Scott's Botanical Links - Subject Index
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Descriptions of the sites are linked by this graphic () to previously appearing daily descriptions. If that link failed in my monthly checking of the links, the following symbol will be shown instead (). Particularly authoritative sites are marked with an exclamation point ( - I am still in the process of adding these). All links were last checked on 9 June 1999 (Total links checked: 3015) by CyberSpyder Link Check. This month's entries are resting in a temporary file until the end of the month.
Databases:
- Botanical Literature:
- EPA ECOTOX Database System - database of toxicologically active chemicals on plants
- JSTOR - historical botany and scientific journals
- AGRICOLA - scientific literature database
- Index to American Botanical Literature - literature searches
- PubMed Central - electronic journal site for all of the sciences
- General:
- National Plant Germplasm System (NPGS) - has the goal of capturing plant diversity with potential uses in disease resistance, biochemistry, resistance to environmental stress
- Guide to Poisonous and Toxic Plants - list including house, garden, ornamental and wild plants of the continental US
- Index Nominum Supragenericorum Plantarum Vascularium - Valid names above the generic level
- Famine Foods Database - edible non-crop plants that have been consumed in times of famine
- Plants for the People - has the goal of providing an illustrated checklist to the world plants
- Global Biodiversity Information Facility (GBIF) - producing a metadatabase that will span biodiversity, molecular, genetic, systematic, ecological and ecosystem levels worldwide
- PLANTS DATABASE: National Database - metadata include checklists, distributional data, characteristics, images, references, crop information, links and more
- SERPIN: Southeastern Rare Plant Information Network - botanical data, literature, other resources relating to state or federal listed threatened or endangered plants
- The Evolutionary History of Green Plants - plant-centered tree of life addressing early green plant origins
- Plant diversity in Paraguay - database of Paraguayan plant specimens
- Deep Time Project - project is to integrate angiosperm phylogenies of living and extinct plants
- Index to Plant Chromosome Numbers (IPCN) - sporophytic, gametophytic and base chromosome counts
- Plants Database (part of Dave's Garden) - images and plant data
- Nature Conservancy Carribean Island Metadata - vegetation maps of Carribean islands from GIS data
- ETI's World Biodiversity Database - databases to species, taxonomists and molecular biology resources
- HortPlex Plant Database - search plants by scientic or common name
- Plant Kaleidoscope - database of cultivated rare and unusual plants in Europe
- Flora Accounts Online - features online Flora of China, Flora of North America, and Moss Flora of China
- Global Invasive Species Database - information about weedy & nuisance species that replace native plants & animals
- Deep Green Hyperbolic Trees - interactive phylogenetic tree of green life
- Specimen MAnagement System for California Herbaria (SMASCH) Project - model herbarium database for California plants
- DRYAD - a database of trees - search trees by genus or characteristics
- British Wildflowers Online - search engine driven site for identification of wildflowers
- Canadian Poisonous Plants Information System - databases to common poisonous plants found in the home and outdoors in Canada
- Plant Viruses Online - virus database with information on host susceptibility and relationships, with electronmicrograph images, DNA sequences, other info
- International Plant Names Index (IPNI) - names and associated bibliography of primary sources for plant taxa
- Kew Record of Taxonomic Literature - literature references by taxon
- Proposals to Conserve and/or Reject Plant Names - database of challenged scientific names
- US Botanical Type Specimen Register - United States National Herbarium (US) collection information
- Material Safety Data Sheets (MSDS) - chemical reference site
- Plant Diversity at Bullshoals Field Station - wildflower plant images and habitat database
- University of Tennessee Herbarium (TENN) - model bryophyte, fungi and vascular plant herbarium site, with maps and database
- Common Names Look-up Index - 25,000 listings currently; see also the linked glossary!
- Desert USA Flora - images and data on common arid plants of North America
- Threatened Plants of the World - rare, endangered, vulnerable, and extinct plants
- Gymnosperm Database - Descriptions of 1,000 taxa.
- National Biological Information Infrastructure - BioBot search engine and links to government and privately maintained biological information.
- eNature.com - Online Audubon Field Guides
- MDchoice.com - Access to 6,000 medical journals, articles, and databases.
- Multisite Living Collections Searches - search for living plants
- BoDD - the Botanical Dermatology Database - chemical nature of poisons, plant dermatitis and allergy
- WHACHAMACALIT! The Common Name - dictionary of common names
- Peter Bostock's Botanical Latin Home Page - Latin translation program
- Fire Effects Information System (FEIS) - species specific plant research information & glossary
- National Biological Information Infrastructure - Gateway to biological data maintained by government agencies and cooperating partners.
- The USGS-NPS Vegetation Mapping Program - Protocols and methods used in mapping vegetation communities in U.S. National Parks.
- University of Connecticut Plant Database - Woody ornamentals database featuring plants grown in the northeastern United States.
- Botanical Society of America Online Image Collection - instructional images
- NeoFlora Database - Cultivated plant database.
- USDA PPQ Scientific Services - Federal lists of noxious weeds, plant viruses, and endangered species.
- Taxonomy of Landscape Plants - nomenclature & identification site with database of ornamental plants; useful taxonomic links
- Poisonous Plants of Nova Scotia - medicines, toxins and poisons from native plants
- Plants Toxic to Animals - databases to common poisonous plants found outdoors
- Park Search: The Outdoors at Your Fingertips - database on national & state parks, forests and wildlife refuges
- Atlas Florae Europaeae Database - software for mapping and analyzing plant distribution, w/ statistical tools
- Endangered Species Home Page - U.S. Fish and Wildlife Service
- INVADERS Database System - invading exotic species of the Northwest US
- Plant Names Project - implementation of a project for the 2000s
- Agricultural Network Information Center - online references for plant information
- Andean Botanical Information System - Floristics and Taxonomy of the Flora of the Andes
- Integrated Taxonomic Information System (ITIS) - database of scientifically valid names ot taxa
- Online Vegetation and Plant Distribution Maps - encyclopedic set of map links, including fossils
- Molecular:
- International Rice Genome Sequencing Project (IRGSP) - genomic database for Oryza sativa (japonica and indica sequences included) and molecular tools are included
- MSU: Plant Specific Database - excellent research resource for plant molecular biology, especially for Arabidopsis genomics
- AREX: The Arabidopsis Gene Expression Database - microarray data and traditional in situ hybridization results of molecular biology
- AmiGO! Your friend in the Gene Ontology - a metadatabase on genes and functional genomics
- Plant DNA C-values Database - comparison of DNA quantity of angiosperms, gymnosperms, pteridophytes and bryophytes
- Maize Mapping Project - high throughput data on Zea mays genetics, chromosomes, genetic information, ESTs, BACs, InDels, and more
- Gene Ontology Consortium - a consistent vocabulary for all organisms, genes, proteins and protein roles
- AGBIOS :: GM Database - encyclopedic site on transgenic and genetically engineered crop plants
- NSF Net Center for Plant Genomics - meta-database of all that is currently known for plants
- PlantsT: Functional Genomics of Plant Transporters - intramembrane proteins, transporters and related genechips
- ChromDB: The Plant Chromatin Database - chromatin organization, BLAST sequences and research references
- Entrez Genome - taxomonic portal to available genomes and the entire DNA sequence of model organisms including Arabidopsis
- ISIS - Intron Sequence and Information database - post-transcriptional mRNA processing data
- NCBI Entrez Taxonomy Homepage - phylogenetic relationships of all organisms as a means of cataloging genome & proteome data
- Microbial Genomics - introduction to genomics of microbes (including viruses, bacteria, fungi, protozoa and microalgae)
- Angiosperm DNA C-Values Database - quantitative DNA amounts in picograms and megabasepairs (mbp)
- Pteridophyte DNA C-Values Database - quantitative DNA amounts in picograms and megabasepairs (mbp) in ferns & fern allies (horsetails, club moss, spike moss, etc)
- The Institute for Genomic Research (TIGR) Databases - Arabidopsis, rice, maize, tomato, potato and soy genomic information
- UK CropNet - DNA sequence data, ESTs, genomic information on UK crop and model plants
- ARS Genome Database Resource - DNA sequence data, ESTs, genomic information on crop and model plants
- MaizeDB: the Maize Genome Database - corn informatics/genomics database, featuring ESTs, primers, genes
- WWW-VL Biotechnology - link sites, including bioengineering companies and projects
- RNABase: The RNA Structure Database - tRNAs, rRNAs, mRNAs and an RNA primer
- Arabidopsis.Com - Lehle Seeds - everything Arabidopsis: research community, patents, latest bulletins, seeds
- Plant Genome Databases - A Tutorial - introduction to the plant genome projects
- Protein Data Bank - 3-D structure of macromolecules
- Protein Kinase Resource - enzymes critical downstream to signal transduction pathways
- Plant Genome Database Collaboration - links to Arabidopsis, wheat, corn, soybeans and forest trees
- Angiosperms (principally):
- M. Blinnikov's Phytolith Gallery - numerous images in light and scanning electron microscopy
- Angiosperm Phylogeny Website - reference site to flowering plant orders, families, phylogenetic trees
- UCMP Paleobotany: Cleared Leaf Collections - systematic collection including images and collection data
- Bibliography of References Related to Seed Dormancy and/or Germination in Higher Plants - authoritative collection of references from 1890 to the present
- Palm Tree Photo Gallery - 1544 digital images of mostly cultivated palms
- WattleWeb - Wattles of New South Wales - Acacias of Australia with an online dichotomous key
- Native Orchids of Canada - illustrated database on Canadian orchids
- Grass Images from Texas A & M Bioinformatics Working Group - classical drawings of 389 Poaceae, including spikelet details
- NatureServe - encyclopedic data on species status, maps, references and other reports
- Flora Danica Online - collection of over 3000 ancient plant images
- Virtual Palm Encyclopedia - dichotomous keys, biology, evolution and links
- Rooting Database - Rooting methods for 501 frequently grown plants.
- Floraguide - links, forum, searcher site, photographs
- Multilingual Multiscript Plant Name Database - guide to common names and species synonyms
- The Charles B. Graves Herbarium at Connecticut College - Database of the Charles B. Graves Herbarium at Connecticut College
- Ecology and Evolutionary Biology Greenhouses - Living plant collections at the University of Connecticut.
- A Synonymized Checklist of the Vascular Flora of the United States, Puerto Rico, and the Virgin Islands - North American species checklist
- Seed Germination Database
- Wealth of the Rainforest: Pharmacy to the World - database, links, images and articles on the Amazonian rainforest
- INRA Scientific Database Servers - links, databases, DNA, mychorrhizae, insects
- WWW Ethnobotanical Resource Directory - education opportunities, links, research, database, conferences
- International Organization for Plant Information (IOPI) - databases, host to GlobalPlant Checklist Project and Database of Plant Databases
- Agricultural Network Information Center - online references for plant information
- World Wide Flowering Plant Family Identification Key - a checklist of 174 morphological characteristics and 6 geographical regions
- Cornell University's Poisonous Plant Page - Plants, active phytochemicals, animal affects and links
- Plant Genome Database Collaboration - links to Arabidopsis, wheat, corn, soybeans and forest trees
- Missouri Botanical Garden - Research, education, images, virtual tours, floras, databases
- Flowerbase Image Database - About 7,000 color photos (multilingual Dutch site)
- TreeBASE - Database of Phylogenetic Knowledge - Access published phylogenetic trees from the literature
- Royal Botanic Garden Edinburgh - Gardens and European searchable database
- University and Jepson Herbaria of UC-Berkeley - Model herbarium and database site
- Common Names for Plant Diseases - Database of plant crop hosts and their diseases
- Flora of North America - Site of ambitious project to catalog all plants of America
- Index Nominum Genericorum - Valid genera and synonyms
- The Plant Tracker - versatile plant database
- FLORIN Databases - For herbaria
- W3TROPICOS Database
- Phytochemical and Ethnobotanical Databases - ARS resource on ecology, ethnobotany, Native American food and medicine plants, plant chemistry
- Arabidopsis/Saccharomyces Genome Databases - Databases
- Carnivorous Plants Database - Everything you wanted to know
- Henriette's Herbal Homepage - Access to a plant name database
- Gymnosperms:
- BOTNET: North Carolina Botanical Information Network - model herbarium site for online data storage, currently gymnosperms
- Palynology (study of pollen):
- USDA, ARS, APMRU Pollen Lab - ~7500 specimen collection with vouchers, light micrographs, scanning electronic microscopy (SEM) images
- American Academy of Allergy, Asthma and Immunology’s (AAAAI) Aeroallergen Network - information about allergies to pollen and spores
- PalDat - Palynological data of the University of Vienna Institute of Botany.
- Palynological laboratory - Pollen Service - aerobiology, pollen and spore related links
- Paleopalynology, Fossil Pollen, Spore, Algae Home Page - intro site to the study of palynology w/dinoflagellate page
- North American Pollen Database (NAPD)
- NOAA Paleoclimatology Program
- European Pollen Database
- Global Pollen Database
- Latin American Pollen Database
- Lichens / Fungi:
- DEEMY: Characterization and DEtermination of EctoMYcorrhizae - research database for identifying and characterizing ectomycorrhizae fungus-plant interactions w/images
- ITALIC - Information System on Italian Lichens - database featuring over 2100 images of 1400 species of Italian lichens
- Fun with Lichens - Database, images and species synoptic key
- Protists / Algae:
- UTEX Culture Collection of Algae - collection of over 3200 mostly freshwater alga with about 150 extremophilic algae
- AlgaeBase - scientific names and distribution of algae, cyanobacteria, seaweeds, seagrasses
- World Data Centre for Microorganisms (WDCM) - links for phylogenetic analysis, genome projects, biodiversity, culture collections
- Home of the Fossil Coralline Algae (Corallinaceae: Rhodophyta) - anatomy, distribution of red coralline algae
- Cyanosite - bluegreen algae reference and experimental protocol site
- University and Jepson Herbaria of UC-Berkeley - Algal database at site
- The Diatom Collection of the California Academy of Sciences
- Protist Image Database
- Protist Database List
This service is organized by Scott Russell through the Department of Botany and Microbiology of the University of Oklahoma. If you have any comments for the improvement this page or nominations for links, please contact me by email (srussell@ou.edu).
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