using Bright Atomic Resonances."
*Nature Physics*, accepted for publication. arXiv:1205:4461. - Z. T. Segele, L. M. Leslie and P. J. Lamb, 2013: "Weather Research and Forecasting Model simulations of extended warm-season heavy precipitation episode over the US Southern Great Plains: data assimilation and microphysics sensitivity experiments."
*Tellus A*, 65, 19599. http://dx.doi.org/10.3402/tellusa.v65i0.19599 - C. M. Shafer, A. E. Mercer, M. B. Richman, L. M. Leslie and C. Doswell III, 2012: "An assessment of areal coverage of severe weather parameters for severe weather outbreak diagnosis."
*Weather and Forecasting*, 27, 809-831. - A. Shapiro, B. Burkholder and E. Fedorovich, 2012: "Analytical and numerical investigation of two-dimensional katabatic flow resulting from local surface cooling."
*Bound.-Layer Meteor.*, 145, 249-272. - C. S. Sheik, T. W. Mitchell, F. Zakria Rizvi, Y. Rehman. M. Faisal, S. Hasnain, M. J. McInerney and L. R. Krumholz, 2012: "Exposure of soil microbial communities to chromium and arsenic alters their diversity and structure."
*PLoS ONE*, 7 (6), e40059. DOI:10.1371/journal.pone.0040059. - C. Shi, J. A. Wallace and J. K. Shen, 2012: "Thermodynamic coupling of protonation and conformational equilibria in proteins: theory and simulation."
*Biophys J*, 102, 1590-1597. - L. Shi, D. B. Brunski, V. I. Sikavitsas, M. B. Johnson and A. Striolo, 2012: "Friction Coefficients for Mechanically-Damaged Bovine Articular Cartilage."
*Biotechnology and Bioengineering*, 109, 1769-1778. - G. F. Shou, L. Ding and D. Dasari, 2012: "Towards a natural and realistic task in EEG: A Fourier independent component analysis study."
*Journal of Neuroscience Method*, 209 (1), 22-34. DOI:10.1016/j.jneumeth.2012.05.022. - A. K. Sieradzan, U. H. E. Hansmann, H. A. Scheraga and A. Liwo, 2012: "Extension of UNRES force field to treat polypeptide chains with D-amino-acid residues."
*J. Chem. Theor. Comp.*, 8, 4746. - A. K. Sieradzan, A. Liwo and U. H. E. Hansmann, 2012: "Folding and self-assembly of a small protein complex."
*J. Chem. Theor. Comp*, 8, 3416. - R. M. Slatt, P. R. Philp, N. O'Brien, Y. Abousleiman, P. Sing, E. V. Eslinger, R. Perez, R. Portas, E. T. Baruch, K. J. Marfurt and S. Madrid-Arroyo, 2012: "Pore-to regional-scale, integrated characterization workflow for unconventional gas shales." In J. Breyer (ed),
*Shale Reservoirs: Giant resources for the 21st century*,*AAPG Memoir*, 97, 127-151, in press. - R. M. Slatt, R. Portas, N. Buckner, Y. Abousleiman, N. O'Brien, M. Tran, R. Sierra, P. Philp, A. Miceli-Romero, R. Davis and T. Wawrzyniec, 2012: "Outcrop/behind outcrop (quarry) multiscale characterization of the Woodford gas shale, Oklahoma." In J. Breyer (ed),
*Shale Reservoirs: Giant resources for the 21st century*,*AAPG Memoir*, 97, 382-402, in press. - R. M. Slatt and N. Rodriguez, 2012: "Comparative sequence stratigraphy and organic geochemistry of gas shales: Commonality or coincidence?"
*Journal of Natural Gas Science and Engineering*, 8, 68 - 84. DOI:10.1016/j.jngse.2012.01.008. - N. Snook, M. Xue and Y. Jung, 2012: "Ensemble probabilistic forecasts of a tornadic mesoscale convective system from ensemble Kalman filter analyses using WSR-88D and CASA radar data."
*Mon. Wea. Rev.*, 140, 2126-2146. - C. Srinivasan and D. V. Papavassiliou, 2012: "Comparison of backwards and forwards scalar relative dispersion in turbulent shear flow."
*Int. J. Heat and Mass Transf.*, 55, 5650-5664. - A. H. Stobbe, U. Melcher, M. W. Palmer, M. J. Roossinck, G. Shen, 2012: “Co-divergence and host-switching in the evolution of tobamoviruses”.
*Journal of General Virology, 93*, 408-18. DOI: 10.1099/vir.0.034280-0. - J. Tallant, D. Booth, S. Rittenhouse, H. Sadghepour and J. P. Shaffer, 2012: "Observation of Blue Shifted Ultralong Range Cs2 Rydberg Molecules."
*Physical Review Letters*, 109, 173202. arXiv:1205:4974. - R. M. Todd, E. Jiang, R. L. Galbraith, J. R. Cruz and R. W. Wood, 2012: "Two-Dimensional Voronoi-Based Model and Detection for Shingled Magnetic Recording." In
*Digests IEEE International Magnetics Conference*, Vancouver, Canada, p. HT-07. - R. M. Todd, E. Jiang, R. L. Galbraith, J. R. Cruz and R. W. Wood, 2012: "Two-dimensional Voronoi-based model and detection for shingled magnetic recording."
*IEEE Trans. Magn.*, 48 (11), 4594-4597. - E. M. Tromble, R. L. Kolar, K. M. Dresback and R. A. Luettich, 2012: "River Flux Boundary Considerations in a Coupled Hydrologic-Hydrodynamic Modeling System."
*Estuarine and Coastal Modeling,Procedings 12 International Conference*, M. L. Spaulding, eds., American Society of Civil Engineers, 510-527. DOI: 10.1061/9780784412411.00030. - R. S. Voronov, S. Van Gordon, R. L. Shambaugh, D. V. Papavassiliou and V. I. Sikavitsas, 2012: "3D Tissue Engineered Construct Analysis via Conventional High Resolution MicroCT without X-Ray Contrast."
*Tissue Engineering Part C Methods*, accepted. - J. A. Wallace and J. K. Shen, 2012: "Unraveling a trap-and-trigger mechanism in the pH-sensitive self-assembly of spider silk proteins."
*J Phys Chem Lett*, 3, 658-662. - Q.-W. Wang and M. Xue, 2012: "Convective initiation on 19 June 2002 during IHOP: High-resolution simulations and analysis of the mesoscale structures and convection initiations."
*J. Geophy. Res.*, 117, D12107. - Y. Wang, J. K. Shen, S. J. Schroeder, 2012: "Nucleotide Dynamics at the A-site Cleft in the Peptidyltransferase Center of H. marismortui 50 S Ribosomal Subunits."
*J. Phys. Chem. Lett.*, 3, 1007-1010. - B. Wawrik, W. B. Boling, J. D. V.n Nostrand, J. Xie, J. Zhou and D. A. Bronk, 2012: "Assimilatory Nitrate Utilization by Bacteria on the West Florida Shelf as Determined by Stable Isotope Probing and Functional Microarray Analysis."
*FEMS Microbiology Ecology*, 79, 2, 400-411. DOI: 10.1111/j.1574-6941.2011.01226.x - B. Wawrik, M. Mendivelso, V. A. Parisi, J. M. Suflita, I. A. Davidova, C. R. Marks, J. D. V.n Nostrand, Y. Liang, J. Zhou, B. J. Huizinga, D. Strąpoć and A. V. Callaghan, 2012: "Field and Laboratory Studies on the Bio-Conversion of Coal to Methane."
*FEMS Microbiology Ecology*, special issue on subsurface microbiology, 81, 1, 26-42. DOI: 10.1111/j.1574-6941.2011.01272.x - F. R. Willett, A. H. Fagg, A. J. Suminski and N. G. Hatsopoulos, 2012: "Improving neural control of a simulated arm by decoding intended future movement."
*Proc. of Computational and Systems Neuroscience (Cosyne)*, III-39. - H. Yazdani, K. Hatami, T. Hawa and B. P. Grady, 2012: "Molecular Dynamics Simulation of Sensor Enabled Geosynthetics."
*Proc. TechConnect World 2012*, paper #918. - M. Yeary, J. Crain, A. Zahrai, C. Curtis, J. Meier, R. Kelley, I. Ivic, R. Palmer, D. Doviak, G. Zhang and T.-Y. Yu, 2012: "Multi-Channel Receiver Design Methods, Instrumentation and First Results at the National Weather Radar Testbed."
*IEEE Transactions on Instrumentation and Measurements*, 61 (7), 2022-2033. - J. Yi, B. H. Morrow, A. L. O. Campbell, J. K. Shen and G. B. Richter-Addo, 2012: "Nitric oxide coupling mediated by iron porphyrins: the N.N bond formation step is facilitated by electrons and a proton."
*Chem Commun*, 48, 9041-9043. - K. Zhao, M. Xue and W.-C. Lee, 2012: "Assimilation of GBVTD-retrieved winds from single-Doppler radar for short-term forecasting of Super Typhoon Saomai (0608) at landfall."
*Quart. J. Roy. Meteor. Soc.*, 138, 1055-1071. - F. Zou, R. M. Slatt, R. Bastidas and B. Ramirez, 2012: "Integrated outcrop 'reservoir' characterization, modeling and simulation of the Jackfork group at the Baumgartner quarry area, western Arkansas: Implications to Gulf of Mexico deepwater exploration and production."
*AAPG Bulletin*, 96, 1429-1448.

## 2011

**2011 Publications Facilitated by OSCER Rounds/Help Sessions**

- S. B. VanGordon, R. S. Voronov, T. B. Blue, R. L. Shambaugh, D. V. Papavassiliou and V. I. Sikavitsas, 2011: "Effects of Scaffold Architecture on Preosteoblastic Cultures under Continuous Fluid Shear."
*Industrial & Engineering Chemistry Research*, 50 (2), 620-629, DOI: 10.1021/ie902041v. Available online

**Other 2011 Publications Facilitated by OU Research IT**

- I. Y. Akkutlu and E. Fathi, 2011: "Multi-scale Gas Transport in Shales with Local Kerogen Heterogeneities."
*Proc. SPE Annual Technical Conference and Exhibition 2011*. - D. Argyris, P. D. Ashby and A. Striolo, 2011: "Assessing the Structure of Interfacial Water via AFM: Insights from Simulations."
*ACS Nano*, 5, 2215-2223. - D. Argyris, T. A. Ho, D. R. Cole and A. Striolo, 2011: "Molecular Dynamics Studies of Interfacial Water at the Alumina Surface,
*Journal of Physical Chemistry C*, 115, 2038-2046. - D. Argyris, T. Ho, D. Papavassiliou and A. Striolo, 2011: "Equilibrium and Transport Properties of Aqueous Electrolytes within Narrow Slit-Shaped Pores: From Molecular Dynamics Results to Nanofluidic Devices." Chemical Engineering Transactions, 24, 1363-1368.
- P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg and R. N. Parthasarathy, 2011: "Aeroelastic Analysis of Membrane Micro Air Vehicles. Part 1: Flutter and Limit Cycle Analysis for Fixed-Wing Configurations."
*ASME Journal of Vibration and Acoustics*, 133 (2), 021008-1-021008-8. - P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg and R. N. Parthasarathy, 2011: "Aeroelastic Analysis of Membrane Micro Air Vehicles. Part 2: Computational Study of a Plunging Membrane Airfoil."
*ASME Journal of Vibration and Acoustics*, 133 (2), 021009-1-021009-6. - D. Bodine, D. Michaud, R. D. Palmer, P. L. Heinselman, J. Brotzge, N. Gasperoni, B. L. Cheong, M. Xue and J. Gao: "Understanding radar refractivity: sources of uncertainty."
*J. Atmos. Ocean Tech.*, 50, 2543-2560. - K. Bui, H. M. Duong, A. Striolo and D. V. Papavassiliou, 2011: "Effective heat transfer properties of graphene sheet nanocomposites and comparison to carbon nanotube nanocomposites."
*Journal of Phys. Chemistry C*, 115 (10), 3872-3880. DOI: 10.1021/jp109978x. - K. N. D. Bui, B. P. Grady and D. V. Papavassiliou, 2011: "Heat transfer in high volume fraction CNT nanocomposites: Effects of inter-nanotube thermal resistance."
*Chem. Phys. Let.*, 508 (4-6), 248-251. DOI: 10.1016/j.cplett.2011.04.005. - J. S. Cabral, J. M. Kondo, L. F. Goncalves, V. A. Nascimento, L. G. Marcassa, D. Booth, J. Tallant, A. Schwettmann, K. R. Overstreet, J. Sedlacek and J. P. Shaffer, 2011: "Effect of Electric Fields on Ultracold Rydberg Atom Interactions."
*Journal of Physics B*(Special Issue on Rydberg Atom Physics), 44, 184007. - W. Chang and J. R. Cruz, 2011: "Intertrack Interference Mitigation on Staggered Bit-Patterned Media,"
*Digests IEEE International Magnetics Conference*, Taipei Taiwan, AU-09. - W. Chang and J. R. Cruz, 2011: "Intertrack Interference Mitigation on Staggered Bit-Patterned Media."
*IEEE Transactions on Magnetics*, 47 (10), 2551-2554. - A. J. Clark, J. S. Kain, D. J. Stensrud, M. Xue, F. Kong, M. C. Coniglio, K. W. Thomas, Y. Wang, K. Brewster, J. Gao, X. Wang, S. J. Weiss, D. Bright and J. Du, 2011: "Probabilistic precipitation forecast skill as a function of ensemble size and spatial scale in a convection-allowing ensemble."
*Mon. Wea. Rev.*, 139, 1410-1418. - J. Dong, M. Xue and K. K. Droegemeier, 2011: "The analysis and impact of simulated high-resolution surface observations in addition to radar data for convective storms with an ensemble Kalman filter."
*Meteor. Atmos. Phy.*, 112, 41-61. - K. M. Dresback, J. G. Fleming, B. O. Blanton, C. Kaiser, J. J. Gourley, E. M. Tromble, R. A. Luettich, R. L. Kolar, Y. Hong, S. Van Cooten, H. J. Vergara, Z. L. Flamig, H. M. Lander, K. E. Kelleher and K. L. Nemunaitis-Monroe, 2011: "Skill Assessment of a Real-Time Forecast System Utilizing a Coupled Hydrologic and Coastal Hydrodynamic Model During Hurricane Irene."
*Continental Shelf Research*, 71, 78-94. - Brent E. Eskridge, 2011: "Extrapolation of Regularity Using Indirect Encodings." In
*IEEE Congress on Evolutionary Computation*, 1280-87. - J. Elston, B. Argrow, E. Frew, A. Houston and J. Straka, 2011: "Evaluation of Unmanned Aircraft Systems for Severe Storm Sampling using Hardware-in-the-Loop Simulations."
*Journal of Aerospace Computing, Information, and Communication*, 8 (9), 269-294. - H. Fan, D. E. Resasco and A. Striolo, 2011: "Amphiphilic silica nanoparticles at the decane-water interface: Insights from atomistic simulations."
*Langmuir*, 27, 5264-5274. - A. O. Fierro, E. R. Mansell, D. R. MacGorman and C. Ziegler, 2012: "Application of a lightning data assimilation technique in the WRF-ARW model at cloud-resolving scales for the Tornado Outbreak of 24 May 2011.
*Monthly Weather Review*, 140, 2609-2627. - A. O. Fierro, E. J. Zipser, M. A. LeMone, Straka J. M. and J. Simpson, 2012: "Tropical oceanic hot towers: Need they be undilute to transport energy from the boundary layer to the upper troposphere effectively? An answer based on trajectory analysis of a simulation of a TOGA COARE convective system."
*Journal of the Atmospheric Sciences*, 69, 195-213. - J. Gao and D. J. Stensrud, 2011: "Assimilation of Reflectivity Data in a Convective-Scale, Cycled 3DVAR Framework with Hydrometeor Classification,
*J. Atmos. Sci.*, conditionally accepted. - M. Gately, M. Yeary and C. Tang, 2011: "Reduced-hardware digital filter design via joint quantization and multiple constant multiplication optimization."
*IEEE International Conference on Acoustics, Speech, and Signal Processing*, 4368-4371, Prague. - M. Gee and P. J. Attar, 2011: "High Fidelity Aeroelastic Simulation of a Membrane Airfoil Undergoing Figure-of-Eight Kinematics."
*Proc. 52nd AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference*, Denver CO, AIAA Paper 2011-1711. - R. Gordnier, C. Chimakurthi and P. J. Attar, 2011: "High-Fidelity Aeroelastic Computations of a Flapping Wing with Spanwise Flexibility."
*Proc. 49th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition*, Orlando FL, AIAA Paper 2011-570. - N. G. Hatsopoulos, A. J. Suminski and A. H. Fagg, 2011: "Using Naturalistic Kinesthetic Feedback for Brain Machine Control."
*Proc. International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC-11).* - T. A. Ho, D. Argyris, D. V. Papavassiliou, A. Striolo, L. L. Lee and D. R. Cole, 2011: "Interfacial Water on Crystalline Silica: A Comparative Molecular Dynamics Simulation Study."
*Molecular Simulation*, 37, 172-195. - T. A. Ho, D. V. Papavassiliou, L. L. Lee and A. Striolo, 2011: "Water Can Slip on a Hydrophilic Surface."
*Proceedings of the National Academy of Sciences of the United States of America*, 108, 16170-16175. Impact Factor (2010): 9.771. - B. Holland, 2011: "Effects of sequential or simultaneous assimilation of observations and localization methods on the performance of the ensemble Kalman filter." M.S. thesis (advisor X. Wang), School of Meteorology, University of Oklahoma.
- N. S. Jacobson and D. L. Myers, 2011: "High Temperature Vaporization of B2O3(l) Under Reducing Conditions."
*J. Phys. Chem. B*, 115 (45), 13253-60. Epub 2011 Oct 26. DOI: 10.1021/jp206480d - A. Johnson, 2011: "Clustering analysis, verification and calibration of a convection-allowing ensemble forecast system." M.S. thesis (advisor X. Wang), School of Meteorology, University of Oklahoma.
- A. Johnson, X. Wang, F. Kong and M. Xue, 2011a: "Hierarchical cluster analysis of a convection-allowing ensemble during the Hazardous Weather Testbed 2009 Spring Experiment. Part I: Development of object-oriented cluster analysis method for precipitation fields."
*Mon. Wea. Rev.*, 139, 3673-3693. - A. Johnson, X. Wang, M. Xue and F. Kong, 2011b: "Hierarchical cluster analysis of a convection-allowing ensemble during the Hazardous Weather Testbed 2009 Spring Experiment. Part II: Season-long ensemble clustering and implication for optimal ensemble design."
*Mon. Wea. Rev.*, 139, 3694-3710. - R. K. Kalluri, D. Konatham and A. Striolo, 2011: "Aqueous NaCl Solutions within Charged Carbon-Slit Pores: Partition Coefficients and Density Distributions from Molecular Dynamics Simulations."
*Journal of Physical Chemistry C*, 115, 13786-13795. Impact Factor (2010): 4.520. - S. M. Kang, E. Fathi, R. J. Ambrose, I. Y. Akkutlu and R. F. Sigal, 2011: "Carbon Dioxide Storage Capacity of Organic-Rich Shales."
*SPE Journal*, 16 (4), 842-855. - Anjani K. C. Varthy Karna, 2011: "Computational investigation of the effects of turbulence structures on transport mechanisms," M.S. thesis (advisor D. Papavassiliou), University of Oklahoma.
- D. Konatham, K. Bui, D. V. Papavassiliou and A. Striolo, 2011: "Thermally Conductive Graphene-Based Nanocomposites,
*Molecular Physics*, 109, 97-111. Invited article. DOI:10.1080/00268976.2010.533707. - M.L. Laury, S.E. Boesch, I. Haken, P. Sinha, R.A. Wheeler, A.K. Wilson, 2011: “Harmonic vibrational frequencies: Scale factors for pure, hybrid, hybrid meta, and double-hybrid functionals in conjunction with correlation consistent basis sets”.
*Journal of Computational Chemistry, 32*, 2339-2347. DOI: 10.1002/jcc.21811. - L. L. Lee, 2011: "Constructing a new closure theory based on the third-order Ornstein-Zernike equation and a study of the adsorption of simple fluids."
*Journal of Chemical Physics*, 135, 204706. - X. Li, M. J. McInerney, D. A. Stahl and L. R. Krumholz, 2011: "Metabolism of H2 by
*Desulfovibrio alaskensis*G20 During Syntrophic Growth on Lactate."*Microbiology*, 151, 2912-2921. - C. Liu, H. Soltani, J. D. Pinilla, K. K. Muraleetharan, A. B. Cerato and G. A. Miller, 2011: "Centrifuge Investigation of Seismic Behavior of Pile Foundations in Soft Clays."
*Proc. GeoFrontiers 2011: GSP 211, Advances in Geotechnical Engineering.*Dallas TX, 585-594. - A. McGovern, D. J. Gagne II, N. Troutman, R. A. Brown, J. Basara and J. Williams, 2011: "Using Spatiotemporal Relational Random Forests to Improve our Understanding of Severe Weather Processes."
*Statistical Analysis and Data Mining*, special issue on the best of the 2010 NASA Conference on Intelligent Data Understanding, 4 (4), 407-429. - A. McGovern, D. H. Rosendahl, R. A. Brown and K. K. Droegemeier, 2011: "Identifying Predictive Multi-Dimensional Time Series Motifs: An application to severe weather prediction."
*Data Mining and Knowledge Discovery*, 22 (1), 232-258. - V. M. Melnikov, D. S. Zrnic, R. J. Doviak, P. B. Chilson, D. B. Mechem and Y. L. Kogan, 2011: "Prospects of the WSR-88D radar for cloud studies."
*Journal of Applied Meteorology and Climatology*, 50, 859-872. DOI: 10.1175/2010JAMC2303.1. - A. E. Mercer, M. B. Richman and L. M. Leslie, 2011: "Identification of severe weather outbreaks using kernel principal component analysis."
*Procedia Comp. Sci.*, 6, 231-236. - H. Moradi, M. Falahpour, H. H. Refai and P. G. LoPresti, 2011: "A Diversity Combining Approach for MIMO FSO Nodes with Misaligned Receivers."
*Proc. IEEE Globecom'11*, Houston TX, accepted. - H. Moradi, H. H. Refai and P. G. LoPresti, 2011: "Switch-and-Stay and Switch-and-Examine Dual Diversity for High Speed FSO Links."
*IET Optoelectronics*, accepted. - H. Moradi, H. H. Refai and P. G. LoPresti, 2011: "A Switched Diversity Approach for Multi-receiving Optical Wireless Systems."
*Journal of Applied Optics*, 50 (29), 5606-5614. - H. Moradi, H. H. Refai, P. G. LoPresti and M. Atiquzzaman, 2011: "Mobile FSO Nodes in SIMO Setup under Transmitter Misalignment."
*Wiley Wireless Communications and Mobile Computing*, accepted. - H. Moradi, H. H. Refai, P. G. LoPresti and M. Atiquzzaman, 2011: "Diversity Combining for Mobile FSO Nodes in SIMO Setup."
*Proc. 7th International Wireless Communications and Mobile Computing*(IEEE IWCMC'11), Istanbul, Turkey, 2243-2248. - B. H. Morrow, Y. Wang, J. A. Wallace, P. H. Koenig and J. K. Shen, 2011: "Simulating pH titration of a single surfactant in ionic and nonionic micelles."
*J Phys Chem B*, 115, 14980-14990. - B. H. Morrow, D. E. Resasco, A. Striolo and M. Buongiorno Nardelli, 2011: "CO Adsorption on Noble Metal Clusters: Local-Environment Effects."
*Journal of Physical Chemistry C*, 115, 5637-5647. - M. Nagao, S. Chawang and T. Hawa, 2011: "Interlayer distance dependence of thickness fluctuations in a swollen lamellar phase."
*Soft Matter*, 7, 6598. - T. D. Nguyen and M. Bagajewicz, 2011: "Parallel Computing Approaches to Sensor Network Design Using the Value Paradigm."
*Computers and Chemical Engineering*, 35, 1119–1134. DOI: 10.1016/j.compchemeng.2010.07.014. - O. Ozcelik, P. J. Attar and M. C. Altan, 2011: "Experimental and Computational Characterization of the Nonlinear Vibration Response of Plunging Beams."
*52nd AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference*, Denver CO, AIAA Paper 2011-1775. - C. K. Potvin, A. Shapiro, M. I. Biggerstaff and J. M. Wurman, 2011: "The VDAC technique: A variational method for detecting and characterizing convective vortices in multiple Doppler radar data."
*Mon. Wea. Rev.*, 139, 2593-2613. - T. Prasomsri, A. T. To, S. Crossley, W. E. Alvarez and D. E. Resasco, 2011: "Catalytic conversion of anisole over HY and HZSM-5 zeolites in the presence of different hydrocarbon mixtures."
*Applied Catalysis B: Environmental*, 106, 204-211. - M. P. Ruiz, J. Faria, M. Shen, S. Drexler, T. Prasomsri and D. E. Resasco, 2011: "Nanostructured Carbon-Metal Oxide Hybrids as Amphiphilic Emulsion Catalysts."
*ChemSusChem*, 4, 964-974. - M. S. Sadik and L. Gruenwald, 2011: "An Adaptive Outlier Detection Technique for Data Streams."
*Proc. 23rd Scientific and Statistical Database Management Conference (SSDBM)*. - S. Sadik and L. Gruenwald, 2011: "Online Outlier Detection for Data Streams."
*Proc. 15th International Database Engineering and Applications (IDEAS)*. - B. Sadler, P. Hoeflich, E. Baron, K. Krisciunas, G. Folatelli, M. Hamuy, M. Khokhlov. M. Phillips, N. Suntzeff, L. Wang, 2011:”Constraining the Properties of SNe~Ia Progenitors from Light Curves”.
*Proceedings of the International Astronomical Union, 7*(S281). DOI: 10.1017/S1743921312015256. - A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao, 2011: "The analysis and prediction of the 8-9 May 2007 Oklahoma tornadic mesoscale convective system by assimilating WSR-88D and CASA radar data using 3DVAR.
*Mon. Wea. Rev.*, 139, 224-246. - A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao, 2011: "Impact of CASA radar and Oklahoma mesonet data assimilation on the analysis and prediction of tornadic mesovortices in a MCS."
*Mon. Wea. Rev.*, 139, 3422-3445. - S. J. Schroeder, J. W. Stone, S. Bleckley, T. Gibbons and D. M. Mathews, 2011: "Ensemble of Secondary Structures for Encapsidated Satellite TObacco MOsaic VIrus RNA Consistent with Chemical Probing and Crystallography Constraints."
*Biophys. J.*, 101, 167-175. - C. S. Sheik, W. H. Beasley, M. S. Elshahed, X. Zhou, Y. Luo and L. R. Krumholz, 2011: "Effect of warming and drought on grassland microbial communities."
*ISME J.*, 1-9. - S. Sitthisa, W. An and D. E. Resasco, 2011: "Selective Conversion of Furfural to Methylfuran over Silica-supported Ni-Fe Bimetallic Catalysts."
*Journal of Catalysis*, 284, 90-101. - S. Sitthisa, T. Pham, T. Prasomsri, T. Sooknoi, R. G. Mallinson and D. E. Resasco, 2011: "Conversion of furfural and 2-methylpentanal on Pd/SiO2 and Pd-Cu/SiO2 catalysts."
*Journal of Catalysis*, 280, 17-27. - R. M. Slatt and N. R. O'Brien, 2011: "Pore types in the Barnett and Woodford gas shales: contribution to understanding gas storage and migration pathways in fine grained rocks."
*AAPG Bull.*, 2017-2030. - N. Snook, M. Xue and Y. Jung, 2011: "Analysis of a tornadic mesoscale convective vortex based on Ensemble Kalman Filter assimliation of CASA X-band and WSR-88D radar data."
*Mon. Wea. Rev.*, 139, 3446-3468. - A. M. Sprenger, M. R. Dougherty, S. M. Atkins, A. M. Franco-Watkins, R. P. Thomas, N. Lange and B. Abbs, 2011: "Implications of cognitive load for hypothesis generation and probability judgment."
*Frontiers in Psychology-Cognitive Science*, 2, 1-15. - C. Srinivasan and D. V. Papavassiliou, 2011: "Prediction of turbulent Prandtl number in wall flows with Lagrangian simulations."
*Ind. Eng. Chem. Res.*, 50 (15), 8881-8891. DOI: 10.1021/ie1019497. - C. Srinivasan and D. V. Papavassiliou, 2011: "Direction of scalar transport in turbulent channel flow."
*Physics of Fluids*, 23 (11), 115105, 21 pages. - A. Striolo, 2011: "From Interfacial Water to Macroscopic Observables: A Review."
*Adsorption Science and Technology*, 29, 211-258. Invited article. Also featured on the cover page. Impact Factor (2010): 0.559. - A. J. Suminski, F. R. Willett, A. H. Fagg, M. Bodenhamer and N. G. Hatsopoulos, 2011: "Continuous Decoding of Intended Movements with a Hybrid Kinetic and Kinematic Brain Machine Interface."
*Proc. International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC-11).* - M. Suttipong, N. R. Tummala, B. Kitiyanan and A. Striolo, 2011: "Role of Surfactant Molecular Structure on Self Assembly: Aqueous SDBS On Carbon Nanotubes."
*Journal of Physical Chemistry C*, 115, 17286-17296. Also featured in the cover art of*J. Phys. Chem. C*, 35, Sep 8 2011. Impact Factor (2010): 4.520. - R. L. Tanamachi, 2011: "Multiple cyclic tornado production modes in the 5 May 2007 Greensburg, Kansas supercell storm." Ph.D. dissertation (advisor H. Bluestein), School of Meteorology, University of Oklahoma.
- T. B. Trafalis, O. O. Oladunni and M. B. Richman, 2011: "Linear classification Tikhonov regularization knowledge-based support vector machine for tornado forecasting."
*Computational Management Science*, 8, 281-297. - E. M. Tromble, 2011: "Advances Using the ADCIRC Hydrodynamic Model: Parameter Estimation and Aspects of Coupled Hydrologic-Hydrodynamic Flood Inundation Modeling." Ph.D. dissertation (advisor R. Kolar), School of Civil Engineering & Environmental Science, University of Oklahoma. ProQuest ID: 886734255.
- N. R. Tummala, L. Shi and A. Striolo, 2011: "Molecular Dynamics Simulations of Surfactants at the Silica-Water Interface: Anionic vs. Nonionic Headgroups."
*Journal of Colloid and Interface Science*, 362, 135-143. - S. Van Cooten, K. E. Kelleher, K. Howard J. Zhang, J. J. Gourley, J. S. Kain, K. Nemunaitis-Monroe, Z. Flamig, H. Moser, A. Arthur, C. Langston, R. L. Kolar, Y. Hong, K. M. Dresback, E. M. Tromble, H. Vergara, R. A. Luettich, B. Blanton, H. Lander, K. Galluppi, J. Losego, C. A. Blain, J. Thigpen, K. Mosher, D. Figurskey, M. Moneypenny, J. Blaes, J. Orrock, R. Bandy, C. Goodall, R. Bandy, D. Eslinger, J. Payne, G. Olmi, J. Feldt, J. Schmidt, T. Hamill, R. Bacon, R. Stickney and L. Spence, 2011: "The CI-FLOW Project: Tracking Precipitation from the Sky to Summit to Sea."
*Bulletin of the American Meteorological Society, 92*, 1427-1442. DOI: 10.1175/2011BAMS3150.1. - M. C. van Zanten, B. B. Stevens, L. Nuijens, A. P. Siebesma, A. Ackerman, F. Burnet, A. Cheng, F. Couvreaux, H. Jiang, M. Khairoutdinov, Y. Kogan, D. C. Lewellen, D. Mechem, K. Nakamura, A. Noda, B. J. Shipway, J. Slawinska, S. Wang and A. Wyszogrodzki, 2011: "Controls on precipitation and cloudiness in simulations of trade-wind cumulus as observed during RICO."
*J. Adv. Model. Earth Syst.*, 3, M06001. DOI:10.3894/JAMES.2011.3.5. - J. A. Wallace and J. K. Shen, 2011: "Continuous constant pH molecular dynamics in explicit solvent with pH-based replica exchange."
*J. Chem. Theory Comput.*, 7, 2617-2629. - J. A. Wallace, Y. Wang, C. Shi, J. K. Pastoor, B.-L. Nguyen, K. Xia and J. K. Shen, 2011: "Towards accurate prediction of pKa values for internal protein residues: the importance of conformational relaxation and desolvation energy."
*Proteins*, 79, 3364.3373. - X. Wang, 2011: "Application of the WRF hybrid ETKF-3DVAR data assimilation system for hurricane track forecasts."
*Wea. Forecasting*, 26, 868-884. - Y. Wang, J. A. Wallace, P. H. Koenig and J. K. Shen, 2011: "Molecular dynamics simulations of ionic and nonionic micelles with a generalized-Born implicit-solvent model."
*J. Comput. Chem.*, 32, 2348-2358.

## 2010

**2010 Publications Facilitated by OSCER Rounds/Help Sessions**

- M. Diaz Campos, 2010: "Uncertainties in shale gas in-place calculations: Molecular simulation approach." M.S. thesis (advisor Y. Akkutlu), Mewbourne School of Petroleum & Geological Engineering, University of Oklahoma.
- A. Fitz Gibbon, P. Gray, D. A. Joiner, T. Murphy, H. Neeman, R. M. Panoff, C. Peck and S. Thompson, 2010: "Teaching High Performance Computing to Undergraduate Faculty and Undergraduate Students."
*Proc. TeraGrid 2010*, article 7.**Best Paper: Education, Outreach & Training Track.**DOI: 10.1145/1838574.1838581. - C. C. Kiser, T. A. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2010: "Reynolds Number Dependence for Laminar Flow Loss Coefficients in Tee and Wye Junctions."
*Proceedings of ASME 2010 3rd Joint US-European Fluids Engineering Summer Meeting and 8th International Conference on Nanochannels, Microchannels, and Minichannels (FEDSM2010-ICNMM2010),*FEDSM-ICMM2010-31026. - P. Moisant, H. Neeman and A. Zlotnick, 2010: "Exploring the Paths of (Virus) Assembly."
*Biophysical Journal*, 99 (5), 1350-1357. - H. Neeman, H. Severini, D. Wu, K. Kantardjieff, 2010: "Teaching High Performance Computing via Videoconferencing."
*ACM Inroads*, 1 (1), 67-71. - R. Voronov, 2010: "Fluid Shear Stress and Nutrient Transport Effects Via Lattice Boltzmann and Lagrangian Scalar Tracking Simulations of Cell Culture Media Perfusion through Artificial Bone Tissue Engineering Constructs Imaged With MicroCT." Ph.D. dissertation (advisor D. Papavassiliou), School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- R. S. Voronov, S. VanGordon, V. I. Sikavitsas and D. V. Papavassiliou, 2010: "Computational modeling of flow-induced shear stresses within 3D salt-leached porous scaffolds imaged via micro-CT."
*Journal of Biomechanics*, 43 (7), 1279-1286. DOI: 10.1016/j.jbiomech.2010.01.007. - R. S. Voronov, S. B. VanGordon, V. I. Sikavitsas and D. V. Papavassiliou, 2010: "Efficient Lagrangian scalar tracking method for reactive local mass transport simulation through porous media."
*International Journal for Numerical Methods in Fluids*, DOI: 10.1002/fld.2369. - R. S. Voronov, S. VanGordon, V. I. Sikavitsas and D. V. Papavassiliou, 2010: "Distribution of Flow-Induced Stresses in Highly Porous Media."
*Applied Physics Letters*, 97, 024101.

**Other 2010 Publications Facilitated by OU Research IT**

- E. K. Abalo, K. A. Milton and L. Kaplan, 2010: "Casimir Energies of Cylinders: Universal Function."
*Phys. Rev. D*, 82, 125007, 29 pages, arXiv:1008.4778. DOI: 10.1103/PhysRevD.82.125007. - P. Adhikari, Y. Hong, K. R. Douglas, D. B. Kirschbaum, J. J. Gourley, R. Adler and G. R. Brakenridge, 2010: "A Digitized Global Flood Inventory (1998-2008): compilation and preliminary results."
*J. Nat. Hazard*. DOI: 10.1007/s11069-010-9537-2. - I. Adrianto, M. B. Richman and T. B. Trafalis, 2010: "Machine learning techniques for imbalanced data: an application for tornado data."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 20, 509-516. [Best Paper Award: Novel Smart Engineering System Design] - C. C. Agbalaka and D. S. Oliver, "Joint Updating of Petrophysical Properties and Discrete Facies Variables from Assimilating Production Data Using EnKF."
*SPE Reservoir Evaluation & Engineering*, accepted. - D. Argyris, D. R. Cole and A. Striolo, 2010: "Ion-Specific Effects Under Confinement: The Role of Interfacial Water."
*ACS Nano*, 4, 2035-2042. - T. Ashley, D. Wu, R. Watkins, H. Neeman and B. Howard, 2010: "Modeling Tumor Invasion: Assessing Erlang for the Modeling of Molecular/Cellular Dynamics."
*Proceedings of Trends in Functional Programming 2010*, paper 27 - P. J. Attar, D. Tang and E. H. Dowell, 2010: "Nonlinear Aeroelastic Study for Folding Wing Structures."
*AIAA Journal*, 48, (10), October 2010, 2187-2195. DOI: 10.2514/1.44868. - P. J. Attar, J. W. Johnston, W. A. Romberg, R. N. Parthasarathy and B. J. Morris, 2010: "A Characterization of Limit Cycle Oscillations in Membrane Wing Micro Air Vehicles at Low Angle of Attack."
*Proc. 3rd Joint US-European Fluids Engineering Summer Meeting and 8th International Conference on Nanochannels, Microchannels, and Minichannels*, Montreal Canada, FEDSM-ICNMM2010-30674. - P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg and R. N. Parthasarathy, 2010: "Aeroelastic Analysis of Membrane Micro Air Vehicles. Part 1: Flutter and Limit Cycle Analysis for Fixed-Wing Configurations."
*Journal of Vibration and Acoustics*, in press. DOI: 10.1115/1.4002129. - P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg and R. N. Parthasarathy, 2010: "Aeroelastic Analysis of Membrane Micro Air Vehicles. Part 2: Computational Study of a Plunging Membrane Airfoil."
*Journal of Vibration and Acoustics*, in press. DOI: 10.1115/1.4002134. - K. A. Brewster, K. W. Thomas, J. Gao, J. Brotzge, M. Xue, Y. Wang, 2010: "A Nowcasting System Using Full Physics Numerical Weather Prediction Initialized with CASA and NEXRAD Radar Data."
*Proc. 25th Conference on Severe Local Storms*, Denver CO. - K. A. Brewster, J. G. LaDue, M. C. Coniglio, M. P. Foster, T. Marshall, G. S. Garfield, 2010: "Forecasting Supercell Storms: Application of Operational Tools and Cutting-Edge Numerical Model Guidance in VORTEX2."
*Proc. 25th Conference on Severe Local Storms*, Denver CO. - J. S. Cabral, J. M. Kondo, L. F. Goncalves, L. G. Marcassa, D. Booth, J. Tallant and J. P. Shaffer, 2010: "Manipulation of Quantum State Transfer in Cold Rydberg Atom Collisions."
*New Journal of Physics*, 12, 093023. - W. Chang, 2010: "Advanced Signal Processing for Magnetic Recording on Perpendicularly Magnetized Media." Ph.D. dissertation (advisor J. R. Cruz), School of Electrical & Computing Engineering, University of Oklahoma.
- W. Chang and J. R. Cruz, 2010: "RS Plus LDPC Codes for Perpendicular Magnetic Recording."
*Digests IEEE International Magnetics Conference*, Washington DC, GH-13. - W. Chang and J. R. Cruz, 2010: "RS Plus LDPC Codes for Perpendicular Magnetic Recording."
*IEEE Transactions on Magnetics*, 46 (6), 1416-1419. - W. Chang and J. R. Cruz, 2010: "An Improved Belief-Propagation Decoder for LDPC-Coded Partial-Response Channels."
*IEEE Transactions on Magnetics*, 46 (7), 2639-2648. - W. Chang and J. R. Cruz, 2010: "Inter-Track Interference Mitigation for Bit-Patterned Magnetic Recording."
*IEEE Transactions on Magnetics*, 46 (11), 3899-3908. - S. Chawang, 2010: "The effect of interlayer distance on thickness fluctuations in a swollen lamellar phase: A molecular dynamics study." M.S. thesis (advisor T. Hawa), School of Aerospace & Mechanical Engineering, University of Oklahoma, December 2010.
- Y. Chen and D. S. Oliver, 2010: "Localization of Ensemble-Based Control Setting Updates for Production Optimization in Large Fields."
*SPE Journal*, in revision. - Y. Chen and D. S. Oliver, 2010: "Cross-covariances and localization for EnKF in multiphase flow data assimilation."
*Computational Geosciences*, in press. DOI: 10.1007/s10596-009-9174-6. - J. Crofford, B. E. Eskridge and D. F. Hougen, 2010: "Applying the triple parameter hypothesis to maintenance scheduling."
*Proc. Genetic and Evolutionary Computation Conference*, 799-806. - M. R. P. Dougherty, R. P. Thomas and N. Lange, 2010: "Toward an integrative theory of hypothesis generation, probability judgment, and information search."
*The Psychology of Learning and Motivation*, 52. - D. T. Dawson II, M. Xue, J. A. Milbrandt and M. K. Yau, 2010: "Comparison of evaporation and cold pool development between single-moment and multi-moment bulk microphysics schemes in idealized simulations of tornadic thunderstorms."
*Mon. Wea. Rev.*, 138, 1152-1171. - J. Dong, 2010: "Applications of Ensemble Kalman Filter Data Assimilation: From Convective Thunderstorms to Hurricanes." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- K. M. Dresback, R. L. Kolar, C. A. Blain, C. M. Szpilka, A. M. Szpilka, R. A. Luettich and T.. Shay, 2010: "Development and Application of the Coupled HYCOM and ADCIRC System."
*Estuarine and Coastal Modeling*,*Proceedings of the Eleventh International Conference*, M. L. Spaulding (eds.), American Society of Civil Engineers, 259-277. DOI: 10.1061/41121(388)16.

- B. E. Eskridge and D. F. Hougen, 2010: "Extending Adaptive Fuzzy Behavior Hierarchies to Multiple Levels of Composite Behaviors."
*Robotics and Autonomous Systems*, 58 (9), 1076-1084. DOI: 10.1016/j.robot.2010.05.003. - B. E. Eskridge and D. F. Hougen, 2010: "State and Action Abstraction in the Development of Agent Controllers."
*Autonomous Agents*, Vedran Kordic, ed., INTECH, Chapter 1, 1-25. - G. Ge, J. Gao, K. Brewster and M. Xue, 2010: "Impacts of beam broadening and earth curvature on 3D variational radar data assimilation radial velocity with two Doppler radars."
*J. Atmos. Ocean Tech.*, 27, 617-636. - R. Gordnier, P. J. Attar, S. Chimakurthi and C. Cesnik, 2010: "Implicit LES Simulations of a Flexible Flapping Wing."
*Proc. 51st AIAA Structures, Structural Dynamics and Materials Conference*. Orlando FL, AIAA-2010-2960. - J. W. Johnston, W. Romberg, P. J. Attar and R. Parthasarathy, 2010: "Experimental Characterization of Limit Cycle Oscillations in Membrane Wing Micro Air Vehicles."
*Journal of Aircraft*, 47, (4), July-August 2010, 1300-1308. DOI: 10.2514/1.47258. - Y. Jung, M. Xue and G. Zhang, 2010: "Simultaneous estimation of microphysical parameters and atmospheric state using simulated polarimetric radar data and ensemble Kalman filter in the presence of observation operator error."
*Mon. Wea. Rev.*, 138, 539-562. - Y. Jung, M. Xue and G. Zhang, 2010: "Simulations of polarimetric radar signatures of a supercell storm using a two-moment bulk microphysics scheme."
*J. Appl. Meteor. Climatol.*, 49, 146-163. - J. S. Kain, M. Xue, M. C. Coniglio, S. J. Weiss, F. Kong, T. L. Jensen, B. G. Brown, J. Gao, K. Brewster, K. W. Thomas, Y. Wang, C. S. Schwartz and J. J. Levit, 2010: "Assessing advances in the assimilation of radar data within a collaborative forecasting-research environment."
*Wea. Forecasting*, 25, 1510-1521. - S. I. Khan, Y. Hong, B. Vieux and W. Liu, 2010: "Development and evaluation of an actual evapotranspiration estimation algorithm using satellite remote sensing and meteorological observational network in Oklahoma."
*International Journal of Remote Sensing*, 31 (14), 3799 - 3819. DOI: 10.1080/01431161.2010.483487. - S. I. Khan, Y. Hong, J. Wang, K. K. Yilmaz, J. J. Gourley, R. F. Adler, G. R. Brakenridge, F. Policelli, S. Habib and D. Irwin, 2010: "Flood Inundation Mapping from Remote Sensing and Hydrologic Modeling."
*IEEE Trans. Geosci. Remote Sens.*, in press. - K. Kirupakaran, A. B. Cerato, C. Liu, G. A. Miller, K. K. Muraleetharan, J. D. Pinilla, S. Price and Z. M. Thompson, 2010: "Simulation of a Centrifuge Model Test of Pile Foundations in CDSM Improved Soft Clays.
*Proc. GeoFlorida 2010: GSP 199, Advances in Analysis, Modeling and Design.*West Palm Beach FL, 1583-1591. - A. K. Kis and J. M. Straka, 2010: "Nocturnal Tornado Climatology."
*Wea. Forecasting*, 25, 545.561. DOI: 10.1175/2009WAF2222294.1. - G. Koller and F. Samadzadeh, 2010: "Time Bounds on Vertical Partitioning and Scheduling of Task Graphs." Technical Report, OSSM Mentorship Series, Oklahoma School of Science and Mathematics.
- J. M. Kurdzo and R. D. Palmer, 2010: "A multi-band, multi-mission phased array radar network in the CONUS."
*Proc. AMS Annual Meeting*, Atlanta GA. - J. M. Kurdzo and R. D. Palmer, 2010: "Optimization of a multi-band, multi-mission phased array radar network in the USA using a genetic algorithm."
*Proc. Sixth European Conference on Radar in Meteorology and Hydrology*, Sibiu Romania. - J. Kurdzo and R. Palmer, 2010: "Optimization of a multi-band, multi-mission phased array radar network using a genetic algorithm."
*Proc. AMS Annual Meeting*, Seattle WA. - A. Labryer and P. J. Attar, 2010: "A Harmonic Balance Approach for Large-Scale Problems in Nonlinear Structural Dynamics."
*Computers and Structures*, 88, (17-18), 1002-1014. DOI: 10.1016/j.compstruc.2010.06.003. - S. Lakshmivarahan and J. M. Lewis, 2010: "Forward Sensitivity Based Approach to Dynamic Data Assimilation."
*Advances in Meteorology*, 2010, article ID 375615. DOI: 1155/2010/375615. - L. L. Lee, M. C. Hara, S. J. Simon, F. S. Ramos, A. J. Winkle and J.-M. Bomont, 2010: "Crystallization limits of the two-term Yukawa potentials based on the entropy criterion."
*Journal of Chemical Physics*, 132, 074505. - Z. Liao, Y. Hong, J. Wang, H. Fukoka, K. Sassa, D. Karnawati and F. Fathani, 2010: "Prototyping an Experimental Early Warning System for Rainfall-Induced Landslides in Indonesia Using Satellite Remote Sensing and Geospatial Datasets."
*CL Landslides Journal*. DOI: 10.1007/s10346-010-0219-7. - A. McGovern, T. Supinie, D. J. Gagne II, N. Troutman, M. Collier, R. A. Brown, J. Basara and J. Williams, 2010: "Understanding Severe Weather Processes through Spatiotemporal Relational Random Forests."
*Proc. NASA Conference on Intelligent Data Understanding: CIDU 2010.*. - D. B. Mechem, Y. L. Kogan and D. Shultz, 2010: "Large Eddy Observation of Post-frontal Continental Stratus."
*J. Atmos. Sci.*, 67, 3368-3383. - D. B. Mechem, Y. L. Kogan and D. Shultz, 2010: "Large Eddy Simulations of Post-frontal Continental Stratus."
*J. Atmos. Sci.*, 67, 3835-3853. - B. H. Morrow and A. Striolo, 2010: "Supported Bimetallic Pt-Au Nanoparticles: Structural Features Predicted by Molecular Dynamics Simulations."
*Physical Review B*, 81, 155437. - D. S. Oliver, Y. Zhang, H. Phale and Y. Chen, 2010: "Distributed Parameter and State Estimation in Petroleum Reservoirs."
*Computers & Fluids*, 10 Oct 2010. - H. Phale and D. S. Oliver, 2010: "Data assimilation using the constrained ensemble Kalman filter."
*SPE Journal*, 16 (2), 331-342. SPE-125101-PA. DOI: 10.2118/125101-PA. - T. Prasomsri, R. E. Galiasso Tailleur, W. E. Alvarez, T. Sooknoi and D. E. Resasco, 2010: "Conversion of 1- and 2-Tetralone Over HY Zeolite."
*Catalysis Letters*, 135, 226-232. - T. Prasomsri, R. E. Galiasso Tailleur, W. E. Alvarez, T. Sooknoi and D. E. Resasco, 2010: "Conversion of 1-tetralone over HY zeolite: An indicator of the extent of hydrogen transfer."
*Applied Catalysis A*, 389, 140-146. - T. Prasomsri, D. Shi and D. E. Resasco, 2010: "Anchoring Pd nanoclusters onto pristine and functionalized single-wall carbon nanotubes. A combined DFT and experimental study."
*Chemical Physics Letters*, 497, 103-107. Featured on the Journal cover. - J. Rufinus, 2010: "Ab-initio calculation of magnetic properties of Mn-doped ZnGeN
_{2}."*Journal of Magnetism and Magnetic Materials*, 322, 1182-1184. - J. Rufinus, 2011: "Ab-Initio calculation of magnetic properties of Gd-doped ZnGeN
_{2}."*Journal of Applied Physics*, 109, 07C315. - M. S. Sadik, 2010: "Outlier Detection for Data Streams." M.S. thesis (advisor L. Gruenwald), School of Computer Science, University of Oklahoma.
- M. S. Sadik and L. Gruenwald, 2010: "DBOD-DS: Distance Based Outlier Detection for Data Streams."
*Proc. 21st International Conference on Database and Expert Systems Application (DEXA)*. - A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao, 2010: "Impact of radar data assimilation on the analysis and prediction of the 8-9 May 2007 Oklahoma tornadic mesoscale convective system, Part I: Mesoscale features on a 2 km grid."
*Mon. Wea. Rev.*, in review. - A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao, 2010: "Impact of radar data assimilation on the analysis and prediction of the 8-9 May 2007 Oklahoma tornadic mesoscale convective system, Part II: Sub-storm-scale mesovortices on a 400 m Grid."
*Mon. Wea. Rev.*, 139, 224-246. - C. M. Shafer, C. A. Doswell III, L. M. Leslie and M. B. Richman, 2010: "On the use of areal coverage of parameters favorable for severe weather to discriminate major outbreaks."
*Electronic J. Severe Storms Meteor.*, 5, 1–43. - C. M. Shafer, A. E. Mercer, L. M. Leslie, M. B. Richman, C. A. Doswell III, 2010: "Evaluation of WRF model simulations of tornadic and nontornadic outbreaks occurring in the spring and fall."
*Mon. Wea. Rev.*, 138, 4098-4119. - J. K. Shen, 2010: "Uncovering specific electrostatic interactions in the denatured states of proteins."
*Biophys. J.*, 99, 1-9. - L. Shi, N. R. Tummala and A. Striolo, 2010: "A Molecular Dynamics Study for C12E6 and SDS Surfactants at the Water-Vacuum Interface."
*Langmuir*, 26, 5462-5474. - O. Shieh, 2010: "The Structure and Evolution of a Supercell in a High-resolution Hurricane Numerical Simulation." M.S. thesis (advisor J. Straka), School of Meteorology, University of Oklahoma.
- C. Srinivasan and D. V. Papavassiliou, 2010: "Backwards and forwards dispersion of a scalar in turbulent wall flows."
*Int. J. Heat Mass Transf.*, 53, 1023-1035. - D. Stensrud and J. Gao, 2010: "Importance of horizontally inhomogeneous environmental initial conditions to ensemble storm-scale radar data assimilation and very short range forecasts."
*Mon. Wea. Rev.*, 138 (4), 1250-1272. - J. M. Straka and K. M. Kanak, 2010: "Multimoment microphysical parameterizations in cloud models." McGraw Hill (Invited paper). Accepted and to be published in Dec. 2010.
- H. Su and D. S. Oliver, 2010: "Smart well production optimization using an ensemble-based method."
*SPE Reservoir Evaluation & Engineering*, SPE-126072, accepted and available Online First. - A. J. Suminski, D. C. Tkach, A. H. Fagg and N. G. Hatsopoulos, 2010: "Incorporating Feedback from Multiple Sensory Modalities Enhances Brain-Machine Interface Control."
*Journal of Neuroscience*, 30 (50), 16777-16787. - Y. Tachwali, F. Basma, J. Barnes and H. Refai, 2010: "Wireless Microphone Signal Detection using a Compressive Sensing Technique for IEEE 802.22."
*Proc. 20th Virginia Tech Wireless Symposium*, Blacksburg VA. - E. M. Tromble, R. L. Kolar, K. M. Dresback, Y. Hong, B. E. Vieux, R. A. Luettich J. J. Gourley, K. Kelleher and S. Van Cooten, 2010: "Aspects of Coupled Hydrologic/Hydrodynamic Modeling for Coastal Flood Inundation."
*Estuarine and Coastal Modeling*,*Proceedings of the Eleventh International Conference*, M. L. Spaulding (eds.), American Society of Civil Engineers, 724-743. DOI: 10.1061/41121(388)42.

- N. R. Tummala, B. P. Grady and A. Striolo, 2010: "Lateral Confinement Effects on the Structural Properties of Surfactant Aggregates: SDS on Graphene."
*Physical Chemistry Chemical Physics*, 12, 13137-13143. - N. R. Tummala, B. H. Morrow, D. E. Resasco and A. Striolo, 2010: "Stabilization of Aqueous Carbon Nanotube Dispersions using Surfactants: Insights from Molecular Dynamics Simulations."
*ACS Nano*, 4, 7193-7204. - J. A. Wallace and J. K. Shen, 2010: "Probing the strand orientation and registry alignment in the propagation of amyloid fibrils of Ab(16-22)."
*Biochemistry*, 49, 5290-5298. - H. Wang, 2010: "Parallel Subspace Subcodes of Reed-Solomon Codes for Magnetic Recording Channels." Ph.D. dissertation (advisor J. R. Cruz), School of Electrical & Computing Engineering, University of Oklahoma.
- R. A. Weller, J. L. Anderson, A. Arribas, R. E. Dickinson, L. Goddard, E. Kalnay, B. Kirtman, R. D. Koster, M. B. Richman, R. Saravanan, D. Waliser and B. Wang, 2010:
*Assessment of Intraseasonal to Interannual Climate Prediction and Predictability.*National Academies Press, Washington DC, 182pp. - Y. Wen, Y. Hong, G. Zhang, T. Schuur, J. J. Gourley, Z. Flamig, K. R. Morris and Q. Cao, 2010: "Cross Validation of Space-borne Radar and Ground Polarimetric Radar Aided by Polarimetric Echo Classification of Hydrometeor Types."
*AMS Journal of Applied Meteorology and Climatology*, 50 (7), 1389-1402. - M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang, K. Brewster and K. K. Droegemeier, 2010: "Prediction of convective storms at convection-resolving over continental United States with radar data assimilation: An example case of 26 May 2009."
*Geophy. Res. Letters*, submitted. - M. Xue, Y. Jung and G. Zhang, 2010: "State estimation of convective storms with a two-moment microphysics scheme and ensemble Kalman filter: Experiments with simulated radar data."
*Q. J. Roy. Meteor. Soc.*, 136, 685-700. DOI: 10.1002/qj.593. - B. Yong, L. Ren, Y. Hong, J. Wang, J. J. Gourley, S. Jiang, X. Chen and W. Wang, 2010: "Hydrologic evaluation of Multisatellite Precipitation Analysis standard precipitation products in basins beyond its inclined latitude band: A case study in Laohahe basin, China."
*Water Resour. Res.*, 46, W07542. DOI: 10.1029/2009WR008965. - Y. Zhang and D. S. Oliver, 2010: "Evaluation and Error Analysis: Kalman Gain Regularization versus Covariance Regularization for EnKF."
*Computational Geosciences*, submitted. - Y. Zhang and D. S. Oliver, 2010: "History matching using a multiscale stochastic model with the ensemble Kalman filter: a field case study."
*SPE Journal*, accepted. - Y. Zhang and D. S. Oliver, 2010: "Improving the Kalman gain by bootstrap sampling."
*Mathematical Geosciences*, 42 (3), 327-345. - Y. Zhang, N. Liu and D. S. Oliver, 2010: "Ensemble filter methods with perturbed observations applied to nonlinear problems."
*Computational Geosciences*, 14 (2), 249-261. - C. L. Ziegler, E. R. Mansell and E. C. Bruning, 2010: "Impact of varying CCN concentration on the precipitation process in a simulated convective storm." Extended Abstracts,
*13th Conference on Cloud Physics*, Portland OR, American Meteorological Society, JP3.17. - C. L. Ziegler, E. R. Mansell, J. M. Straka, D. R. MacGorman and D. W. Burgess, 2010: "The impact of spatial variations of ambient low-level stability on the full life cycle of a simulated supercell storm."
*Mon. Wea. Rev.*, 138, 1738-1765.

## 2009

**2009 Publications Facilitated by OSCER Rounds/Help Sessions**

- T. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2009: "Loss Coefficients in Microelbows."
*Proceedings of FEDSM2009, ASME Fluids Engineering Division Summer Meeting*, paper FEDSM2009-78517. - T. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2009: "Laminar Entrance Length in Microtubes."
*Proceedings of FEDSM2009, ASME Fluids Engineering Division Summer Meeting*, paper FEDSM2009-78532. - J. S. Kain, S. J. Weiss, D. R. Bright, M. E. Baldwin, J. J. Levit, G. W. Carbin, C. S. Schwartz, M. Weisman, K. K. Droegemeier, D. Weber and K. W. Thomas, 2009: "Some practical considerations for the first generation of operational convection-allowing NWP: How much resolution is enough?"
*Wea. Forecasting*, 23, 931-952. - D. Konatham and A. Striolo, 2009: "Molecular Design of Stable Graphene Nano-Sheets Dispersions."
*Nano Letters*, 8, 4630. - Z. T. Segele, P. J. Lamb and L. M. Leslie, 2009: "Seasonal-to-Interannual Variability of Ethopia/Horn of Africa Monsoon. Part I: Associations of Wavelet-Filtered Large-Scale Atmospheric Circulation and Global Sea Surface Temperature."
*J. Climate*, 22, 3396-3421. - Z. T. Segele, P. J. Lamb and L. M. Leslie, 2009: "Large-scale atmospheric circulation and global sea surface temperature associations with Horn of Africa June-September rainfall."
*Int. J. Climatol.*, 29, 1075-1100. - Z. T. Segele, L. M. Leslie and P. J. Lamb, 2009: "Evaluation and adaptation of a regional climate model for the Horn of Africa: Rainfall climatology and interannual variability."
*Int. J. Climatol*, 29, 47-65. - E. Weng, C. Gao and Y. Luo, 2009: "Uncertainty Analysis on Forest Carbon Sink Forecast with Varying Measurement Errors: A Data Assimilation Analysis."
*IOP Conf. Series: Earth and Environmental Science*, 6, 302038. DOI: 10.1088/1755-1307/6/0/302038.

**Other 2009 Publications Facilitated by OU Research IT**

- D. Argyris, D. R. Cole and A. Striolo, 2009: "Dynamic Behavior of Interfacial Water at the Silica Surface."
*Journal of Physical Chemistry C*, 113, 19591-19600. - D. Argyris, D. R. Cole and A. Striolo, 2009: "Hydration Structure on Silica Crystalline Substrates."
*Langmuir*, 25, 8025-8035. - P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg and R. N. Parthasarathy, 2009: "Aeroelastic Analysis of Membrane Micro Air Vehicles."
*Proceedings of the ASME 2009 Fluids Engineering Division Summer Meeting*, Vale CO USA. - P. J. Attar, D. Tang and E. H. Dowell, 2009: "Nonlinear Aeroelastic Study for Folding Wing Structures."
*Proc. NATO-RTA Symposium on Morphing Wings*, Evora Portugal, MP-AVT-168-10. - P. J. Attar and R. E. Gordnier, 2009: "High Fidelity Computational Aeroelastic Analysis of a Plunging Membrane Airfoil."
*Proc. 50th AIAA Structures, Structural Dynamics and Materials Conference*, Palm Springs CA. - P. J. Attar and P. Vedula, 2009: "Direct Quadrature Method of Moments Solution of the Fokker-Planck Equation for Stochastic Processes in Aeroelasticity."
*AIAA Journal*, 47 (5), 1219-1227, DOI: 10.2514/1.40292. - K. K. Beasley, L. M. Gieg, J. M. Suflita and M. A. Nanny, 2009: "Polarizability and Spin Density Correlate with the Relative Anaerobic Biodegradability of Alkylaromatic Hydrocarbons."
*Environmental Science and Technology*, 43, 4995-5000. DOI: 10.1021/es9003558. - K. Beatty, E. N. Rasmussen, J. M. Straka and L. Lemon, 2009: "The supercell spectrum. Part II: A semi-objective method for radar classification of supercell type."
*Electronic J. Severe Storms Meteor.*, 4, 1-30. - S. E. Boesch and R. A. Wheeler, 2009: "Isotropic
^{13}C Hyperfine Coupling Constants Distinguish Neutral from Anionic Ubiquinone-Derived Radicals."*ChemPhysChem*, 10 (18), 3187-3189. DOI: 10.1002/cphc.200900503. - W. Chang and J. R. Cruz, 2009: "Optimal Channel Detection for Nonbinary Coded Partial Response Channels."
*IEEE Transactions on Communications*, 57 (7), 1892-1895. - Y. Chen, D. S. Oliver and D. Zhang, 2009: "Data assimilation for nonlinear problems by ensemble Kalman filter with reparameterization."
*J. Petrol. Science and Engineering*, 66 (1--2), 1-14. - Y. Chen, D. S. Oliver and D. Zhang, 2009: "Efficient ensemble-based closed-loop production optimization."
*SPE Journal*, 14 (4), 634-645. - D. Dawson, 2009: "The impact of single- and multi-moment microphysics on numerical simulations of supercells and tornadoes of the Oklahoma tornadic storms of 3 May 1999." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- P. A. Diaz-Gomez and D. F. Hougen, 2009: "Three Interconnected Parameters for Genetic Algorithms."
*Genetic and Evolutionary Computation Conference*, 763-770. - P. A. Diaz-Gomez and D. F. Hougen, 2009: "Initial Population Diversity and Performance Independence."
*International Conference on Artificial Intelligence and Pattern Recognition*, 6 pages (unnumbered). - B. Eskridge, 2009: "Effects of State and Action Abstraction on Development of Controllers for Concurrent, Interfering, Non-Episodic Tasks." Ph.D. dissertation (advisor D. Hougen), School of Computer Science, University of Oklahoma.
- B. E. Eskridge and D. F. Hougen, 2009: "Using State and Action Abstraction in Controllers for Concurrent, Interfering, Non-episodic Tasks."
*Autonomous Agents*, V. Kordic, ed., I-Tech Education and Publishing, ISBN 978-953-307-089-6. - B. E. Eskridge and D. F. Hougen, 2009: "Using Action Abstraction to Evolve Effective Controllers."
*Proc. Genetic and Evolutionary Computation Conference*, 1773-1774. - A. O. Fierro, R. Rogers, F. Marks and D. Nolan, 2009: "Impact of horizontal grid spacing on simulated tropical cyclone microphysical and kinematic fields."
*Monthly Weather Review*, 137, 3717-3743. - A. O. Fierro, J. Simpson, M. A. LeMone, J. M. Straka and B. F. Smull, 2009: "On How Hot Towers Fuel the Hadley Cell: An Observational and modeling study of line-organized convection in the Equatorial Trough from TOGA COARE."
*Journal of Atmospheric Sciences*, 66 (9) 2730-2746. - J. Frame, P. Markowski, Y. Richardson, J. Straka and J. Wurman, 2009: "Polarimetric and Dual-Doppler Radar Observations of the Lipscomb County, Texas, Supercell Thunderstorm on 23 May 2002."
*Mon. Wea. Rev.*, 137, 544-561. - R. E. Gordnier and P. J. Attar, 2009: "Implicit LES Simulations of a Low Reynolds Number Flexible Membrane Wing Airfoil."
*Proc. 47th AIAA Aerospace Sciences Meeting*, Orlando FL, AIAA paper 2009-579. - J. J. Gourley, S. E. Giangrande, Y. Hong, Z. L. Flamig, T. Schuur and J. A. Vrugt, 2009: "Impacts of Polarimetric Radar Observations on Hydrologic Simulation."
*Journal of Hydrometeorology*, 11, 781-796. - J. Gourley, Y. Hong, Z. Flamig, L. Li and J. Wang, 2009: "Inter-comparison of Rainfall Estimates from Radar, Satellite, Gauge, and Combinations for a Season of Record Rainfall."
*J. Appl. Meteor. Climatol.*, 49, 437-452 (special issue on IPWG Remote Sensing Precipitation). - L. A. Heflin, C. B. Street, D. V. Papavassiliou, D. C. Kem, D. H. Wu and E. A. O'Rear, 2009: "Transient Stenotic-like Occlusions as a Possible Mechanism for Renovascular Hypertension Due to Aneurysm."
*Journal of American Society of Hypertension*, 3 (3), 192-200. - G. Jagadeeswaran, Y. Zheng, Y. F. Li, L. I. Shukla, J. Matts, P. Hoyt, S. L. Macmil, G. B. Wiley, B. A. Roe, W. Zhang, and R. Sunkar, 2009: "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families".
*New Phytologist*,*184*(1), 85-98. DOI: 10.1111/j.1469-8137.2009.02915.x. - Y. Jung, M. Xue and G. Zhang, 2009: "Polarimetric radar signatures of a simulated supercell storm using a two-moment microphysics scheme and polarimetric radar emulator."
*J. Appl. Meteor. Climatol.*. DOI: 10.1175/2009JAMC2178.1. - K. M. Kanak and J. M. Straka, 2009: "Numerical simulations of mammatus clouds in shear."
*Atmos. Sci. Letters.*, 10, 226-232. DOI: 10.1002/asl.224. - A. K. Kis, 2009: "Some Challenges in Tornadogenesis Research." M.S. thesis (advisor J. Straka), School of Meteorology, University of Oklahoma.
- Y. L. Kogan, Z. N. Kogan and D. B. Mechem, 2009: "Fidelity of Analytic Drop Size Distributions in Drizzling Stratiform Clouds Based on Large-Eddy Simulations."
*J. Atmos. Sci*, 66, 2335-2348. - D. Konatham and A. Striolo, 2009: "Thermal Boundary Resistance at the Graphene-Oil Interface."
*Applied Physics Letters*, 95, 163105. - Phuong M. Le, 2009: "Turbulent heat transport in plane channel and plane Couette flow using a direct numerical simulation in conjunction with Lagrangian scalar tracking." Ph.D. dissertation, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- P. M. Le and D. V. Papavassiliou, 2009: "A physical picture of the mechanism of turbulent heat transfer from the wall."
*Int. J. Heat Mass Transf.*, 52 (21-22), 4873-4882. - L. Li, Y. Hong, J. Wang, R. Adler, F. Policelli, S. Habib, D. Irwin, T. Korme and L. Okello, 2009: "Evaluation of the Real-time TRMM-based Multi-satellite Precipitation Analysis for an Operational Flood Prediction System in Nzoia Basin, Lake Victoria, Africa."
*Journal of Natural Hazards*, 50, (1), 109-123. DOI 10.1007/s11069-008-9324-5. - A. E. Mercer, C. M. Shafer, C. A. Doswell, M. B. Richman and L. M. Leslie, 2009: "Objective classification of tornadic and non-tornadic severe weather outbreaks."
*Mon. Wea. Rev.*, 137, 4355-4368. (Featured in the "Papers of Note" section of the*Bulletin of the American Meteorological Society*.) - B. H. Morrow and A. Striolo, 2009: "Assessing How Metal-Carbon Interactions Affect the Structure of Supported Platinum Nanoparticles."
*Molecular Simulation*, 35, 795-803. - V. A. Nascimento, L. L. Caliri, A. Schwettmann, J. P. Shaffer and L. G. Marcassa, 2009: "Electric Field Effects in the Excitation of Cold Rydberg-Atom Pairs."
*Phys. Rev. Lett.*, 102, 213201. - D. S. Oliver and Y. Chen, 2009: "Improved initial sampling for the ensemble Kalman filter."
*Computational Geosciences*, 13 (1), 13-26. - K. R. Overstreet, A. Schwettmann, J. Tallant, D. Booth and J. P. Shaffer, 2009: "Observation of electric-field-induced Cs Rydberg atom macrodimers."
*Nature Physics*, 5, 581 - 585. - C. K. Potvin, A. Shapiro, T.-Y. Yu, J. Gao and M. Xue, 2009: "Using a low-order model to characterize and detect tornadoes in multiple-Doppler radar data."
*Mon. Wea. Rev.*, 137, 1230-1249. - D. Ren, J. Wang, R. Fu, D. Karoly, Y. Hong, L. Leslie, C. Fu and G. Huang, 2009: "Mudslide-caused ecosystem degradation following Wenchuan earthquake 2008."
*Geophysical Research Letters*, 36, L05401. DOI: 10.1029/2008GL036702. - J. Rufinus, 2009: "The magnetic properties of (Cr,V)-doped ZnGeN
_{2}."*J. Phys. Conf. Series*, 200, 6. DOI: 10.1088/1742-6596/200/6/062022. - J. Rufinus, 2009: "Magnetic Properties of M-doped (M = Mn, Cr, or V) ZnSiN2."
*J. Appl. Phys.*, 105, 07C509. - J. Rufinus, 2009: "The magnetic properties of (Mn, Cr, V)-doped MgSiN
_{2}."*Journal of Applied Physics*, 105 (7), 07C509 - 07C509-3. - J. Snow, 2009: "Distributed Monte Carlo Production for D0."
*Proc. International Conference on Computing in High Energy and Nuclear Physics*, Prague, Czech Republic. - N. B. Spencer, L. L. Lee, R. N. Parthasarathy and D. V. Papavassiliou, 2009: "Turbulence structure close to the wall for plane Poiseuille-Couette flow."
*The Canadian Journal of Chemical Engineering*, 87 (1), 38-46. - J. M. Straka, 2009:
*Cloud and Precipitation Microphysics: Principles and Parameterizations.*Cambridge University Press, Cambridge, 406pp. - Y. Tachwali, J. Barnes, F. Basma and H. Refai, 2009: "The Feasibility of Fast Fourier Sampling Technique for Wireless Microphone Detection in IEEE 802.22 Air Interface."
*Proc. IEEE Infocom Work In Progress Workshop 2009*. - N. R. Tummala and A. Striolo, 2009: "Curvature Effects on the Adsorption of Aqueous SDS Surfactants on Carbonaceous Substrates: Structural Features and Counterion Dynamics."
*Physical Review E*, 80, 021408. Also featured in*Virtual Journal of Nanoscale Science & Technology*, 20 (11), Sep 14 2009. - N. R. Tummala and A. Striolo, 2009: "SDS Surfactants on Carbon Nanotubes: Aggregate Morphology."
*ACS Nano 3*, 595-602. - J. Wang, Y. Hong, J. Gourley, P. Adhikari, L. Li and F. Su, 2009: "Quantitative Assessment of Climate Change and Human Impact on Long-term Hydrologic Response using an Impact Factor Formula: A Case Study in a Sub-basin of the Yellow River, China."
*International Journal of Climatology*, Special Issue Hydro-climatology. DOI: 10.1002/joc.2023. - Q. Wang and M. Xue, 2009: "A high-resolution modeling study of convective initiation on 19 June 2002 during IHOP. Part I: Results of control data assimilation experiment."
*23nd Conf. Wea. Anal. Forecasting/19th Conf. Num. Wea. Pred.*, Omaha NE, Amer. Meteor. Soc., Paper 12A.3. - J. A. Wallace and J. K. Shen, 2009: "Predicting protein pKa's with continuous constant pH molecular dynamics."
*Methods Enzymol.*, 466, 455-475. - Q. Xu, L. Wei and S. Healy, 2009: "Measuring information content from observations for data assimilation: Connection between different measures and application to radar scan design."
*Tellus Series A*, 61, 144-153. - M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang, K. Brewster, K. K. Droegemeier, X. Wang, J. Kain, S. Weiss, D. Bright, M. Coniglio and J. Du, 2009: "CAPS realtime multi-model convection-allowing ensemble and 1-km convection-resolving forecasts for the NOAA Hazardous Weather Testbed 2009 Spring Experiment."
*23nd Conf. Wea. Anal. Forecasting/19th Conf. Num. Wea. Pred.*, Omaha NE, Amer. Meteor. Soc., Paper 16A.2. - M. Xue, M. Tong and G. Zhang, 2009: "Simultaneous state estimation and attenuation correction for thunderstorms with radar data using an ensemble Kalman filter: Tests with simulated data."
*Quart. J. Royal Meteor. Soc.*, 135, 1409-1423. - W. T. C. Yuh, N. A. Mayr, D. Jarjoura, D. H. Wu, J. C. Grecula, S. S. Lo, S. M. Edwards, V. A. Magnotta, S. Sammet, H. Zhang, J. F. Montebello, J. M. Fowler, M. V. Knopp and J. Z. Wang, 2009: "Predicting Control of Primary Tumor and Survival by DCE and Volumetric MRI During Early Therapy in Cervical Cancer."
*Invest. Radiol.*, 44 (6), 343-50. - K. Zhao and M. Xue, 2009: "Assimilation of coastal Doppler radar data with the ARPS 3DVAR and cloud analysis for the prediction of Hurricane Ike (2008)."
*Geophy. Res. Letters*, 36, L12803. DOI: 10.1029/2009GL038658. - C. Zhong and J. R. Cruz, 2009: "Symbol-Based Belief Propagation Decoding of Reed-Solomon Codes."
*Proc. IEEE Vehicular Technology Conference*, (Barcelona, Spain), 2009@IEEE. DOI: 10.1109/VETECS.2009.5073872.

## 2008

**2008 Publications Facilitated by OSCER Rounds/Help Sessions**

- D. Argyris, N. R. Tummala, A. Striolo and D. R. Cole, 2008: "Molecular Structure and Dynamics in Thin Water Films at the Silica and Graphite Surfaces."
*Journal of Physical Chemistry C*, 112 (35), 13587-13599 (cover article). - D. Argyris, N. R. Tummala, A. Striolo and D. R. Cole, 2008: "Molecular Structure and Dynamics in Thin Water Films at the Silica and Graphite Surfaces."
*J. Phys. Chem. C*, 112 (35), 13587. - K. A. Brewster, J. Brotzge, K. W. Thomas, Y. Wang, M. Xue, J. Gao, D. Weber and K. Howe, 2008: "High resolution assimilation of CASA and NEXRAD radar data in near-real time: Results from Spring 2007 and plans for Spring of 2008."
*12th Conf. IOAS-AOLS*, New Orleans LA, Amer. Meteor. Soc. - N. Dahl, 2008: "AIRS Version 5 Data Assimilation into ARPS as a Tool for Improving Short-Range Convection-Resolving Numerical Weather Prediction." M.S. thesis, School of Meteorology, University of Oklahoma.
- M. R. Dougherty, A. Franco-Watkins and R. P. Thomas, 2008: "The psychological plausibility of fast and frugal heuristics."
*Psychological Review*, 115 (1), 199-211. - M. R. Dougherty, R. P. Thomas and A. Franco-Watkins, 2008: "Postscript: Vague heuristics revisited."
*Psychological Review*, 115 (1), 211-213. - A. O. Fierro, L. M. Leslie, E. R. Mansell and J. M. Straka, 2008: "Numerical Simulations of the Microphysics and Electrification of the Weakly Electrified 9 February 1993 TOGA COARE Squall Line: Comparisons with Observations."
*Monthly Weather Review*, 136 (1) (January 2008), 364-379. - Z. Guo, 2008: "Ab Initio Folding of Small Peptides with Recently Developed Molecular Dynamics Simulation Protocol." Ph.D. dissertation, Department of Chemistry & Biochemistry, University of Oklahoma.
- T. A. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2008: "Simulations to Determine Laminar Loss Coefficients for Flow in Circular Ducts with Arbitrary Planar Bifurcation Geometries."
*Proceedings of FEDSM2008, 6th ASME Fluids Engineering Summer Conference*, paper FEDSM2008-55181. - B. H. Morrow and A. Striolo, 2008: "Platinum Nanoparticles on Carbonaceous Materials: Effect of Support Geometry on Nanoparticle Mobility, Morphology, and Melting."
*Nanotechnology*, 19, 195711. - H. Neeman, H. Severini, D. Wu, 2008: "Supercomputing in Plain English: Teaching Cyberinfrastructure to Computing Novices."
*inroads: SIGCSE Bulletin*, 40 (2), 27-30. - H. Neeman, H. Severini, D. Wu and K. Kantardjieff, 2008: "Teaching Supercomputing via Videoconferencing."
*Proceedings of TeraGrid 2008*. Best Education Paper award. - K. L. Nemunaitis and J. B. Basara, 2008: "The structure of the convective boundary layer in and around Oklahoma City." Preprints,
*Proc. 22nd Conf. on Hydrology*, New Orleans LA, Amer. Meteor. Soc., CD-ROM J1.5. - A. D. Schenkman, 2008: "High resolution assimilation of CASA and WSR-88D for the prediction of a tornadic convective system." M.S. thesis (advisor A. Shapiro), School of Meteorology, University of Oklahoma.
- A. D. Schenkman, A. M. Shapiro, K. Brewster, M. Xue, J. Gao and N. Snook, 2008: "High resolution assimilation of CASA radar data from a tornadic convective system."
*Symp. Recent Develop. Atmos. Applications Radar Lidar*, New Orleans LA, Amer. Meteor. Soc. - H. Severini, H. Neeman, C. Franklin, J. Alexander and Sumanth J. V., 2008: "Implementing Linux-Facilitated Condor in Windows Computer Labs."
*Proceedings of the 2008 Nuclear Science Symposium*. - A. Striolo, 2008: "On the Solution Self-Assembly of Colloidal Brushes: Insights from Simulations."
*Nanotechnology*, 19, 445606. - M. Subotic, 2008: "Flows between concentric rotating cylinders with a porous lining." Ph.D. dissertation, School of Aerospace & Mechanical Engineering, University of Oklahoma.
- R. P. Thomas, M. R. P. Dougherty, A. Sprenger and I. Harbison, 2008: "Diagnostic hypothesis generation and human judgment."
*Psychological Review*, 115 (1), 155-185. - N. R. Tummala and A. Striolo, 2008: "Hydrogen-Bond Dynamics for Water Confined in Carbon Tetrachloride&Acetone Mixtures."
*J. Phys. Chem. B*, 112 (34), 10675-10683. - N. R. Tummala and A. Striolo, 2008: "Role of Counter-Ion Condensation in the Self-Assembly of SDS Surfactants at the Water-Graphite Interface."
*J. Phys. Chem. B*, 112 (7), 1987-2000. - R. S. Voronov, D. V. Papavassiliou and L. L. Lee, 2008: "Review of Fluid Slip over Superhydrophobic Surfaces and Its Dependence on the Contact Angle."
*Ind. Eng. Chem. Res.*, 47 (8), 2455-2477. 10.1021/ie0712941. - Y. Xu and P. Vedula, 2008: "A Quadrature Based Method of Moments for Nonlinear Filtering." AIAA 2008-6602,
*Proc. AIAA/AAS Astrodynamics Specialist Conference and Exhibit*, Honolulu HI.

**Other 2008 Publications Facilitated by OU Research IT**

- I. Adrianto, T. B. Trafalis and M. B. Richman, 2008: "Active learning with kernel machines for tornado detection."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 18, 131-137. - C. Agbalaka and D. S. Oliver, 2008: "Application of the EnKF and localization to automatic history matching of facies distribution and production data."
*Mathematical Geosciences*, 40 (4), 353-374. - P. J. Attar, 2008: "Some Results for Approximate Strain and Rotation Tensor Formulations in Geometrically Nonlinear Reissner-Mindlin Plate Theory."
*International Journal of Nonlinear Mechanics*, 43 (2), 81-99. - P. J. Attar, R. E. Gordnier and M. R. Visbal, 2008: "Numerical Simulation of the Buffet of a Full Span Delta Wing at High Angle of Attack."
*Journal of Aircraft*, 45 (3), 857-867. - P. Attar and P. Vedula, 2008: "Direct quadrature method of moments solution of the Fokker-Planck equation."
*Journal of Sound and Vibration*, 317 (1-2), 265-272. - P. J. Attar and P. Vedula, 2008: "Direct Quadrature Method of Moments Solution of the Fokker-Planck Equation for Stochastic Processes in Aeroelasticity." AIAA-2008-1986,
*Proc. 49th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference and 10th AIAA Non-Deterministic Approaches Conference*, Schaumburg IL. - W. Chang and J. R. Cruz, 2008: "Performance and Decoding Complexity of Nonbinary LDPC Codes for Magnetic Recording."
*IEEE Transactions on Magnetics*, 44 (1), 211-216. - W. Chang and J. R. Cruz, 2008: "Nonbinary LDPC Codes for 4K-Byte Sectors."
*Digests IEEE International Magnetics Conference*, Madrid Spain, HM-12. - W. Chang and J. R. Cruz, 2008: "Comments on 'Performance and Decoding Complexity of Nonbinary LDPC Codes for Magnetic Recording.'"
*IEEE Transactions on Magnetics*, 44 (10), 2423-2424. - D. Corrao, 2008: "The role of dataset selection in model verification and cloud parameterization development." M.S. thesis (advisor Y. L. Kogan), School of Meteorology, University of Oklahoma.
- D. T. Dawson II, 2008: "High resolution real-data simulations of the 3 May 1999 tornadic storms with multi-moment microphysics."
*Proc. 24th Conference on Severe Local Storms*, American Meteorological Society, Savannah GA, 14.7. - D. T. Dawson II, M. Xue and J. A. Milbrandt, 2008: "Improvements in the treatment of evaporation and melting in multi-moment versus single-moment bulk microphysics: results from numerical simulations of the 3 May 1999 Oklahoma tornadic storms."
*24th Conference on Severe Local Storms*, American Meteorological Society, Savannah GA, 17B.4. - J. Gao and M. Xue, 2008: "An efficient dual-resolution approach for ensemble data assimilation and tests with assimilated Doppler radar data."
*Mon. Wea. Rev.*, 136, 945-963. - J. Gao, K. Brewster and M. Xue, 2008: "Sensitivity of radio reflectivity to moisture and temperature and its influence on radar ray path."
*Adv. Atmos. Sci.*, 25, 1098-1106. - M. S. Gilmore and J. M. Straka, 2008: "The Berry and Reinhart 1974 autoconversion scheme: A digest."
*J. Appl. Meteor.*, 47, 375-396. - Y. Jung, 2008: "State and parameter estimation using polarimetric radar data and an ensemble Kalman filter." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- Y. Jung, G. Zhang and M. Xue, 2008: "Assimilation of simulated polarimetric radar data for a convective storm using ensemble Kalman filter. Part I: Observation operators for reflectivity and polarimetric variables."
*Mon. Wea. Rev.*, 136, 2228-2245. - Y. Jung, M. Xue, G. Zhang and J. Straka, 2008: "Assimilation of simulated polarimetric radar data for a convective storm using ensemble Kalman filter. Part II: Impact of polarimetric data on storm analysis.
*Mon. Wea. Rev.*, 136, 2246-2260. - K. M. Kanak, J. M. Straka and D. M. Schultz, 2008: "Numerical simulations of mammatus clouds."
*J. Atmos. Sci*, 65, 1606-1621. - T. Lei, M. Xue, T. Yu and M. Teshiba, 2008: "Impact of spatial over-sampling by phased-array radar on convective-storm analysis using ensemble Kalman filter and simulated data."
*Proc. Symp. Recent Develop. Atmos. Applications Radar Lidar*, New Orleans LA, Amer. Meteor. Soc., P2.17. - A. M. Loftus, D. B. Weber and C. A. Doswell III, 2008: "Parameterized Mesoscale Forcing for Initiating Numerically-Simulated Isolated Multicellular Convection."
*Mon. Wea. Rev.*, 136, 2408-2421. - A. McGovern, N. Hiers, M. Collier, D. J. Gagne II and R. A. Brown, 2008: "Spatiotemporal Relational Probability Trees."
*Proc. 2008 IEEE International Conference on Data Mining*, Pisa, Italy, 935-940. - D. B. Mechem and Y. L. Kogan, 2008: "A bulk parameterization of Giant CCN."
*J. Atmos. Sci*, 65, 2458-2466. - D. B. Mechem, Y. L. Kogan, M. Ovtchinnikov, A. B. Davis, K. F. Evans and R. G. Ellingson, 2008: "Multi-dimensional longwave forcing of boundary layer cloud systems."
*J. Atmos. Sci.*, 65, 3963-3977. - A. Mercer, 2008: "Discrimination of Tornadic and Non-Tornadic Severe Weather Outbreaks." Ph.D. dissertation (advisor M. Richman), School of Meterology, University of Oklahoma.
- D. S. Oliver and Y. Chen, 2008: "Improved initial sampling for the ensemble Kalman filter."
*Computational Geosciences*, 12, accepted, doi 10.1007/s10596-008-9101-2. - B. Roostaei, K. J. Mullen, H. A. Fertig and S. H. Simon, 2008: "Theory of Activated Transport in Bilayer Quantum Hall Systems."
*Phys. Rev. Lett.*101, 046804. - J. Rufinus, 2008: "Ab-Initio Study of Transition temperature of Mn-Doped GaN Diluted Magnetic Semiconductor."
*Proc. Appl. Math. and Mech.*, 7 (1), 2110003-2110004. - J. Rufinus and J. DeWinter, 2008: "Magnetic Properties of Mn-Doped Chalcopyrites: (BeSn, BeGe, MgGe)N2."
*J. Appl. Phys.*, 103, 07D109. - A. Shapiro, C. K. Potvin and J. Gao, 2009: "Use of a vertical vorticity equation in variational dual-Doppler wind analysis."
*J. Atmos. Oceanic Technol.*, 26, 2089-2106. - N. Snook and M. Xue, 2008: "Effects of microphysical drop size distribution on tornadogenesis in supercell thunderstorms."
*Geophy. Res. Letters*, 35, L24803. DOI: 10.1029/2008GL035866. - L. Striz, 2008: "A New Method for Solving the Collisional Boltzmann Equation on a Lattice: With Applications to Nonequilibrium Flows." M.S. thesis (directed by P. Vedula), School of Aerospace & Mechanical Engineering, University of Oklahoma.
- R. L. Tanamachi, W. Feltz and M. Xue, 2008: "Observations and numerical simulation of upper boundary layer rapid drying and moistening events during the International H2O Project (IHOP_2002)."
*Mon. Wea. Rev.*, 136 (8), 3106-3120. - M. Van Den Broeke, J. M. Straka and E. N. Rasmussen, 2008: "Polarimetric radar observations at low-levels during tornado life cycles in a small sample of classic Southern Plains supercells."
*J. Appl. Meteor. Climatology*, 47, 1232-1247. - H. Wang, W. Chang and J. R. Cruz, 2008: "Performance of a Chase-Type Decoding Algorithm for Reed-Solomon Codes on Perpendicular Magnetic Recording Channels."
*Journal of Magnetism and Magnetic Materials*, 320, 3124-3127. - D. H. Wu, A. D. Smith, D. M. Thompson, Z. Yang, V. Magnotta, R. Alam, J. Suri, W. T. Yuh and N. A. Mayr, 2008: "Iterative Active Deformational Methodology for Tumor Delineation: Evaluation across Radiation Treatment Stage and Volume."
*J. Magn. Reson. Imaging*, 28, 1188-1194. PMC2720022. - H. Xia, H. Wang and J. R. Cruz, 2008: "A Chase-GMD Algorithm for Soft-Decision Decoding of Reed-Solomon Codes on Perpendicular Recording Channels."
*Proc. IEEE International Conference on Communications*, Beijing China, 1977-1981. - Q. Xu, L. Wei, H. Lu, C. Qiu and Q. Zhao, 2008: "Time-expanded sampling for ensemble-based filters: Assimilation experiments with a shallow-water equation model."
*J. Geophys. Res.*, 113, D02114, DOI: 10.1029/2007JD008624. - Q. Xu, H. Lu, S. Gao, M. Xue and M. Tong, 2008: "Time-Expanded Sampling for Ensemble Kalman Filter: Assimilation Experiments with Simulated Radar Observations."
*Monthly Weather Review*, 136 (7), 2651-2667. DOI: 10.1175/2007MWR2185.1. - L. Yi, Y. L. Kogan and D. B. Mechem, 2008: "An idealized modeling study of the effect of continental air mass aerosol parameters on marine stratocumulus."
*J. Atmos. Res*, 88, 157-167.

## 2007

**2007 Publications Facilitated by OSCER Rounds/Help Sessions**

- R. Abraham and T. S. Ibrahim, 2007: "Proposed Radiofrequency Phased-Array Excitation Scheme Homogenous and Localized 7 Tesla Whole-Body Imaging Based on Full-Wave Numerical Simulations."
*Magnetic Resonance In Medicine*, 57 (2), 236-243.*COMMUNICATION*: Opening Article of the February 2007 Issue. - A. Fierro, 2007: "High-resolution simulations of the electrification and lightning in an idealized hurricane-like vortex over ocean and at landfall." Ph.D. dissertation (advisor L. Leslie), School of Meteorology, University of Oklahoma.
- A. O. Fierro, L. M. Leslie, E. R. Mansell and J. M. Straka, 2007: "High-resolution simulations of the microphysics and electrification in a hurricane-like vortex and in a TOGA COARE oceanic squall line." Preprint,
*13th International Conference on Atmospheric Electricity*, Beijing China, August 13-19. Commission of the International Association of Meteorology and Atmospheric Physics. - A. Fierro, L. Leslie, E. Mansell, J. Straka, D. MacGorman and C. Ziegler, 2007: "A High-resolution Simulation of the Microphysics and Electrification in an Idealized Hurricane-like Vortex."
*Meteorology and Atmospheric Physics*, Springer, 98, 13-33. DOI 10.1007/s00703-006-0237-0. - Y. L. Kogan, Z. N. Kogan and D. B. Mechem, 2007: "Assessing the errors of microphysical retrievals in marine stratocumulus based on Doppler radar parameters."
*J. Hydrometeorol.*, GEWEX special issue, 8, 665-677. - F. Kong, K. K. Droegemeier and N. L. Hickmon, 2007: "Multiresolution Ensemble Forecasts of an Observed Tornadic Thunderstorm System. Part II: Storm-scale Experiments." Mon. Wea. Rev., 135, 759-782.
- E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2007: "Non-Darcy Flow Pore Network Simulation: Development and Validation of a 3D Model."
*Proceedings of FEDSM2007, 5th Joint ASME/JSME Fluids Engineering Conference*, paper FEDSM2007-37278. - E. C. Lemley, D. V. Papavassiliou and H. J. Neeman, 2007: "Simulations to Determine Laminar Loss Coefficients in Arbitrary Planar Dividing Flow Geometries."
*Proceedings of FEDSM2007, 5th Joint ASME/JSME Fluids Engineering Conference*, paper FEDSM2007-37268. - B. H. Morrow and A. Striolo, 2007: "Morphology and Diffusion Mechanism of Platinum Nanoparticles Supported on Carbon Nanotube Bundles."
*Journal of Physical Chemistry C*, 111, 17905. - K. R. Overstreet, A. Schwettmann, J. Tallant and J. P. Shaffer, 2007: "Photoinitiated collisions between cold Cs Rydberg atoms."
*Phys. Rev. A*, 76, 011403(R). - A. Schwettmann, K. R. Overstreet, J. Tallant and J. P. Shaffer, 2007: "Analysis of long-range Cs Rydberg potential wells."
*J. Modern Opt.*, 54, 2551-2562. - A. Striolo, 2007: "Controlled Assembly of Spherical Nanoparticles: Nanowires and Spherulites."
*Small*, 3, 628. - A. Striolo, 2007: "Water Self Diffusion Through Narrow Oxygenated Carbon Nanotubes."
*Nanotechnology*, 18, 475704. - N. R. Tummala and A. Striolo, 2007: "Role of Counter-Ion Condensation on the Self-Assembly of SDS Surfactants at the Water-Graphite Interface."
*Journal of Physical Chemistry B*, 112, 1987. - R. Voronov, D. Papavassiliou and L. Lee, 2007: "Slip Length and Contact Angle Over Hydrophobic Surfaces."
*Chemical Physics Letters*, 441 (4-6), 273-276. DOI: 10.1016/j.cplett.2007.05.013.

**Other 2007 Publications Facilitated by OU Research IT**

- P. J. Attar and R. E. Gordnier, 2007: "Aeroelastic Modeling Using A Geometrically Nonlinear P-version Mixed Reissner-Mindlin Plate Element."
*Proceedings of the 48th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference*, paper AIAA-2007-2318. - K. A. Brewster, K. W. Thomas, J. Brotzge, Y. Wang, D. Weber and M. Xue, 2007: "High Resolution Assimilation of CASA X-Band and NEXRAD Radar Data for Thunderstorm Forecasting."
*Proceedings of the 22nd Conference on Weather Analysis and Forecasting/18th Conference on Numerical Weather Prediction*, American Meteorological Society, CDROM 1B.1. - W. Chang and J. R. Cruz, 2007: "Performance and Decoding Complexity of Nonbinary LDPC Codes for Magnetic Recording."
*Digests IEEE 18th Magnetic Recording Conference*, Minneapolis MN, invited, 72-73. - K. Chen, 2007: "Assembly job shop scheduling problems with component availability constraints." Ph.D. Dissertation, School of Industrial Engineering, University of Oklahoma.
- K. Chen, S. Moses, S. Pulat, 2007: "Material Assignment Models for Build-To-Order Environments."
*European Journal of Industrial Engineering.* - D. T. Dawson II, M. Xue, J. A. Milbrandt, M. K. Yau and G. Zhang, 2007: "Impact of multi-moment microphysics and model resolution on predicted cold pool and reflectivity intensity and structures in the Oklahoma tornadic storms of 3 May 1999."
*22nd Conf. Wea. Anal. Forecasting/18th Conf. Num. Wea. Pred.*, Salt Lake City UT, Amer. Meteor. Soc., CDROM 10B.2. - P. Diaz-Gomez, 2007: "Optimization of Parameters for Binary Genetic Algorithms." Ph.D. dissertation (advisor D. Hougen), School of Computer Science, University of Oklahoma.
- J. Dong, M. Xue and K. Droegemeier, 2007: "The impact of high-resolution surface observations on convective storm analysis with ensemble Kalman filter."
*22nd Conf. Wea. Anal. Forecasting/18th Conf. Num. Wea. Pred.*, Salt Lake City UT, Amer. Meteor. Soc., CDROM P1.42. - Z. Dufran, 2007: "Parameter Range Study of Numerically-Simulated Isolated Multicellular Convection." M.S. thesis, School of Meteorology, University of Oklahoma.
- B. E. Eskridge and D. F. Hougen, 2007: "Using Priorities to Simplify Behavior Coordination." In
*International Joint Conference on Autonomous Agents and Multiagent Systems*, ACM, 1334-1336. - Y. Gu and D. S. Oliver, 2007: "An iterative ensemble Kalman filter for multiphase fluid flow data assimilation."
*SPE Journal*, 12 (4), 438-446. - T. Lei, M. Xue, T. Yu and M. Teshiba, 2007: "Study on the optimal scanning strategies of phase-array radar through ensemble Kalman filter assimilation of simulated data."
*Proc. 33rd Int. Conf. Radar Meteor.*, Cairns, Australia, Amer. Meteor. Soc., CDROM P7.1. - F. Kong, M. Xue, K. K. Droegemeier, D. Bright, M. C. Coniglio, K. W. Thomas, Y. Wang, D. Weber, J. S. Kain, S. J. Weiss and J. Du, 2007: "Preliminary analysis on the real-time storm-scale ensemble forecasts produced as a part of the NOAA hazardous weather testbed 2007 spring experiment."
*22nd Conf. Wea. Anal. Forecasting/18th Conf. Num. Wea. Pred.*, Salt Lake City UT, Amer. Meteor. Soc., CDROM 3B.2. - H. Krutka, 2007: "Analysis of Melt Blowing Dies Ising Computational Fluid Dynamics." Ph.D. Dissertation, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- V. Limpasuvan, D. L. Wu, M. J. Alexander, M. Xue, M. Hu, S. Pawson and J. R. Perkins, 2007: "The ARPS stratospheric gravity wave simulation over Greenland during 24 January 2005."
*J. Geo. Res.*, 112, D10115. DOI: 10.1029/2006JD007823. - H. Liu, 2007: "Retrieval of Moisture from GPS Slant-path Water Vapor Observations Using 3DVAR and Its Impact on the Prediction of Convection Initiation and Precipitation." Ph.D. dissertation (advisor M. Xue), School of Computer Science, University of Oklahoma.
- H. Liu and M. Xue, 2007: "Prediction of convective initiation and storm evolution on 12 June 2002 during IHOP. Part I: Control simulation and sensitivity experiments."
*Mon. Wea. Rev.*, 136, 2261-2283. - H. Liu, M. Xue, R. J. Purser and D. F. Parrish, 2007: "Retrieval of Moisture from GPS Slant-path Water Vapor Observations using 3DVAR with Isotropic and Anisotropic Recursive Filters."
*Mon. Wea. Rev.*, 135, 1506-1521. - R. M. May, M. I. Biggerstaff and M. Xue, 2007: "A Doppler radar emulator and its application to the detectablility of tornadic signatures.
*J. Atmos. Ocean Tech.*, 24, 1973-1996. - J. Rufinus, 2007: "Magnetic properties of (Ti, V, Cr)-doped GaN clusters."
*J. Magnet. and Magnetic Mat. Vol.*, 310 (2), 1666-1668. - J. Rufinus and Y. Kortsarts, 2007: "Parallel Heat Distribution in One Dimension."
*J. of Computing Sciences in Colleges*, 22 (2), 74-81. - J. M. Straka, E. N. Rasmussen, R. P. Davies-Jones and P. M. Markowski, 2007: "An observational and numerical examination of low-level counter-rotating vortices in the rear flank of supercells."
*Electronic J. Severe Storms Meteor.*, 2 (8), 1-22. - A. Striolo and S. A. Egorov, 2007: "Sterical Stabilization of Colloidal Particles: Implicit and Explicit Solvent."
*Journal of Chemical Physics*, 126, 014902. - R. M. Todd and J. R. Cruz, 2007: "Computing Maximum-Likelihood Bounds for Reed-Solomon Codes over Partial Response Channels."
*Proceedings of the IEEE International Conference on Communications 2007*. Selected as**Best Paper**of the Signal Processing and Coding for Data Storage Symposium of ICC 2007. - T. B. Trafalis, I. Adrianto and M. B. Richman, 2007: "Active learning with support vector machines for tornado prediction."
*Lecture Notes in Computer Science*, Shi et al., eds., Springer-Verlag, 4437, 1130-1137. - M. van den Broeke, 2007: "Polarimetric Signatures and Microphysical Processes in Tornadic Southern and High Plains Classic Supercells." M.S. thesis, School of Meteorology (advisor J. Straka), University of Oklahoma.
- H. Wang, W. Chang and J. R. Cruz, 2007: "Performance of a Chase-Type Decoding Algorithm for Reed-Solomon Codes on Perpendicular Magnetic Recording Channels."
*Digests 8th Perpendicular Magnetic Recording Conference*, Tokyo Japan, 250-251. - H. Xia and J. R. Cruz, 2007: "Performance of Reliability-Based Iterative Soft-Decision Reed-Solomon Decoding on Magnetic Recording Channels."
*IEEE Transactions on Magnetics*, 43 (7), 3320-3323. - H. Xia and J. R. Cruz, 2007: "Reliability-Based Forward Recursive Algorithms for Algebraic Soft-Decision Decoding of Reed-Solomon Codes."
*IEEE Transactions on Communications*, 55 (7), 1273-1278. - M. Xue, K. K. Droegemeier and D. Weber, 2007: "Numerical prediction of high-impact local weather: A driver for petascale computing." In
*Petascale Computing: Algorithms and Applications*, D. Bader, ed., Taylor & Francis. - M. Xue, Y. Jung and G. Zhang, 2007: "Error modeling of simulated reflectivity observations for ensemble Kalman filter data assimilation of convective storms."
*Geophys. Res. Letters*, 34, L10802. DOI: 10.1029/2007GL029945. - M. Xue, F. Kong, D. Weber, K. W. Thomas, Y. Wang, K. A. Brewster, K. Droegemeier, J. Kain, S. Weiss, D. Bright, M. Wandishin, M. Coniglio and J. Du, 2007: "CAPS Realtime Storm-scale Ensemble and High-resolution Forecasts as Part of the NOAA Hazardous Weather Testbed 2007 Spring Experiment."
*Proceedings of the 22nd Conference on Weather Analysis and Forecasting/18th Conference on Numerical Weather Prediction*, American Meteorological Society, CDROM 3B.1.

## 2006

**2006 Publications Facilitated by OSCER Rounds/Help Sessions**

- D. Abraham, 2006: "Design of Wireless Brain Machine Interface Antennas." M.S. thesis (advisor T. Ibrahim), School of Electrical & Computer Engineering, University of Oklahoma, May 2006.
- R. Abraham, 2006: "Advancements in Ultra High Field MRI RF Technology: Head and Whole Body Applications." M.S. thesis (advisor T. Ibrahim), School of Electrical & Computer Engineering, University of Oklahoma, May 2006.
- Ben Baranowski, 2006: "The Sensitivity of Numerically Simulated Multicellular Convection to Grid Spacing and Computational Mixing Coefficients." M.S. thesis, University of Oklahoma.
- B. Baranowski, C. Doswell, D. Weber and A. Loftus, 2006: "The Sensitivity of Numerically Simulated Multicellular Convection to Grid Spacing and Computational Mixing Coefficients."
*Proc. 23rd AMS Severe Local Storms Conference*, St. Louis MO, November 2006. - J. Bourassa, B. Roostaei, R. Côte, H. A. Fertig and K. Mullen, 2006: "Pseudospin vortex-antivortex states with interwoven spin textures in double-layer quantum Hall systems."
*Phys. Rev. B*, 74, 195320. - A. O. Fierro, M. S. Gilmore, E. R. Mansell, L. J. Wicker and J. M. Straka, 2006: "Electrification and Lightning in an Idealized Boundary-crossing Supercell Simulation of 2 June 1995."
*Mon Wea. Rev.*, 134, 3149-3172. - A. O. Fierro, L. M. Leslie, E. R. Mansell, Greg J. Holland and J. M. Straka, 2006: "Numerical simulations of the evolution of tropical cyclone electrification, lightning, microphysics, and dynamics at landfall: preliminary results." Preprint,
*86th AMS Annual Meeting*, Atlanta GA, Jan. 28-3, American Meteorological Society. - J. Gao, K. Brewster and M. Xue, 2006: "Differences Between Explicit and Approximated Radar Ray Paths Due to Vertical Gradient of Refractivity."
*Proc. of Conf. Radar Meteor.*, Amer. Meteor. Soc., CDROM JP1J.14. - T. S. Ibrahim, 2006: "7 Tesla Whole-Slice and Localized Excitation Everywhere in the Human Head."
*Proceedings of The 14th International Society of Magnetic Resonance in Medicine Annual Meeting*, Seattle WA, May 2006, 700. - T. S. Ibrahim, 2006: "Ultrahigh Field MRI Whole-slice and Localized RF Field Excitations Using the Same RF Transmit Array."
*IEEE Transactions on Medical Imaging*, 25 (10), 1341-1347. - T. S. Ibrahim, 2006: "A Perspective into Ultra High Field MRI RF Coils."
*Ultra High Field Magnetic Resonance Imaging*(*Biological Magnetic Resonance*26), Robitaille & Berliner, eds., Springer, New York NY. - K. M. Kanak and J. M. Straka, 2006: "An Idealized Numerical Simulation of Mammatus-Like Clouds."
*Atmos. Sci. Letters.*, 7 (1), 2-8. DOI: 10.1002/asl.121. - K. Kuhlman, E. R. Mansell, C. L. Ziegler, D. R. MacGorman and J. M. Straka, 2006: "Numerical Simulations of the 29 June STEPS Supercell: Microphysics, Electrification, and Lightning."
*Mon. Wea. Rev.*, 134, 2734-2757. - A. Loftus, C. Doswell and D. Weber, 2006: "Parameterized Mesoscale Forcing Mechanisms for Initiating Numerically-Simulated Isolated Multicellular Convection."
*Proc. 23rd AMS Severe Local Storms Conference*, St. Louis MO, November 2006. - D. B. Mechem, S. S. Chen and R. A. Houze, Jr., 2006: "Momentum Transport Processes in the Stratiform Regions of Mesoscale Convective Systems over the Western Pacific Warm Pool."
*Quart. J. Roy. Meteor. Soc.*, 132, 709-736. - D. B. Mechem, P. C. Robinson and Y. L. Kogan, 2006: "Processing of Cloud Condensation Nuclei by Collision-coalescence in a Mesoscale Model."
*J. Geophys. Res.*, 111, D18204. DOI: 10.1029/2006JD007183. - A. Mercer and M. B. Richman, 2006: "Statistical Differences of Quasigeostrophic Variables, Stability, and Moisture Profiles in North American Storm Tracks."
*Mon. Wea. Rev.*, 135, 2312-2338. - A. Mercer, C. Shafer, M. Richman, L. Leslie and C. Doswell, 2006: "Analysis of Tornado Outbreaks Using Principal Components."
*Proc. 23rd AMS Severe Local Storms Conference*, St. Louis MO, November 2006. - H. Neeman, L. Lee, J. Mullen and G. Newman, 2006: "Analogies for Teaching Parallel Computing to Inexperienced Programmers."
*inroads: SIGCSE Bulletin*, 38 (4), December 2006. - B. Qin and D. Zhang, 2006: "Numerical Study of High Velocity Non-Darcy Flow Through Porous Media Using LBM Technique."
*Proceedings of the Society of Petroleum Engineers Annual Technical Conference and Exhibition*, San Antonio TX. - E. N. Rasmussen and J. M. Straka, 2006: "Evolution of Angular Momentum in the 2 June 1995, Dimmitt, Texas Tornado."
*J. Atmos. Sci.*, 64, 1365-1378. - E. N. Rasmussen, J. M. Straka, M. S. Gilmore and R. Davies-Jones, 2006: "A Survey of the Occurrence of Rear-flank Descending Reflectivity Cores in a Sample of Supercells."
*Wea. and Forecasting.*, 21, 923-938. - D. M. Schultz, K. M. Kanak, J. M. Straka, R. J. Trapp, B. A. Gordon, D. S., Zrnic, G. H. Bryan, A. J. Durant, T. J. Garrett, P. M. Klein and D. K. Lilly, 2006: "The Mysteries of Mammatus Clouds: Observations and Formation Mechanisms."
*J. Atmos. Sci.*, 63, 2409-2435. - C. Shafer, A. Mercer, C. Doswell, L. Leslie and M. Richman, 2006: "Analysis of Mesoscale Model Forecasts to Distinguish Tornado Outbreaks from Primarily Nontornadic Severe Weather Outbreaks."
*Proc. 23rd AMS Severe Local Storms Conference*, St. Louis MO, November 2006. - A. Schwettmann, J. Crawford, K. Richard Overstreet and J. P. Shaffer, 2006: "Cold Cs Rydberg-gas Interactions." Phys. Rev. A 74, 020701(R).
- J. M. Straka and M. S. Gilmore, 2006: "Does the influence of oblate-like distortions in larger raindrops make a difference in collection and evaporation parameterizations?"
*J. Appl. Meteor.*, 45, 1582-1591. - R. Voronov, 2006: "Slip Boundary Flow on Nanoscale Superhydrophobic Interfaces: A Molecular Dynamics Study - Slip Length as a Function of Wetting Properties." M.S. thesis, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- R. Voronov, D. Papavassiliou and L. Lee, 2006: "Boundary Slip and Wetting Properties of Interfaces: Correlation of the Contact Angle with the Slip Length."
*Journal of Chemical Physics*, 124, 204701. - D. Weber and H. Neeman, 2006: "Experiences in Optimizing a Numercial Weather Predicition Model: An Exercise in Futility?"
*Proc. of the 7th LCI International Conference on Clusters: The HPC Revolution 2006.*

**Other 2006 Publications Facilitated by OU Research IT**

- I. Adrianto, M. B. Richman, J. Park, T. B. Trafalis and S. Lakshmivarahan, 2006: "Machine learning classifiers for tornado detection: sensitivity analysis on tornado data sets."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 16, 679 – 684. - K. Brewster, 2006: "Merging AMSR-E Hydrometeor Data with Coastal Radar Data for Short Term High-resolution Forecasts of Hurricane Ivan."
*Proc. 14th Conference on Satellite Meteorology and Oceanography*, Atlanta GA, American Meteorological Society, Boston. Conference CD, paper P5.7. - J.-Y. Byon, 2006: "Diurnal Variation of Tropical Convection During TOGA COARE IOP." Ph.D. dissertation, Seoul National University.
- P. Cheng, V. A. Magnotta, D. H. Wu, P. Nopoulos, et al., 2006: "Evaluation of the GTRACT diffusion tensor tractography algorithm: a validation and reliability study."
*Neuroimage*, 31 (3), 1075-85. - D. T. Dawson II and M. Xue, 2006: "Numerical Forecasts of the 15-16 June 2002 Southern Plains Severe MCS: Impact of Mesoscale Data and Cloud Analysis."
*Mon. Wea. Rev.*, 134, 1607-1629. - S. Dawson, C. Kao, Y. Wang and P. Williams, 2007: "QCD Corrections to Higgs Pair Production in Bottom Quark Fusion."
*Phys. Rev. D*, 75, 013007. DOI: 10.1103/PhysRevD.75.013007. - Y. Dong, Y. Gu and D. S. Oliver, 2006: "Sequential assimilation of 4D seismic data for reservoir description using the ensemble Kalman filter."
*Journal of Petroleum Science and Engineering*, 53 (1-2), 83-99, 2006. - J. Gao, K. Brewster and M. Xue, 2006: "A Comparison of the Radar Ray Path Equations and Approximations for Use in Radar Data Assimilation."
*Adv. Atmos. Sci.*, 32, 190-198. - J. Gao, M. Xue, S. Lee, A. Shapiro, Q. Xu and K. K. Droegemeier, 2006: "A Three-dimensional Variational Method for Velocity Retrievals from Single-Doppler Radar on Supercell Storms."
*Meteorol. And Atmos. Physics*, 21, 457-469. - G. Ge, J. Gao and K. K. Droegemeier, 2006: "The Impact of Different Data Fields on Storm-scale Data Assimilation."
*11th conf. on mesoscale processes*and*32nd Conference on Radar Meteorology*, CDROM JP1J.3. - Y. Gu and D. S. Oliver, 2006: "The ensemble Kalman filter for continuous updating of reservoir simulation models."
*Journal of Engineering Resources Technology*, 128 (1), 79-87. - M. Hu, M. Xue and K. Brewster, 2006: "3DVAR and Cloud Analysis with WSR-88D Level-II Data for the Prediction of the Fort Worth Tornadic Thunderstorms. Part I: Cloud Analysis and its Impact."
*Mon. Wea. Rev.*, 134, 675-698. - M. Hu, M. Xue, J. Gao and K. Brewster, 2006: "3DVAR and Cloud Analysis with WSR-88D Level-II Data for the Prediction of the Fort Worth Tornadic Thunderstorms. Part II: Impact of Radial Velocity Analysis via 3DVAR."
*Mon. Wea. Rev.*, 134, 699-721. - Y. L. Kogan, 2006: "Large-eddy Simulation of Air Parcels in Stratocumulus Clouds: Time Scales and Spatial Variability." J. Atmos. Sci., 63, 952-967.
- F. Kong, K. K. Droegemeier and N. L. Hickmon, 2006: "Multiresolution Ensemble Forecasts of an Observed Tornadic Thunderstorm System. Part I: Comparison of Coarse- and Fine-grid Experiments."
*Mon. Wea. Rev.*, 134, 807-833. - P. M. Le and D. V. Papavassiliou, 2006: "On Temperature Prediction at Low Re Turbulent Flows Using the Churchill Turbulent Heat Flux Correlation."
*Int. J. Heat Mass Transf.*, 49, 3681-3690. - P. M. Le and D. V. Papavassiliou, 2006: "Turbulent Heat Transfer in Plane Couette Flow."
*J. of Heat Transf.*,*Trans. ASME.*128, 53-62. - H. Liu and M. Xue, 2006: "Retrieval of Moisture from Slant-path Water Vapor Observations of a Hypothetical GPS Network Using a Three-dimensional Cariational Scheme with Anisotropic Background Error."
*Mon. Wea. Rev.*, 134, 933-949. - Y. Lu, D. H. Wu and V. A. Magnotta, 2006: "Partial Volume Correction of Magnetic Resonance Spectroscopic Imaging."
*Proc. Society for Photo-Optical Instrumentation Engineers (SPIE) 2006*, 6512, 322-330. - V. A. Magnotta, L. Friedman and D. H. Wu, 2006: "Measurement of Signal-to-Noise and Contrast-to-Noise in the fBIRN Multi-Center Imaging Study."
*Journal of Digital Imaging*, 19 (2), 140-147. - W. J. Martin and M. Xue, 2006: "Initial Condition Sensitivity Analysis of a Mesoscale Forecast Using Very-large Ensembles."
*Mon. Wea. Rev.*, 134, 192-207. - N. A. Mayr, W. T. Yuh, T. Taoka, J. Z. Wang, D. H. Wu, J. F. Montebello, et al., 2006: "Serial therapy-induced changes in tumor shape in cervical cancer and their impact on assessing tumor volume and treatment response."
*Am. J. Roentgenol*, 187 (1), 65-72. - M. Paprzycki, I. Lirkov and S. Margenov, 2006: "Benchmarking Performance of an MPI-based Solver for 3D Elasticity Problems."
*Proceedings of the IEEE J. V. Atanasoff Conference*, IEEE CS Press, Los Alamitos CA, 260-265. - S. Sampson, K. Brewster, G. Jedlovec and W. Lapenta, 2006: "Use of AIRS/AMSU Retrieved Soundings to Improve Prediction of Gulf Moisture Return."
*Proc. 14th Conference on Satellite Meteorology and Oceanography*, Atlanta GA, American Meteorological Society, Boston. Conference CD, paper P5.4. - J. Snow, D. Wicke, M. Diesburg, G. Garzoglio and G. Davies, 2006: "D0 Data Reprocessing With SAM-Grid."
*Proc. International Conference on Computing in High Energy and Nuclear Physics*, Mumbai, India. - A. Striolo, 2006: "Adsorption of Model Surfactant-Like Copolymers on Nano-Patterned Surfaces."
*Journal of Chemical Physics*, 125, 094709.

Also featured in*Virtual Journal of Nanoscale Science & Technology*, 14 (12), Sep 18 2006.

Also featured in*Virtual Journal of Biological Physics Research*, 12 (6), Sep 15 2006. - A. Striolo, 2006: "Colloidal Brushes in Complex Solutions: Existence of a Weak Mid-Range Attraction Due to Excluded-Volume Effects."
*Physical Review E*, 64, 041401.

Also featured in*Virtual Journal of Nanoscale Science & Technology*, 14 (18), Oct 30 2006. - A. G. Striz, B. Kennedy, Z. Siddique and H. Neeman, 2006: "A Roadmap for Moderate Fidelity Conceptual Design with Multilevel Analysis and MDO."
*Proc. 47th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference*, Newport RI, AIAA 2006-1619. - R. M. Todd and J. R. Cruz, 2006: "Performance and Maximum-likelihood Bounds for Reed-Solomon Codes on Partial-response Channels.",
*Proc. Digests IEEE Internat. Magn. Conf.*, 295. - R. M. Todd and J. R. Cruz, 2006: "Performance of Adaptive Belief Propagation Decoding and Maximum-likelihood Bounds for Reed-Solomon Codes on Partial-response Channels.",
*IEEE Trans. Magn.*, 42 (10), 2555-2557. - M. Tong, 2006: "Ensemble Kalman Filter Assimilation of Doppler Radar Data for the Initialization and Prediction of Convective Storms." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma, May 2006.
- T. B. Trafalis, M. B. Richman and B. Santosa, 2006: "Learning networks for tornado detection."
*International Journal of General Systems*, 35, 93-107. - J. Wang, N. Mayr, W. Yuh, H. Zhang, J. Montebello, J. Grecula, D. H. Wu and S. Edwards, 2006: "TH-E-ValB-03: Tumor Volume Regression During Radiation Therapy to Predict Treatment Outcome for Cervical Cancer."
*Med. Phys*, 33, 2289. - J. Z. Wang, N. A. Mayr, W. T. C. Yuh, J. Montebello, H. Zhang, N. Gupta, J. Grecula and D. H. Wu, 2006: "Kinetic Model of Tumor Regression during Radiation Therapy of Cervical Cancer Patients."
*International Journal of Radiation Oncology, Biology, Physics*, 66 (3), S603. - D. H. Wu, Y. Gao, C. C. Lu and J. Suri, 2006: "Improvement to functional Magnetic Resonance Imaging (fMRI) Methods using Non-rigid Body Image Registration Methods for Correction in the Presence of Susceptibility Artifact Effects."
*Proc. IEEE Engineering in Medicine & Biology Society (EMBS) 2006*, (1), 1018-1020. - D. H. Wu, J. Suri, V. Magnotta, T. Przebinda and V. Debrunner, 2006: "Improved Method for Correction of Systematic Bias Introduced by the Sub-voxel Image Registration Process in Functional Magnetic Resonance Imaging (fMRI)."
*Proceedings SPIE Medical Imaging 2006*. - Q. Xu, S. Liu and M. Xue, 2006: "Background Error Covariance Functions for Vector Wind Analyses Using Doppler Radar Radial-velocity Observations."
*Quart. J. Roy. Meteor. Soc.*, 132, 2887-2904. - M. Xue, M. Tong and K. K. Droegemeier, 2006: "An OSSE Framework Based on the Ensemble Square-root Kalman Filter for Evaluating Impact of Data from Radar Networks on Thunderstorm Analysis and Forecast."
*J. Atmos. Ocean Tech.*, 23, 46-66. - M. Xue and W. Martin, 2006: "A High-resolution Modeling Study of the 24 May 2002 Case During IHOP. Part I: Numerical Simulation and General Evolution of the Dryline and Convection."
*Mon. Wea. Rev.*, 134, 149-171. - M. Xue and W. Martin, 2006: "A High-resolution Modeling Study of the 24 May 2002 Case During IHOP. Part II: Horizontal Convective Rolls and Convective Initiation.
*Mon. Wea. Rev.*, 134, 172-191.

## 2005

**2005 Publications Facilitated by OSCER Rounds/Help Sessions**

- M. A. Askelson and J. M. Straka, 2005: "An extension of the general response function to multiple dimensions: Part I: Framework for Interpreting the Response Function."
*Monthly Weather Review*, 133, 2117-2131. - M. A. Askelson, P. M. Pauley and J. M. Straka, 2005: "Response functions for arbitrary weight functions and data distributions. Part II: Response Function Derivation and Verification."
*Mon. Wea. Rev.*, 133, 2132-2147. - C. Byun, G. P. Guruswamy, A. L. Huizenga, H. J. Neeman and A. G. Striz, 2005: "High Fidelity Dynamic Analysis of Launch Vehicles on Single-Image Supercomputers."
*Proc. of the 46th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference.* - Z. Cui, B. Vieux, H. Neeman and F. Moreda, 2005: "Parallelization of a Distributed Hydrologic Model."
*Int. J. of Computer Applications in Technology*, Special Issue on Applications for High Performance Systems, 22 (1), 42-52. - Z.-N. Huang, 2005: "Design of New Molecular Dynamics Global Minimum Search Protocols for Mapping Energy Landscapes and Folding Conformations of Polypeptides and Mini-proteins." Ph.D. dissertation, Department of Chemistry & Biochemistry, University of Oklahoma.
- T. S. Ibrahim, 2005: "Homogeneous Distributions of RF Fields over the Human Head Volume at 7 Tesla."
*Proceedings of The 13th International Society of Magnetic Resonance in Medicine Annual Meeting*, Miami FL, May 2005, 2752. - T. S. Ibrahim, 2005: "RF Selective Excitation for Localized Imaging at 9.4 Tesla."
*Proceedings of The 13th International Society of Magnetic Resonance in Medicine Annual Meeting*, Miami FL, May 2005, 890. - T. S. Ibrahim, 2005: "Homogeneous Volume Head Coils for Ultra High Field MRI."
*Proceedings of The USNC/CNC/URSI North American Radio Science Meeting*, Washington DC, July 2005, 37.5. - J. Lavaja and M. Bagajewicz, 2005: "On A New Milp Model For The Planning Of Heat Exchanger Network Cleaning Part II: Throughput Loss Considerations." submitted.
- J. Lavaja and M. Bagajewicz, 2005: "On A New Milp Model For The Planning Of Heat Exchanger Network Cleaning Part III: Multiperiod Cleaning Under Uncertainty With Financial Risk Management." submitted.
- N. Liu and D. S. Oliver, 2005: "Critical evaluation of the ensemble Kalman filter on history matching of geologic facies."
*SPE Reservoir Eng. & Eval.*, 8 (6), 470-477. - Adrian Loftus, 2005: "Parameterized Mesoscale Forcing Mechanisms for Initiating Numerically-Simulated Isolated Multicellular Convection." M.S. thesis, University of Oklahoma.
- P. Mukherjee and Y. Wang, 2005: "Primordial Power spectrum reconstruction."
*JCAP*, 12, 007. DOI: 10.1088/1475-7516/2005/12/007. - J. Gao, C. Nuttall, C. Gilreath, M. Xue, K. Brewster and K. Droegemeier, 2005: "Multiple Doppler Wind Analysis and Assimilation via 3DVAR using Simulated Observations of the Planned CASA Network and WSR-88D Radars."
*Proc. 32nd Conf. Radar Meteorology*, Albuquerque NM. - V. Ranganath, 2005: "FDTD Analysis of RF Coils for EPRI and MRI Applications." M.S. thesis, School of Electrical & Computer Engineering, University of Oklahoma, December 2005.
- J. M. Straka, M. S. Gilmore, K. M. Kanak and E. N. Rasmussen, 2005: "A Comparison of the Conservation of Number Concentration for the Continuous Collection and Vapor Diffusional Growth Equations Using One and Two Moments."
*J. Appl. Meteor.*, 44, 1884-1889. - L. White and A. Shapiro, 2005: "Optimization of Wind Field Retrieval Procedures."
*Applied Mathematics and Computation*, 171, 25-52. - D. S. Wilson and L. L. Lee, 2005: "Molecular Recognition and Adsorption Equilibria in Starburst Dendrimers: Gas Structure and Sensing via Molecular Theory."
*Fluid Phase Equilibria*, 228-229, 197-205.

**Other 2005 Publications Facilitated by OU Research IT**

- E. J. Adlerman and K. K. Droegemeier, 2005: "The dependence of numerically simulated cyclic mesocyclogenesis upon environmental vertical wind shear."
*Mon. Wea. Rev.*, 133, 3595-3623. - K. Brewster, M. Hu, M. Xue and J. Gao, 2005: "Efficient assimilation of radar data at high resolution for short-range numerical weather prediction."
*WWRP International Symposium on Nowcasting and Very Short range Forecasting*, CDROM 3.06. - H. Dong and R. A. Wheeler, 2005: "Ultrafast Vibrational Energy Transfer from O-H Stretching Vibrations of Liquid Water."
*Chem. Phys. Lett.*, 413, 176-181. - K. K. Droegemeier, K. Brewster, M. Xue, D. Weber, D. Gannon, B. Plale, D. Reed, L. Ramakrishnan, J. Alameda, R. Wilhelmson, T. Baltzer, B. Domenico, D. Murray, M. Ramamurthy, A. Wilson, R. Clark, S. Yalda, S. Graves, R. Ramachandra, J. Rushing, E. Joseph and V. Morris, 2005: "Service-oriented Environments for Dynamically Interacting with Mesoscale Weather."
*Computing in Science and Engineering*, 7, 12-27. - M. Hu, 2005: "3DVAR and cloud analysis with WSR-88D level-II data for the prediction of tornadic thunderstorms." Ph.D. dissertation (advisor M. Xue), School of Computer Science, University of Oklahoma.
- M. Hu and M. Xue, 2005: "Impact of Configurations of Rapid Intermittent Assimilation of WSR-88D Radar Data for the 8 May 2003 Oklahoma City Tornadic Thunderstorm Case." extended abstract,
*Proc. of 17th Conf. Num. Wea. Pred.*, Amer. Metero. Soc., 13.2. - P. M. Le and D. V. Papavassiliou, 2005: "Turbulent Dispersion from Elevated Line Sources in Plane Channel and Plane Couette Flow."
*AIChE J.*, 51 (9), 2402-2414. - E. R. Mansell, D. R. MacGorman, C. L. Ziegler and J. M. Straka, 2005: "Charge Structure and Lightning Sensitivity in a Simulated Multicell Thunderstorm."
*J. Geophys. Res.*, 110, D12101. DOI: 10.1029/2004JD005287. - D. Petcu, D. V.zman and M. Paprzycki, 2005: "Porting CFD Codes towards Grids. A Case Study."
*Parallel Processing and Applied Mathematics 6th International Conference, PPAM 2005*, Poznan, Poland, September 11-14, 2005. Also in*Revised Selected Papers Series: Lecture Notes in Computer Science*, Vol. 3911,*Sublibrary: Theoretical Computer Science and General Issues*, R. Wyrzykowski, J. Dongarra, N. Meyer and J. Wasniewski, eds., 2006, ISBN: 3-540-34141-2. - A. Rahaman and R. A. Wheeler, 2005: "Wavelet Transforms for Determining Time-Dependent Vibrational Frequencies."
*J. Chem. Theory Comput.*, 1, 769-771. (One of the top 20 most accessed articles for 4th quarter 2005 and 3rd quarter 2005.) - Santosa, B. M. B. Richman and T. B. Trafalis, 2005: "Variable selection and prediction of rainfall from WSR-88D radar using support vector regression."
*WSEAS Transactions on Systems*, 4, 406-411. - A. Silveira, "Vortex Formation in Horizontally Elliptical Thermal Bubbles in an Ambient Vertical Shear." M.S. thesis (advisors J. Straka and K. Kanak), School of Meteorology, University of Oklahoma.
- J. L. Smedsmo, E. Foufoula-Georgiou, V. Vuruputur, F. Kong and K. Droegemeier, 2005: "On the vertical structure of modeled and observed deep convective storms: Insights for precipitation retrieval and microphysical parameterization."
*J. Appl. Meteor.*, 44, 1866-1884. - H.-J. Son, T. B. Trafalis and M. B. Richman, 2005: "Determination of the optimal batch size in incremental approaches: An application to tornado detection."
*Proc. International Joint Conference on Neural Networks*, IEEE, 2706-2710. - J. M. Straka and E. R. Mansell, 2005: "A Bulk Microphysics Parameterization with Multiple Ice Precipitating Categories."
*J. Appl. Meteor.*, 44, 445-466. - B. Thanneru, S. Lakshmivarahan and M. Richman, 2005: "Classification of tornadoes using linear discriminant analysis."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 15, 372–381. - M. Tong and M. Xue, 2005: "Ensemble Kalman Filter Assimilation of Doppler Radar Data with a Compressible Nonhydrostatic Model: OSSE Experiments."
*Mon. Wea. Rev.*, 133, 1789-1807. - M. Tong and M. Xue, 2005: "Simultaneous Retrieval of Microphysical Parameters and Atmospheric State Variables with Radar Data and Ensemble Kalman Filter Method." Extended abstract,
*17th Conf. Num. Wea. Pred., Amer. Meteor. Soc.*, Washington DC, P1.30. - T. B. Trafalis, B. Santosa and M. B. Richman, 2005: "Learning networks in rainfall estimation."
*Computational Management Science*, 2, 229-251. - T. B. Trafalis, B. Santosa and M. B. Richman, 2005: "Feature selection with linear programming support vector machines and applications to tornado prediction."
*WSEAS Transactions on Computers*, 4, 865-873. - T. B. Trafalis, B. Santosa and M. B. Richman, 2005: "Learning networks for tornado forecasting: A Bayesian perspective."
*Data Mining VI*,*WIT Transactions on Information and Communication Technologies*, 35, 5-14. - T. B. Trafalis, B. Santosa and M. B. Richman , 2005: "Feature selection of radar-derived attributes with linear programming support vector machines and branch and bound methods."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 15, 393-402. - D. S. Wilson and L. L. Lee, 2005: "Chemical Potentials and Phase Equilibria of Lennard-Jones Mixtures: A Self-Consistent Integral Equation Approach."
*Journal of Chemical Physics*, 123, 044512:1-10. - D. H. Wu, N. A. Mayr, Y. Karatas, R. Karatas, M. Adli, S. M. Edwards, J. D. Wolff, Movahed A, J. F. Montebello and W. T. C. Yuh, 2005: "Inter-observer variation in cervical cancer tumor delineation for image-based radiotherapy planning among and within different specialties."
*Journal of Applied Clinical Medical Physics*, 6 (4), 106-110. - D. H. Wu, N. A. Mayr, Y. Zheng, et al., 2005: "Regional cervical tumor microcirculatory response: Are there systematic differences in contrast uptake patterns with respect to the uterus?"
*Journal of X-ray Science*, 13 (2), 73-78. - Q. Xu, K. Nai and L. Wei, 2005: "An Innovation Method for Estimating Radar Radial-velocity Observation Error and Background Wind Error Covariances."
*Quart. J. Roy. Meteor. Soc.*, 133, 407-415.

## 2004

**2004 Publications Facilitated by OSCER Rounds/Help Sessions**

- A. Aseeri and M. Bagajewicz, 2004: "New Measures and Procedures to Manage Financial Risk with Applications to the Planning of Gas Commercialization in Asia."
*Computers and Chemical Engineering*, 28 (12), 2791-2821. - M. S. Gilmore, J. M. Straka and E. N. Rasmussen, 2004: "Precipitation uncertainty due to variations in precipitation particle parameters within a simple microphysics scheme."
*Mon. Wea. Rev.*, 132, 2610-2627. - M. Gilmore, J. M. Straka and E. N. Rasmussen, 2004: "Precipitation evolution in simulated deep convective clouds between liquid-only and simple ice and liquid phase microphysics."
*Mon. Wea. Rev.*, 132, 1897-1916, plus supplement. - Y. Gu and D. S. Oliver, 2004: "History Matching of the PUNQ-S3 Reservoir Model Using the Ensemble Kalman Filter."
*Proc. of the Society of Petroleum Engineers Annual Technical Conference and Exhibition 2004*(SPE 89942), Houston TX, September 25-29. - C. A. Hixson, J. Chen, Z.-N. Huang and R. A. Wheeler, 2004: "New perspectives on multiple-copy mean-field molecular dynamics methods."
*J. Molec. Graphics Modeling*, 22, 349-357 (invited review). - C. A. Hixson and R. A. Wheeler, 2004: "Practical multiple-copy methods for sampling classical statistical mechanical ensembles."
*Chem. Phys. Lett.*, 386, 330-335. - H.-W. Lao, H. J. Neeman and D. V. Papavassiliou, 2004: "A Pore Network Model for the Calculation of Non-Darcy Flow Coefficients in Fluid Flow Through Porous Media."
*Chemical Engineering Communications*, 191 (10), 1285-1322. - J. Lavaja and M. Bagajewicz, 2004: "A New MILP Model for the Planning of Heat Exchanger Network Cleaning."
*Industrial and Engineering Chemistry Research*, 43 (14), 3924 - 3938. - S. Marru, 2004: "A Grid-enabled Scientific Workbench for Integrated Predictive Earth System Simulation." M.S. thesis, School of Electrical & Computer Engineering, University of Oklahoma.
- S. Subramaniyam, H. J. Neeman and A. G. Striz, 2004: "Domain Decomposition in Displacement Based Multi-Level Structural Optimization."
*10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference.* - N. Thummala, 2004: "Convective heat transfer in microfluidics using Lagrangian methods and lattice Boltzmann simulations." M.S. thesis, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- R. M. Todd and J. R. Cruz, 2004: "Enforcing Maximum-Transition-Run Code Constraints and Low-Density Parity-Check Decoding."
*IEEE Trans. Magnetics*, 40, 3566 - 3571.

**Other 2004 Publications Facilitated by OU Research IT**

- D. T. Dawson II and M. Xue, 2004: "Impact of Mesoscale Data, Cloud Analysis on the Explicit Prediction of a MCS During IHOP 2002." Extended Abstract,
*20th Conf. Wea. Analy. Forecasting/16th Conf. Num. Wea. Pred., Amer. Meteor. Soc.*, Seattle, WA. - G. Garzoglio, I. Terekhov, J. Snow, S. Jain and A. Nishandar, 2004: "Experience producing simulated events for the DZero experiment on the SAM-Grid."
*Proc. International Conference on Computing in High Energy and Nuclear Physics*, Interlaken, Switzerland. - M. Hu, M. Xue, J. Gao and K. Brewster, 2004: "Prediction of Fort Worth tornadic thunderstorms using 3DVAR and cloud analysis with WSR-88D Level-II data."
*11th Conf. Aviation, Range, Aerospace and 22nd Conf. Severe Local Storms*, Amer. Meteor. Soc., CDROM J1.2. - P. Kakani, S. Lakshmivarahan and M. B. Richman, 2004: "Tornado detection algorithm using empirical orthogonal functions."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kernel eds.), ASME Press, 14, 125-130. - F. Kong, K. Droegemeier, V. Venugopal and E. Foufoula-Georgiou, 2004: "Application of Scale-recursive Estimation to Ensemble Forecasts: A Comparison of Coarse and Fine Resolution Simulations of a Deep Convective Storm." Preprints,
*20th Conf. on Wea. Analysis and Forecasting and 16th Conference on Num. Wea. Prediction*, Seattle, WA,*Amer. Meteor. Soc.* - N. Levit, K. K. Droegemeier and F. Kong, 2004: "High Resolution Storm-scale Ensemble Forecasts of the 28 March 2000 Fort Worth Tornadic Storms." Preprints,
*20th Conf. on Wea. Analysis and Forecasting and 16th Conference on Num. Wea. Prediction*,*Amer. Meteor. Soc.*, Seattle WA. - M. Mambelli, R. Gardner, Y. Smirnov, X. Zhao, G. Gieraltowski, E. May, A. Vaniachine, R. Baker, W. Deng, P. Nevski, H. Severini, K. De, P. McGuigan, N. Ozturk, M. Sosebee, 2004: "ATLAS Data Challenge Production on Grid3." SC04.
- P. Nutter, D. Stensrud and M. Xue, 2004: "Effects of coarsely-resolved and temporally-interpolated lateral boundary conditions on the dispersion of limitted-area ensemble forecasts."
*Mon. Wea. Rev.*, 132, 2358-2377. - P. Nutter, M. Xue and D. Stensrud, 2004: "Application of Lateral Boundary Condition Perturbations to Help Restore Dispersion in Limited-Area Ensemble Forecasts."
*Mon. Wea. Rev.*, 132, 2378-2390. - P. Nutter, M. Xue and D. Stensrud, 2004: "On the Need for Perturbed LBCs in Limited-area Ensemble Forecasts." Extended Abstract,
*20th Conf. Wea. Analy. Forecasting/16th Conf. Num. Wea. Pred.*,*Amer. Meteor. Soc.*, Seattle WA. - G. Pellicane, C. Caccamo, D. S. Wilson and L. L. Lee, 2004: "Replica Ornstein-Zernike Self-consistent Theory for Mixtures in Random Pores."
*Phys. Rev. E*, 69, 061202. - A. Rahaman and R. A. Wheeler, 2004: "Potential Energy Landscape for Conformationally Gated, Secondary Ubiquinone Binding in the Photosynthetic Reaction Center of Rhodobacter Sphaeroides."
*ChemPhysChem*, 5, 249-252. - D. Ren, 2004: "4DVAR Retrieval of Prognostic Land Surface Model Variables." Ph.D. dissertation (advisor M. Xue), School of Meteorology, University of Oklahoma.
- P. Sinha, S. Boesch, C. Gu, R. A. Wheeler and A. K. Wilson, 2004: "Harmonic Vibrational Frequencies: Scaling Factors for HF, B3LYP, and MP2 Methods in Combination with Correlation-Consistent Basis Sets."
*J. Phys. Chem. A*, 108, 9213-9217. - T. B. Trafalis, M. B. Richman and B. Santosa, 2004: "Dynamic data driven support vector machines applied to tornado detection."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kercel, eds.), ASME Press, 14, 559-564. - T. B. Trafalis, B. Santosa and M. B. Richman, 2004: "Rule-based support vector machine classifiers applied to tornado prediction."
*Computational Science-ICCS 2004*, Lecture notes in Computer Science, series LNCS 3036, part III, Springer, 678-684. - T. B. Trafalis, B. Santosa and M. B. Richman, 2004: "Bayesian neural networks for tornado detection."
*WSEAS Transactions on Systems*, 3, 3211-3216. - R. A. Wheeler, 2004: "Simulating Thermochemistry of p-Benzoquinone Reduction in Water and Ubiquinone Binding in the Photosynthetic Reaction Center." In
*Molecular Bioenergetics: Simulations of Electron, Proton, and Energy Transfer*, R. A. Wheeler, ed. ACS Symposium Series: Washington DC, 2004, 51-69.

## 2003

**2003 Publications Facilitated by OSCER Rounds/Help Sessions**

- B. A. Houshmand, H. J. Neeman and A. G. Striz, 2003: "Displacement Based Multilevel Structural Optimization and High Performance Computing."
*Proceedings of World Congress of Structural and Multidisciplinary Optimization 5.* - P. Mukherjee and Y. Wang, 2003: "Wavelets and Wilkinson Microwave Anisotropy Probe non-Gaussianity."
*ApJ*, 613, 51. - P. Mukherjee and Y. Wang, 2003: "Model independent reconstruction of the primordial power spectrum from WMAP data."
*ApJ*, 599, 1. - P. Mukherjee and Y. Wang, 2003: "Direct wavelet expansion of the primordial power spectrum."
*ApJ*, 598, 779. - P. Mukherjee and Y. Wang, 2003: "Wavelet band powers of the primordial power spectrum."
*ApJ*, 593, 38.

**Other 2003 Publications Facilitated by OU Research IT**

- P. Nutter, 2003: "Effects of Nesting Frequency and Lateral Boundary Perturbations on the Dispersion of Limited-area Ensemble Forecasts." Ph.D. dissertation (advisor M. Xue), School of Computer Science, University of Oklahoma.
- T. B. Trafalis, H. Ince and M. B. Richman, 2003: "Tornado detection with support vector machines."
*Proc. International Conference Computational Science - ICCS 2003*, P. M. A. Sloot, D. Abramson, A. Bogdanov, J. J. Dongarra, A. Zomaya and Y. Gorbachev, eds.), Springer, 202-211. - T. B. Trafalis, M. B. Richman and B. Santosa, 2003: "Tornado detection with kernel-based methods."
*Intelligent Engineering Systems Through Artificial Neural Networks*, (C. H. Dagli, A. L. Buczak, J. Ghosh, M. J. Embrechts, O. Ersoy and S. W. Kernel, eds.), ASME Press, 13, 677-682. - T. B. Trafalis, B. Santosa and M. B. Richman, 2003: "Prediction of rainfall from WSR-88D radar using kernel-based methods."
*International Journal of Smart Engineering System Design*, 5, 429-438. - R. A. Wheeler, H. Dong and S. E. Boesch, 2003: "Quasiharmonic Vibrations of Water, Water Dimer, and Liquid Water from Principal Component Analysis of Quantum or QM/MM Trajectories."
*ChemPhysChem*, 4, 382-384. (Featured in*Chemical & Engineering News*, Feb 9 2004, 30-31.) - R. A. Wheeler and H. Dong, 2003: "Optimal Spectrum Estimation in Statistical Mechanics."
*ChemPhysChem*, 4, 1227-1230. (Featured in*Chemical & Engineering News*, Feb 9 2004, 30-31.) - S. York, S. E. Boesch, R. A. Wheeler and R. Frech, 2003: "Vibrational Assignments of High Molecular Weight Linear Polyethylenimine (LPEI) Based on Monomeric and Tetrameric Model Compounds."
*Macromolecules*, 36, 7348-7351.

## 2002

**2002 Publications Facilitated by OSCER Rounds/Help Sessions**

- H.-W. Lao, 2002: "Stochastic estimation of porous media properties." M.S. thesis, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- H. Neeman, J. Mullen, L. Lee and G. Newman, 2002: "Supercomputing in Plain English: Teaching High Performance Computing to Inexperienced Programmers."
*Proceedings of the 3*^{rd}LCI International Conference on Linux Clusters: The HPC Revolution 2002. - V. Ramasubramanian, 2002: "Simulation of flow through porous media using finite difference methods." M.S. thesis, School of Chemical, Biological & Materials Engineering, University of Oklahoma.
- R. M. Todd, 2002: "Design of Low-Density Parity-Check Codes for Magnetic Recording Channels." Ph.D. dissertation, School of Electrical & Computer Engineering, University of Oklahoma.
- T. B. Trafalis, M. B. Richman and B. Santosa, 2002: "Prediction of rainfall from WSR-88D radar using support vector regression."
*Intelligent Engineering Systems Through Artificial Neural Networks*, ASME Press, 12, 639-644. (Novel Smart Engineering System Design Award) - T. B. Trafalis, A. White, B. Santosa and M. B. Richman, 2002: "Data mining techniques for improved WSR-88D rainfall estimation."
*Computers and Industrial Engineering*, 43, 775-786. - L. White and J. Castagna, 2002: "Stochastic Inversion of Fluid Modulus."
*Geophysics*, 67 (6), 1835-1843. - L. White and Y. Luo, 2002: "Estimation of Carbon Transfer Coefficients Using Duke Forrest Free Air CO2 Enrichment Data."
*Applied Mathematics and Computation*, 130, 101-120. - L. White, B. Vieux and D. Armand, 2002: "Surface Flow Model: Stochastic Inversion and Prediction."
*Advances in Water Resources*, 25, 317-324. - L. White and M. Zaman, 2002: "Stochastic inversion and prediction applied to concrete overlay systems."
*Applied Mathematics and Computation*, 128, 59-79.

## 2001

**2001 Publications Facilitated by OSCER Rounds/Help Sessions**

- C. A. Hixson and R. A. Wheeler, 2001: "Rigorous classical-mechanical derivation of a multiple copy algorithm for sampling statistical mechanical ensembles."
*Phys. Rev. E*, 64, 026701/026701-026701/026706. - H.-W. Lao, H. Neeman and D. Papavassiliou, 2001: "Stochastic Prediction of Porous Medium Properties."
*Proceedings of the 3rd International Conference on Computational Technologies for Fluid/Thermal/Chemical Systems with Industrial Applications.* - H. Neeman, H.-W. Lao, D. Simpson and D. Papavassiliou, 2001: "Multiscale Characterization of Porous Media Properties for Hydrocarbon Reservoir Simulation."
*Proceedings of the SPIE Conference on Commercial Applications for High-Performance Computing.*