Publications

Following published peer-reviewed research papers acknowledge support in part by COBRE award (P20GM135009).

2024

• E. Duran Sierra, S. Cheng, R. Cuenca Martinez, B. Ahmed, J. Ji, V. V. Yakovlev, M. Martinez, M. Al-Khalil, H. Al-Enazi, C. Busso, J.A. Jo, "Computer-assisted discrimination of cancerous and pre-cancerous from benign oral lesions based on multispectral autofluorescence imaging endoscopy," Biophoton. Discovery 1(2) 025001 (3 July 2024)
• Priyanka Vasanthakumari, Renan A. Romano, Ramon G. T. Rosa, Ana G. Salvio, Vladislav Yakovlev, Cristina Kurachi, Jason M. Hirshburg, and Javier A. Jo, "Pixel-level classification of pigmented skin cancer lesions using multispectral autofluorescence lifetime dermoscopy imaging," Biomed. Opt. Express 15, 4557-4583 (2024) PMC11427192
• Khan AF, Yuan H, Smith ZA, Ding L. Distinct Time-Resolved Brain-Wide Coactivations in Oxygenated and Deoxygenated Hemoglobin. IEEE Trans Biomed Eng. 2024 Aug;71(8):2463-2472. doi: 10.1109/TBME.2024.3377109. PMC11364165
• Sun X, Doose J, Faller J, McIntosh JR, Saber GT, Huffman S, Pantazatos SP, Yuan H, Goldman RI, Brown TR, George MS, Sajda P. Biomarkers predict the efficacy of closed-loop rTMS treatment for refractory depression.Res Sq [Preprint]. 2023 Dec 5:rs.3.rs-3496521. doi: 10.21203/rs.3.rs-3496521/v1. PMC10723538
• A.N. Frickenstein, N. Means, Y. He, L. Whitehead, T. Harcourt, Z. Malik, V. Sheth, L. Longacre, H. Taffe, L. Wang, I. McSpadden, C. Baroody, W. Yang, Y. D. Zhao, S. Wilhelm. “The predictive synthesis of monodisperse and biocompatible gold nanoparticles” ACS Applied Nano Materials, 2024, published online. DOI: 10.1021/acsanm.4c04838
• Yuxin He, Yifan Wang, Lin Wang, Wen Jiang, Stefan Wilhelm. “Understanding nanoparticle-liver interactions in nanomedicine” Expert Opinion on Drug Delivery, 2024, published online. DOI: 10.1080/17425247.2024.2375400 PMC11281865
• L. Wang, V. Sheth, K. Liu, P. Panja, A. N. Frickenstein, Y. He, W. Yang, A. G. Thomas, M. H. Jamei, J. Park, S. Lyu, N. D. Donahue, W. R. Chen, R. Bhattacharya, P. Mukherjee, S. Wilhelm. “Primary human breast cancer-associated endothelial cells favor interactions with nanomedicines” Advanced Materials, 2024, published online.DOI: 10.1002/adma.202403986 PMC11239290
• H. Young, Y. He, B. Joo, S. Ferguson, A. Demko, S. K. Butterfield, J. Lowe, N. F. Mjema, V. Sheth, L. Whitehead, M. J. Ruiz-Echevarria, S. Wilhelm. “Toward the scalable, rapid, reproducible, and cost-effective synthesis of personalized nanomedicines at the point-of care” Nano Letters, 2024, 24, 3, 920-928. DOI: 10.1021/acs.nanolett.3c04171 PMC11211002
• Lin Wang, Skyler Quine*, Alex N. Frickenstein, Michael Lee1, Wen Yang, Vinit Sheth, Margaret D. Bourlon, Yuxin He, Shanxin Lyu, Lucila Garcia-Contreras, Yan D. Zhao, Stefan Wilhelm. “Exploring and analyzing the systemic delivery barriers for nanoparticles”  Advanced Functional Materials, 2024, 34, 8, 2308446. DOI: 10.1002/adfm.202308446 PMC11142462
• Yifan Wang, Zhenyu Xiao, Zikai Wang, Dae Yong, Yifan Ma, Stefan Wilhelm, Hongmei Wang, Betty Y. S. Kim, Wen Jiang. “Multi-omics approaches to decipher the biological-nanomaterial multiverse”. Nature Reviews Bioengineering, 2024. ACCEPTED.
• K. Zhang, N. Abdoli, P. Gilley, Y. Sadri, X. Chen, T. Thai, L. Dockery, K. Moore, R. Mannel, Y.C. Qiu, "Developing a Novel Image Marker to Predict the Responses of. Neoadjuvant Chemotherapy (NACT) for Ovarian Cancer Patients", Computers in Biology and Medicine, 172, 108240-108247, 2024
• P. Gilley, K. Zhang, N. Abdoli, Y. Sadri, L. Adhikari, K.M. Fung, Y.C. Qiu, “Utilizing a Pathomics Biomarker to Predict the Effectiveness of Bevacizumab in Ovarian Cancer Treatment”, Bioengineering, 11(7), 678-687, 2024. PMC11273783
• P. Gilley, K. Zhang, N. Abdoli, Y. Sadri, L. Adhikari, K.M. Fung, Y.C. Qiu, "Development and Assessment of Multiple Illumination Color Fourier Ptychographic Microscopy for High Throughput Sample Digitization", Sensors, 24(14), 4505-4515, 2024 PMC11280611
• M. A. Jones, K. Zhang, R. Faiz, W. Islam, J. Jo, B. Zheng, Y.C. Qiu, "Pseudo Color Image Generation for Improving the Performance of Deep Transfer Learning-based Computer Aided Diagnosis Schemes in Breast Mass Classification", Journal of Imaging Informatics in Medicine, 1-10, 2024
• X. Ma, M. Moradi, X. Ma, Q. Tang, M. Levi, Y. Chen, H. K. Zhang. Large area kidney imaging for pre-transplant evaluation using real-time robotic optical coherence tomography. Communications Engineering 3, 122 (2024). https://doi.org/10.1038/s44172-024-00264-7 PMC10602184
• C. Wang, H. Cui, Q. Zhang, P. Calle, Y, Yan, F. Yan, K.-m. Fung, S. Patel, Z. Yu, S Duguay, W. Vanlandingham, A Jain, C. Pan, and Q. Tang, Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning. Communications Engineering 3, 107 (2024). https://doi.org/10.1038/s44172-024-00254-9 PMC10690309
• E. Parasido, P. Ribeiro, R. M. Chingle, T. Rohwetter, N. Gupta, G. Avetian, E. Bladelli, M. Pierobon, Y. Chen, Q. Tang, M. Schnermann, O. Rodriguez, D. Robbins, T. R. Burke Jr., C. Albanese, and C. Ihemelandu, Enhancing precision in colorectal cancer surgery: development of an LGR5-targeting RSPO1 peptide mimetic as a contrast agent for intraoperative fluorescence molecular imaging. Cell Cycle, 1–12. https://doi.org/10.1080/15384101.2024.2364578
• W. Islam, N. Abdoli, TE. Alam, M. Jones, BM. Mutembei, F. Yan, and Q. Tang, A Neoteric Feature Extraction Technique to Predict the Survival of Gastric Cancer Patients. Diagnostics. 2024; 14(9):954. https://doi.org/10.3390/diagnostics14090954 PMC11083029
• F. Yan, B. Mutembei, T. Valerio, G. Gunay, J. Ha, Q. Zhang, C. Wang, E. Mercyshalinie, Z. Alhajeri, F. Zhang, L. Dockery, X. Li, R. Liu, D. Dhanasekaran, H Acar, W. Chen, and Q. Tang, "Optical coherence tomography for multicellular tumor spheroid category recognition and drug screening classification via multi-spatial-superficial-parameter and machine learning," Biomed. Opt. Express 15, 2014-2047 (2024). https://doi.org/10.1364/BOE.514079 PMC11019711
• F. Yan, Z. Alhajeri, A.  Nyul-Toth, C. Wang, Q. Zhang, E. Mercyshalinie, J. DelFavero, C. Ahire, B. Mutembei, S. Tarantini, A. Csiszar, and Q. Tang, Dimension-based quantification of aging-associated cerebral microvasculature determined by optical coherence tomography and two-photon microscopy. J. Biophotonics 2024. e202300409. https://doi.org/10.1002/jbio.202300409 PMC10961197
• F. Yan, C. Wang, Y. Yan, Q. Zhang, Z. Yu, S. Patel, K. Fung, and Q. Tang*, Polarization-sensitive optical coherence tomography for renal tumor detection in ex vivo human kidneys. Optics and Lasers in Engineering 2024, 173, 107900. https://www.sciencedirect.com/science/article/pii/S0143816623004293?dgcid=author#abs0002 PMC10653339
• C. Wang, Y. Liu, P. Calle, X. Li, R. Liu, Q. Zhang, F. Yan, K.-m. Fung, A.K. Conner, S. Chen, C. Pan, and Q. Tang, Enhancing Epidural Needle Guidance using a Polarization-Sensitive Optical Coherence Tomography Probe with Convolutional Neural Networks. J. Biophotonics. e202300330. 2024 https://doi.org/10.1002/jbio.202300330 PMC10922538

• K. Caughlin, R. Cuenca Martinez, G P Tortorelli, K E Higgins, R Faram, JA Jo, C Busso. Understanding Bias in Multispectral Autofluorescence Lifetime Imaging: Are Models Sensitive to Oral Location? IEEE Engineering in Medicine and Biology Society (EMBS 2024), Orlando, FL, USA
• K Caughlin, R Cuenca Martinez, G P Tortorelli, YS L Cheng, R Hegde, C Abraham, J M Plemons, Y S Wang, V Woo, J A Jo, C Busso. Beyond Dysplasia: Uncovering Structure in Oral Potentially Malignant Diseases with Unsupervised Contrastive Learning. IEEE Engineering in Medicine and Biology Society (EMBS 2024), Orlando, FL, USA
• J. Nelson, X. Chen, Y. Li, F. H. Omoumi, M. D. Wong, H. Liu, "Assessing detectability improvement of a self-supervised noise reduction algorithm for phase-sensitive breast tomosynthesis phantom images", SPIE 12843, Biophotonics and Immune Responses XIX, p1284309-1-6, 2024
• Smith Q, Farrand J, Limvaree I, Edwards S, Stephens T, Dunn IF, Connor A, Ding L, Yuan H*: Test-retest Reliability of Neurovascular Coupling and Impairment in Epilepsy Measured by fNIRS and EEG. Conf Proc IEEE Eng Med Biol Soc. 2024.
• Ding L, Yuan H: Fast Dynamics of Brain-wide Patterns on Neuronal Oscillations.  Conf Proc IEEE International Conference on Acoustics, Speech, and Signal Processing. 2024.
• P. Gilley, K. Zhang, N. Abdoli, Y. Sadri, X. Chen, K.M. Fung, H. Liu, Y.C. Qiu, "Evaluating the Imaging Quality of Multiplexed Illumination Fourier Ptychography Microscopy”, Proc. of SPIE 12843, Biophotonics and Immune Responses XIX, 12843061-6, 2024
• Y. Sadri, N. Abdoli, K. Zhang, P. Gilley, X. Zhao, K. Prather, H. Shakir, Y.C. Qiu, “Developing a CT-image-based Clinical Marker to Predict Vasospasm for Aneurysmal Subarachnoid Hemorrhage Patients”, Proc. of SPIE 12843, Biophotonics and Immune Responses XIX, 12843041-6, 2024
• C. Wang, H. Cui, Q. Zhang, P. Calle, F. Yan, E. Mercyshalinie, K. Fung, A. Jain, C. Pan, and Q. Tang* "Feasibility of using polarization-sensitive optical coherence tomography endoscope in kidney tumor biopsy guidance", Proc. SPIE 12817, Advanced Photonics in Urology 2024, 128170C (13 March 2024); https://doi.org/10.1117/12.3001367
• F. Yan, E. Selvarai Mercyshalinie, Q. Zhang, C. Wang, Z. Yu, K. Fung, and Q. Tang* "Pre-transplantation assessment of human lungs using polarization-sensitive optical coherence tomography", Proc. SPIE PC12830, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXVIII, PC128301U (13 March 2024); https://doi.org/10.1117/12.3001984
• F. Yan, C. Wang, Q. Zhang, E. Mercyshalinie, Z. Yu, K. Fung, Q. Tang*. “Pre-Transplantation Evaluation of Human Liver Using Polarization-Sensitive Optical Coherence Tomography.” 2023 IEEE Photonics Conference, Orlando, FL (Oral Presentation, Nov 12 – 16, 2023). DOI: 10.1109/IPC57732.2023.10360789
• F. Yan, C. Wang, B. Mutembei, Z. Alhajeri, Q. Zhang, E. Mercyshalinie, Z. Yu, Y. Chen, K. Fung, Q. Tang*. Evaluation of Human Kidney for Transplantation Using Polarization-Sensitive Optical Coherence Tomography (Conference Oral). Optica Imaging Congress. August 14 – 17, 2023. Boston, Massachusetts, USA. 

• Madden D, Kauten A, Limvaree IA, Huang M, Stephens TM, Bauer AM, Dunn IF, Yuan H*. Functional Connectivity of Lesional and Perilesional Tissue Before and After Resection of Brain Gliomas. Annual Meeting of the Society for Neuroscience, Baltimore MD, October 2024.
• Sun X, Doose J, Faller J, Mclntosh JR, Saber GT, Huffman S, Pantazatos SP, Yuan H, Goldman RI, Brown TR, George MS, Sajda P. Increased entrainment and decreased excitability predict efficacious treatment for major depressive disorder patients given EEG-synchronized rTMS. 2024 NYC Neuromodulation Conference, New York City, NY, August 2024.
• Huang M, Ding L, Yuan H*: Effect of Emotional Music on Function Connectivity in Major Depressive Disorder: A Machine Learning Approach. 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Orlando, FL, USA, July 2024.
• Ben-Haim S, Penzel T, Chang C, Ding L, Yuan H*. Translating the state of art in brain research to clinical care of brain disorders. 46th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference, Orlando, FL, USA, July 2024.
• Yuan H*. Multimodal imaging of human brain networks in brain disorders. 46th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference, Orlando, FL, USA, July 2024.
• Bucknor JJ, Tran A, Yuan H*. Automated pipeline analysis of fMRI data in brain tumor patients and healthy controls. OU Undergraduate Research Day, Norman OK, April 2024.
• Madden D, Yuan H*. Functional connectivity in brain glioma patients as a predictor for surgical outcomes. OU Undergraduate Research Day, Norman OK, April 2024.
• Mian I, Limvaree IA, Yuan H*. Comparing resting-state functional magnetic resonance imaging and Wada test memory lateralization in epileptic patients. OU Undergraduate Research Day, Norman OK, April 2024.
• Sun X, Doose J, Faller J, Mclntosh JR, Saber GT, Huffman S, Pantazatos SP, Yuan H, Goldman RI, Brown TR, George MS, Sajda P. Enhanced Entrainment and Reduced Excitability as Predictive Neurophysiological Markers of Closed-look EEG-rTMS Treatment for Major Depressive Disorder. Annual Meeting of the Biomedical Engineering Society, Washington, D.C, November 2023.
• Limvaree IA, Madden D, Stephens TM, O’Neal Swan C, Scott J, Dunn IF, Conner A, Yuan H*. Comparing Resting-State fMRI Connectivity and Wada Test Memory Lateralization in Epileptic Patients. Annual Meeting of the Biomedical Engineering Society, Seattle WA, October 2023.
• Madden D, Stephens TM, Dunn IF, Yuan H*. Functional Connectivity of Lesional and Perilesional Tissue Before and After Resection of Brain Gliomas. Annual Meeting of the Biomedical Engineering Society, Seattle WA, October 2023.
• Smith Q, Edwards S, Limvaree L, Ding L, Yuan H*. Test-Retest Reliability of Multimodal Imaging by fNIRS-EEG in Humans. Annual Meeting of the Biomedical Engineering Society, Seattle, Washington, October 2023.
• Edwards S, Smith Q, Wenger MJ, Kuan-Celarier A, Walker J, Yuan H*. Test-retest Reliability of Neurovascular Coupling Measurements for the Evaluation of Treatment-Related Effects in Cancer Patients. Annual Meeting of the Biomedical Engineerin Society, Seattle, Washington, October 2023.
• Connor Baroody, Stefan Wilhelm. “Three-dimensional super-resolution microscopy for label-free nanoparticle imaging in 2d and 3d cancer models” 2024 Oklahoma Cell Biology Symposium, Oklahoma City, OK, USA
• Sam Ferguson, Stefan Wilhelm. “Quantitative analysis of poly[lactic-co-glycolic acid] nanoparticles produced by microfluidic synthesis” Biomedical Engineering Society (BMES) Annual Meeting, Baltimore, MD, USA, 2024
• Alex Frickenstein, Stefan Wilhelm. “Surface modification and predictive synthesis of monodisperse gold nanoparticles” Biomedical Engineering Society (BMES) Annual Meeting, Baltimore, MD, USA, 2024
• Bea Nazareno, Stefan Wilhelm. “Impact of tumor microenvironment on nanoparticle-cell interactions” Summer Undergraduate Research Program, OUHSC, University of Oklahoma, Oklahoma City, OK, USA
• Penta D, Dey D, Benbrook DM, Wang L, Bieniasz M, Dockery LE#, Rai R#. (2023). Mebendazole as a Promising Treatment to Overcome Cisplatin-resistance in Ovarian Cancer: In-Vitro and Preclinical Insights. END 2 Cancer. OU Health, Stephenson Cancer Center. Nov 30-Dec 1.
• Rai, R., Penta, D., Dey, D., Benbrook, D. M., Wang, L., Bieniasz, M., & Dockery, L. E. (2024). Efficacy and mechanism of mebendazole for ovarian cancer therapy. Cancer Research, 84(6_Supplement), 4671-4671.; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024.
• Penta D, Dey D, Benbrook DM, Wang L, Bieniasz M, Chandra V, Dockery LE#, Rai R#. (2024).  Repurposing Mebendazole to Combat Chemoresistance in Ovarian Cancer. 15th Biennial Ovarian Cancer Research Symposium in Seattle, WA on September 20-21.
• F. Yan, C. Wang, B. Mutembei, Z. Alhajeri, Q. Zhang, E. Selvaraj Mercyshalinie, Z. Yu, K. Fung, Q. Tang. “Pre-transplantation evaluation of human liver using polarization-sensitive optical coherence tomography”, SPIE Translational Biophotonics and Additive Manufacturing, September 16-18, 2024.
• C. Wang, Y. Liu, P. Calle, Q. Zhang, F. Yan, E. Mercyshalinie, K. Fung, S. Chen, C. Pan, Q. Tang*, "Deep learning aided epidural needle guidance by a forward-view polarization-sensitive optical coherence tomography system", SPIE Translational Biophotonics and Additive Manufacturing 2024 (September 16-18).
• F. Yan, Q. Zhang, C. Wang, E. Selvaraj Mercyshalinie, Z. Yu, K. Fung, Q. Tang. “Pre-Transplantation Evaluation of Human Liver Using Polarization-Sensitive Optical Coherence Tomography”, 2024 American Transplant Congress, June 01-05.
• F. Yan, Q. Zhang, B. Mutembei, Z. Alhajeri, C. Wang, E. Selvaraj Mercyshalinie, Z. Yu, Y. Chen, K. Fung, Q. Tang. “Evaluation of Donor Kidney for Transplantation Using Polarization-Sensitive Optical Coherence Tomography”, 2024 American Transplant Congress, June 01-05.
• C. Wang, Y. Liu, P. Calle, Q. Zhang, F. Yan, E. Mercyshalinie, K. Fung, S. Chen, C. Pan, and Q. Tang* "Epidural needle guidance using a forward-view polarization-sensitive optical coherence tomography probe", Proc. SPIE PC12830, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXVIII, PC1283015 (13 March 2024); https://doi.org/10.1117/12.3005243
• S. Ton, F. Yan, J. Ha, Y. Yan, C. Wang, B. Mutembei, Z. Alhajeri, A. Mcniel, A. Keddissi, Q. Zhang, M, Jayaraman, D. Dhanasekaran, Q. Tang*. Optical Coherence Tomography of Tumor Spheroids Identifies Candidates for Drug Repurposing in Ovarian Cancer (Poster Presentation). American College of Physicians Internal Medicine Annual Conference. April 18 - April 20, 2024. Boston, Massachusetts, USA.
• S. Ton, F. Yan, J. Ha, Y. Yan, C. Wang, B. Mutembei, Z. Alhajeri, A. Mcniel, A. Keddissi, Q. Zhang, M, Jayaraman, D. Dhanasekaran, Q. Tang*. Optical Coherence Tomography of Tumor Spheroids Identifies Candidates for Drug Repurposing in Ovarian Cancer (Poster Presentation). Society of Interventional Oncology Annual Conference. January 25 - January 29, 2024. Long Beach, California, USA.
• Z. Alhajeri, F. Yan, Q. Zhang, C. Wang, B. Mutembei, A. Toth, S. Tarantini, A. Csiszar, and Q. Tang*. Monitoring Characteristics Of Mouse Cerebral Microvasculature With Optical Coherence Tomography Angiography and 3D Vasculature Analysis With Three Photon Microscopy (Poster Presentation). End2Cancer Conference. November 30 - December 1, 2023. Oklahoma City, Oklahoma, USA.
• F. Yan, C. Wang, Q. Zhang, E. Mercyshalinie, Z. Yu, K. Fung, and Q. Tang*. Pre-Transplantation Evaluation of Human Liver Using Polarization-Sensitive Optical Coherence Tomography (Conference Oral). Biomedical Engineering Society (BMES) Annual Meeting. October 11 – 14, 2023. Seattle, WA, USA.
• Z. Alhajeri, F. Yan, Q. Zhang, C. Wang, B. Mutembei, A. Toth, S. Tarantini, A. Csiszar, and Q. Tang*. Dimension-based Quantification of Aging-Associated Cerebral Microvasculature Determined by Optical Coherence Tomography Angiography and Two-Photon Microscopy. Biomedical Engineering Society (BMES) Annual Meeting. October, 2023. Seattle, WA, USA.
• F. Yan, R. Rai, C. Wang, Q. Zhang, E. Mercyshalinie, L. Dockery, and Q. Tang*. Evaluation of Repurposing Anti-Parasite Drugs for Ovarian Cancer from Cell to Animal Level Using Optical Coherence Tomography (Conference Poster). Biomedical Engineering Society (BMES) Annual Meeting. October 11 – 14, 2023. Seattle, WA, USA.
• C. Wang, Q. Zhang, P. Calle, Y. Liu, F. Yan, J. Reynolds, H. Cui, E. Mercyshalinie, K. Fung, C. Pan, Q. Tang*, Deep learning aided optical coherence tomography probe to help the guidance in sarcoma biopsy, BMES 2023 Annual Meeting, October 11-14, 2023, Seattle, WA, USA.
• C. Wang, Q. Zhang, P. Calle, Y. Liu, H. Cui, J. Reynolds, E. Mercyshalinie, K. Fung, C. Pan, Q. Tang*, Feasibility of using polarization-sensitive optical coherence tomography endoscope in liver tumor biopsy guidance, BMES 2023 Annual Meeting, October 11-14, 2023, Seattle, WA, USA.

2023

• Zhang K, Gilley P, Abdoli N, Chen X, Fung KM, Qiu Y., Using symmetric illumination and color camera to achieve high throughput Fourier ptychographic microscopy., J Biophotonics.  2023 May;16(5): e202200303., Published online: May 2023. PMID: 36522293.;PMCID: PMC10191880 (available on 2024-05-01); DOI: 10.1002/jbio.202200303.
• Mettenbrink EM, Yang W, Wilhelm S., Bioimaging with Upconversion Nanoparticles, Adv Photonics Res. 2022 Dec, 3: (12). Published online: 2022 Sept 9. PMID: 36686152; PMCID: PMC9858112.; DOI: 10.1002/adpr.202200098.
• Jones MA, Sadeghipour N, Chen, X Islam W, Zheng B., A multi-stage fusion framework to classify breast lesions using deep learning and radiomics features computed from four-view mammograms,  Med Phys Med Phys. 2023 Dec; 50(12):7670-7683. Published online: 2023 Apr 21. PMID 37083190; PMCID: 0589387 (available on 2024-10-21); DOI: 10.1002/mp.16419.
• Haddad M, Frickenstein A, Wilhelm S., High-Throughput Single-Cell Analysis of Nanoparticle-Cell Interactions, Trends Analyt Chem. 166 2023 Sept, 7520860. Published online: 2023 Jul 10. PMID: 37520860; PMCID: PMC10373476 (available on 2024-09-01); DOI:10.1016/j.trac.2023.117172.
• Yan F, Ha JH, Yan Y, Ton SB, Wang C, Mutembei B, Alhajeri ZA, McNiel AF Keddissi, AJ, Zhang Q, Jayaraman M, Dhanasekaran DN, Tang Q., Optical Coherence Tomography of Tumor Spheroids Identifies Candidates for Drug Repurposing in Ovarian Cancer, IEEE Trans Biomed Eng. June; 2023. Published online: 2023 May 19. PMID: 37015385; PMCID:PMC10482500; DOI:10.1109/TBME.2022.3231835.
• Zhang F, Khan A, Ding L, Yuan H., Network organization of resting-state cerebral hemodynamics and their aliasing contributions measured by functional near-infrared spectroscopy, Journal of neural engineering. 2023 Jan; 18:20(1). Published online: 2023 Jan 18. PMID 36535032; PMCID: PMC9855663; DOI:10.1088/1741-2552/acaccb.
• Zhang F, Reid A, Schroeder A, Ding L, Yuan H. Controlling jaw-related motion artifacts in functional, near-infrared spectroscopy, J Neurosci Methods. 2023 Mar 15, Published online: 2023 Feb 2, PMID: 36738847; PMC: 10681683; DOI: 10.1016/j.jneumeth.2023.109810.
• Frickenstein AN, Mukherjee S, Harcourt T, He Y, Sheth V, Wang L, Malik Z, Wilhelm S., Quantification of monodisperse and biocompatible gold nanoparticles by single-particle, ICP-MS, Anal Bioanal Chem.  July 2023. Published online: 2023 Jan 20. PMID: 36670192; PMCID: PMC10645370; DOI: 10.1007/s00216-023-04540-x.
• Sheth V, Chen X, Mettenbrink EM, Yang W, Jones, MA M’Saad O, Thomas AG, Newport RS, Francek E, Wang L, Frickenstein AN, Donahue ND, Holden A, Mjema NF, Green DE, DeAngelis PI, Bewersdorf J, Wilhelm S., Quantifying Intracellular Nanoparticle, Distributions with Three-Dimensional Super-Resolution Microscopy,  ACS Nano. 2023 May; 9:17 (9):8376-8392. Published online: 2023 Apr 18. PMID: 37071747; PMCID: PMC10643044; DOI:10.1021/acsnano.2c12808.
• Mirniaharikandehei S, Abdihamzehkolaei A, Choquehuanca A, Aedo M Pacheco W, Estacio L, Cahui V, Huallpa  L, Quiñonez K, Calderón V, Gutierrez AM, Vargas A, Gamero D,Castro-Gutierrez E, Qiu Y, Zheng B, Jo JA., Automated Quantification of Pneumonia Infected Volume in Lung CT Images: A Comparison with Subjective Assessment of Radiologists, Bioengineering (Basel, Switzerland). 2023 Mar; 02:10 (3). Published online: 2023 Mar 2. PMID: 36978712; PMCID: PMC10044796; DOI: 10.3390/bioengineering10030321.
• Yan F, Wang C, Yan Y, Zhang Q, Yu Z, Patel SG, Fung KM, Tang Q., Polarization-sensitive optical coherence tomography for renal tumor detection in ex vivo human kidneys, Opt Lasers Eng. 2024 Feb; 173: 2023. Published online: Epub. 2023 Oct 23, PMID: 37982078; PMCID: PMC10653339 (available on 2025-02-01). DOI:10.1016/j.optlaseng.2023.107900.
• Liu K, Sadeghipour N, Hoover AR, Valero TI, Furrer C, Adams J, Naqash AR, Zhao M, Papin, JF Chen, WR.  Single-cell transcriptomics reveals that tumor-infiltrating natural killer cells are activated by localized ablative immunotherapy and share anti-tumor signatures. bioRxiv2023. May; 3:2023.05.02.539163. Published online: 2023 May 3. PMID: 37205468; PMCID: PMC10187236; DOI: 10.1101/2023.05.02.539163.

2022

• Danala G, Desai M, Ray B, Heidari M, Maryada SKR, Prodan CI, Zheng B., Applying Quantitative Radiographic Image Markers to Predict Clinical Complications After Aneurysmal Subarachnoid Hemorrhage., A Pilot Study. Ann Biomed Eng. 2022 April;2r; 50 (4):413-425, Published online: 2022 Feb 2. PMID: 35112157; PMCID:PMC8918043; DOI:10.1002/adpr.202200098.
• Danala G, Ray B, Desai M, Heidari M, Mirniaharikandehei S, Maryada SKR, Zheng B. Developing new quantitative CT image markers to predict prognosis of acute ischemic stroke patients,  Journal of X-Ray Science and Technology; 2023 Jan; 1 30:30 (3):459-475. Published online: 2022 April 15. PMID:35213340. PMCID:9097354. DOI:10.3233/XST-221138.
• Chen X, Wang X, Zhang K, Fung KM, Thai TC, Moore K, Mannel RS, Liu H, Zheng B, Qiu Y., Recent advances and clinical applications of deep learning in medical image analysis. Med Image Anal. 2022 Jul; 79:102444. Published online: 2022 Apr 4. PMID: 35472844;  PMCID: PMC9156578. DOI: 10.1016/j.media.2022.102444.
• Donahue ND, Sheth V, Frickenstein AN, Holden A, Kanapilly S, Stephan C, Wilhelm S. Absolute Quantification of Nanoparticle Interactions with Individual Human B Cells by Single Cell Mass Spectrometry. Nano Lett 2022 May 25;22(10):4192-4199; Published online: 2022 May 25. PMID: 35510841. PMCID: PMC9486247. DOI: 10.1021/acs.nanolett.2c1037. 
• Danala G, Maryada SK, Islam W, Faiz R, Jones M, Qiu Y, Zheng B.  A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods. Bioengineering (Basel). 2022 Jun; 15:9 (6). Published online: 2022 Jun 15. PMID: 35735499. PMCID: PMC9219621. DOI: 10.3390/bioengineering9060256.
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